Ni(Glu)
Crystal submitted by: |
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Crystal submitted on: |
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Data collected on: |
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Structure solved by: |
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Table 1 Crystal data and structure refinement for Ni(Glu)
Identification code
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Ni(Glu)
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Empirical formula
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C5H11NNiO6
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Formula weight
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239.86
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Temperature/K
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100.0
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Crystal system
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Orthorhombic
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Space group
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P212121
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a/Å, b/Å, c/Å
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7.1385(14), 10.343(2), 11.135(2)
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α/°, β/°, γ/°
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90.00, 90.00, 90.00
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Volume/Å3
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822.2(3)
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Z
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4
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ρcalcmg/mm3
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1.938
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m/mm‑1
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2.359
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F(000)
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496
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Crystal size/mm3
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0.1 × 0.1 × 0.1
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Theta range for data collection
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2.69 to 27.92°
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Index ranges
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-8 ≤ h ≤ 9, -13 ≤ k ≤ 13, -12 ≤ l ≤ 14
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Reflections collected
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4322
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Independent reflections
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1858[R(int) = 0.0364]
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Data/restraints/parameters
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1858/0/162
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Goodness-of-fit on F2
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0.785
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Final R indexes [I>2σ (I)]
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R1 = 0.0257, wR2 =
0.0363
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Final R indexes [all data]
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R1 = 0.0305, wR2 = 0.0368
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Largest diff. peak/hole / e Å-3
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0.483/-0.381
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Table 2 Atomic Coordinates (Å×104) and Equivalent Isotropic Displacement Parameters (Å2×103) for Ni(Glu). Ueq is defined as 1/3 of of the trace of the orthogonalised UIJ tensor.
Atom | x | y | z | U(eq) |
Ni1 | 8919.6(5) | 4344.1(3) | 390.9(3) | 9.11(8) |
O1 | 10225(2) | 2599.9(16) | 229.3(17) | 9(4) |
O5W | 7983(3) | 6179.3(18) | 307(2) | 17(5) |
O3 | 14964(2) | 5351.1(17) | -2921.7(15) | 10.9(4) |
C5 | 13490(4) | 4773(2) | -3286(2) | 11.8(7) |
O2 | 6452(2) | 3740.1(15) | 1138.2(15) | 12.1(4) |
O4 | 13188(2) | 4659.7(15) | -4410(16) | 13.1(5) |
N1 | 8205(4) | 3929(2) | -1363(2) | 11.1(6) |
C1 | 10408(4) | 2187(2) | -832(2) | 9(6) |
C2 | 9341(4) | 2849(2) | -1846(2) | 9.9(7) |
C4 | 12178(4) | 4239(3) | -2345(2) | 12.7(6) |
C3 | 10701(4) | 3323(3) | -2821(3) | 11.4(7) |
O6W | 4618(3) | 6493(2) | -763(2) | 14(5) |
Table 3 Anisotropic Displacement Parameters (Å2×103) for Ni(Glu). The Anisotropic displacement factor exponent takes the form: -2π2[h2a*2U11+...+2hka×b×U12]
Atom | U11 | U22 | U33 | U23 | U13 | U12 |
Ni1 | 8.31(16) | 10.18(14) | 8.83(15) | -0.08(17) | 0.05(17) | -0.32(16) |
O1 | 9.6(10) | 10.8(9) | 6.7(10) | 0.1(9) | -1(9) | 3.2(7) |
O5W | 10.2(11) | 12.1(10) | 28.8(13) | -0.5(11) | -6.6(12) | -0.1(8) |
O3 | 8.9(11) | 15.8(11) | 7.9(9) | -0.3(8) | -0.9(8) | -3.7(8) |
C5 | 11.9(18) | 9.5(13) | 14.1(16) | 1.2(11) | 1.5(12) | 4.1(11) |
O2 | 11(11) | 11.9(9) | 13.3(10) | -1.8(8) | 0.7(9) | -1.5(8) |
O4 | 11.5(10) | 16.1(10) | 11.8(11) | 0(8) | 0.6(8) | -0.7(7) |
N1 | 11.3(14) | 11.5(13) | 10.6(14) | 3.9(11) | -0.3(11) | 3.7(10) |
C1 | 7.1(14) | 5.3(13) | 14.5(15) | 0(11) | 0.5(12) | -2.8(11) |
C2 | 7.7(17) | 8.3(14) | 13.8(16) | -2.9(12) | -0.4(12) | -2.5(11) |
C4 | 11.1(15) | 16.1(16) | 11.1(14) | 0.4(14) | -1.3(12) | -3.3(14) |
C3 | 10(18) | 16.3(15) | 7.9(14) | 2.4(13) | -0.4(12) | -0.6(12) |
O6W | 14.5(12) | 14.5(11) | 13.1(13) | 0.6(10) | 1.2(10) | -1.9(9) |
Table 4 Bond Lengths for Ni(Glu).
