ConKit: a python interface to contact predictions



Simkovic, Felix ORCID: 0000-0003-3430-6828, Thomas, Jens MH ORCID: 0000-0003-0277-8505 and Rigden, Daniel J ORCID: 0000-0002-7565-8937
(2017) ConKit: a python interface to contact predictions. BIOINFORMATICS, 33 (14). pp. 2209-2211.

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Abstract

<h4>Summary</h4>Recent advances in protein residue contact prediction algorithms have led to the emergence of many new methods and a variety of file formats. We present ConKit , an open source, modular and extensible Python interface which allows facile conversion between formats and provides an interface to analyses of sequence alignments and sets of contact predictions.<h4>Availability and implementation</h4>ConKit is available via the Python Package Index. The documentation can be found at http://www.conkit.org . ConKit is licensed under the BSD 3-Clause.<h4>Contact</h4>hlfsimko@liverpool.ac.uk or drigden@liverpool.ac.uk.<h4>Supplementary information</h4>Supplementary data are available at Bioinformatics online.

Item Type: Article
Uncontrolled Keywords: Proteins, Sequence Alignment, Amino Acid Sequence, Algorithms, Software, User-Computer Interface
Depositing User: Symplectic Admin
Date Deposited: 13 Mar 2017 11:17
Last Modified: 19 Jan 2023 07:14
DOI: 10.1093/bioinformatics/btx148
Related URLs:
URI: https://livrepository.liverpool.ac.uk/id/eprint/3006358