The Structure and Function of an Arabinan-specific α-1,2-Arabinofuranosidase Identified from Screening the Activities of Bacterial GH43 Glycoside Hydrolases



Cartmell, Alan ORCID: 0000-0002-5512-249X, McKee, Lauren S, Pena, Maria J, Larsbrink, Johan, Brumer, Harry, Kaneko, Satoshi, Ichinose, Hitomi, Lewis, Richard J, Vikso-Nielsen, Anders, Gilbert, Harry J
et al (show 1 more authors) (2011) The Structure and Function of an Arabinan-specific α-1,2-Arabinofuranosidase Identified from Screening the Activities of Bacterial GH43 Glycoside Hydrolases. JOURNAL OF BIOLOGICAL CHEMISTRY, 286 (17). pp. 15483-15495.

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Abstract

Reflecting the diverse chemistry of plant cell walls, microorganisms that degrade these composite structures synthesize an array of glycoside hydrolases. These enzymes are organized into sequence-, mechanism-, and structure-based families. Genomic data have shown that several organisms that degrade the plant cell wall contain a large number of genes encoding family 43 (GH43) glycoside hydrolases. Here we report the biochemical properties of the GH43 enzymes of a saprophytic soil bacterium, Cellvibrio japonicus, and a human colonic symbiont, Bacteroides thetaiotaomicron. The data show that C. japonicus uses predominantly exo-acting enzymes to degrade arabinan into arabinose, whereas B. thetaiotaomicron deploys a combination of endo- and side chain-cleaving glycoside hydrolases. Both organisms, however, utilize an arabinan-specific α-1,2-arabinofuranosidase in the degradative process, an activity that has not previously been reported. The enzyme can cleave α-1,2-arabinofuranose decorations in single or double substitutions, the latter being recalcitrant to the action of other arabinofuranosidases. The crystal structure of the C. japonicus arabinan-specific α-1,2-arabinofuranosidase, CjAbf43A, displays a five-bladed β-propeller fold. The specificity of the enzyme for arabinan is conferred by a surface cleft that is complementary to the helical backbone of the polysaccharide. The specificity of CjAbf43A for α-1,2-l-arabinofuranose side chains is conferred by a polar residue that orientates the arabinan backbone such that O2 arabinose decorations are directed into the active site pocket. A shelflike structure adjacent to the active site pocket accommodates O3 arabinose side chains, explaining how the enzyme can target O2 linkages that are components of single or double substitutions.

Item Type: Article
Uncontrolled Keywords: Colon, Humans, Bacteroides, Cellvibrio, Glycoside Hydrolases, Arabinose, Crystallography, X-Ray, Catalytic Domain
Depositing User: Symplectic Admin
Date Deposited: 10 Sep 2019 14:42
Last Modified: 05 Oct 2023 18:57
DOI: 10.1074/jbc.M110.215962
Open Access URL: http://www.jbc.org/content/286/17/15483.full.pdf
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URI: https://livrepository.liverpool.ac.uk/id/eprint/3054149