Atom | Atom | Length/Å | Atom | Atom | Length/Å |
Ni1 | O1 | 2.0386(17) | C5 | O42 | 1.276(3) |
Ni1 | O5W | 2.0147(19) | C5 | C4 | 1.510(4) |
Ni1 | O31 | 2.0651(17) | O2 | C1 | 1.261(3) |
Ni1 | O2 | 2.0460(18) | O4 | Ni1 | 2.3181(16) |
Ni1 | O41 | 2.3181(16) | N1 | C23 | 1.482(3) |
Ni1 | N1 | 2.064(2) | C1 | O2 | 1.261(3) |
O1 | C1 | 1.264(3) | C1 | C2 | 1.524(4) |
O3 | Ni1 | 2.0650(17) | C2 | C3 | 1.537(3) |
O3 | C5 | 1.276(3) | C4 | C34 | 1.514(4) |
Table 5 Bond Angles for Ni(Glu).
Atom | Atom | Atom | Angle/˚ | Atom | Atom | Atom | Angle/˚ |
O1 | Ni1 | O3 | 92.23(7) | O2 | Ni1 | O4 | 149.74(7) |
O1 | Ni1 | O2 | 99.17(7) | O2 | Ni1 | N1 | 96.23(9) |
O1 | Ni1 | O4 | 89.69(6) | O2 | C1 | O1 | 124.8(2) |
O1 | Ni1 | N1 | 81.11(8) | O2 | C1 | C2 | 115.9(2) |
O1 | C1 | C21 | 119.3(2) | O4 | C5 | O3 | 119.6(2) |
O5W | Ni1 | O1 | 168.94(9) | O4 | C5 | C41 | 122.8(2) |
O5W | Ni1 | O31 | 91.52(8) | N1 | Ni1 | O31 | 171.18(9) |
O5W | Ni1 | O2 | 91.19(8) | N1 | Ni1 | O4 | 113.77(8) |
O5W | Ni1 | O4 | 83.18(8) | N13 | C2 | C1 | 110.1(2) |
O5W | Ni1 | N1 | 94.01(10) | N13 | C2 | C3 | 111.2(2) |
O3 | Ni1 | O41 | 60.09(6) | C1 | O1 | Ni1 | 115.38(16) |
O3 | C5 | C4 | 117.5(2) | C1 | O2 | Ni11 | 129.13(17) |
C5 | O3 | Ni11 | 95.77(16) | C1 | C2 | C31 | 110.5(2) |
C5 | O4 | Ni1 | 84.40(15) | C2 | N1 | Ni1 | 111.42(17) |
C51 | C4 | C31 | 114.7(2) | C4 | C3 | C2 | 113.1(2) |
O2 | Ni1 | O32 | 90.51(7) | | | | |
Table 6 Hydrogen Bonds for Ni(Glu).
D | H | A | d(D-H)/Å | d(H-A)/Å | d(D-A)/Å | D-H-A/° |
O5W | H5WA | O6W | 0.79(3) | 1.92(3) | 2.701(3) | 173(3) |
O5W | H5WB | O6W1 | 0.82(3) | 1.92(3) | 2.723(3) | 165(3) |
O6W | H6WA | O42 | 0.70(3) | 2.09(3) | 2.776(3) | 167(3) |
O6W | H6WB | O33 | 0.81(3) | 1.89(3) | 2.689(3) | 170(3) |
Table 7 Torsion Angles for Ni(Glu).
A | B | C | D | Angle/˚ |
Ni1 | O1 | C1 | O21 | 166.73(19) |
Ni1 | O1 | C1 | C2 | -12.0(3) |
Ni12 | O3 | C5 | O4 | -3.6(2) |
Ni12 | O3 | C5 | C4 | 175.9(2) |
Ni1 | N1 | C2 | C1 | 11.7(3) |
Ni1 | N1 | C2 | C3 | -111.2(2) |
O1 | Ni1 | O2 | C13 | -46.5(2) |
O1 | Ni1 | N1 | C2 | -13.81(17) |
O1 | C1 | C2 | N1 | -0.1(3) |
O1 | C1 | C2 | C3 | 123.2(3) |
O5W | Ni1 | O1 | C1 | -49.9(5) |
O5W | Ni1 | O2 | C13 | 129.6(2) |
O5W | Ni1 | N1 | C2 | 156.19(18) |
O34 | Ni1 | O1 | C1 | -159.62(19) |
O34 | Ni1 | O2 | C13 | -138.8(2) |
O34 | Ni1 | N1 | C2 | 27.5(7) |
O3 | C5 | O4 | Ni12 | 3.2(2) |
O3 | C5 | C4 | C3 | -167.3(2) |
C5 | C4 | C3 | C2 | -177.4(2) |
O2 | Ni1 | O1 | C1 | 109.50(19) |
O2 | Ni1 | N1 | C2 | -112.16(18) |
O21 | C1 | C2 | N1 | -178.9(2) |
O21 | C1 | C2 | C3 | -55.7(3) |
O44 | Ni1 | O1 | C1 | -99.57(19) |
O44 | Ni1 | O2 | C13 | -151.91(18) |
O44 | Ni1 | N1 | C2 | 71.89(19) |
O4 | C5 | C4 | C3 | 12.2(4) |
N1 | Ni1 | O1 | C1 | 14.56(19) |
N1 | Ni1 | O2 | C13 | 35.5(2) |
N1 | C2 | C3 | C4 | 65.2(3) |
C1 | C2 | C3 | C4 | -57.4(3) |
C4 | C5 | O4 | Ni12 | -176.3(2) |
Table 8 Hydrogen Atom Coordinates (Å×104) and Isotropic Displacement Parameters (Å2×103) for Ni(Glu).
Atom | x | y | z | U(eq) |
H3B | 11310(3) | 2490(2) | -3217(18) | 3(6) |
H3A | 9950(4) | 3710(3) | -3410(2) | 17(8) |
H5WA | 7010(4) | 6340(2) | 0(2) | 18(10) |
H6WA | 4040(4) | 6140(2) | -380(2) | 11(9) |
H1B | 8090(3) | 4540(2) | -1810(2) | 3(8) |
H4A | 11660(3) | 5040(2) | -1890(2) | 20(8) |
H1A | 6890(4) | 3680(2) | -1200(2) | 14(8) |
H6WB | 4690(5) | 6070(3) | -1370(3) | 50(14) |
H5WB | 8640(5) | 6810(3) | 470(3) | 61(12) |
H4B | 13000(4) | 3770(2) | -1660(2) | 25(8) |
H2 | 8580(3) | 2233(19) | -2230(2) | 0(6) |
[RSC Journal Format]
Experimental
Single crystals of C5H11NNiO6
[Ni(Glu)]
were recrystallised from
[solvents]
mounted in inert oil and transferred to the cold gas stream of the diffractometer.
Crystal structure determination of
[Ni(Glu)]
Crystal Data.
C5H11NNiO6,
M =239.86,
Orthorhombic,
a = 7.1385(14) Å, b = 10.343(2) Å, c = 11.135(2) Å,
U = 822.2(3) Å3,
T = 100.0,
space group P212121 (no. 19),
Z = 4,
μ(Mo-Kα) = 2.359,
4322 reflections measured,
1858 unique (Rint = 0.0364) which were used in all calculations.
The final wR(F2) was 0.0368 (all data).
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