Lu, Ye, Corradi, Chiara, Gentiluomo, Manuel, Lopez de Maturana, Evangelina, Theodoropoulos, George E, Roth, Susanne, Maiello, Evaristo, Morelli, Luca, Archibugi, Livia, Izbicki, Jakob R et al (show 67 more authors)
(2021)
Association of Genetic Variants Affecting microRNAs and Pancreatic Cancer Risk.
FRONTIERS IN GENETICS, 12.
693933-.
Text
Association of Genetic Variants Affecting microRNAs and Pancreatic Cancer Risk.pdf - Open Access published version Download (1MB) | Preview |
Abstract
Genetic factors play an important role in the susceptibility to pancreatic cancer (PC). However, established loci explain a small proportion of genetic heritability for PC; therefore, more progress is needed to find the missing ones. We aimed at identifying single nucleotide polymorphisms (SNPs) affecting PC risk through effects on micro-RNA (miRNA) function. We searched <i>in silico</i> the genome for SNPs in miRNA seed sequences or 3 prime untranslated regions (3'UTRs) of miRNA target genes. Genome-wide association data of PC cases and controls from the Pancreatic Cancer Cohort (PanScan) Consortium and the Pancreatic Cancer Case-Control (PanC4) Consortium were re-analyzed for discovery, and genotyping data from two additional consortia (PanGenEU and PANDoRA) were used for replication, for a total of 14,062 cases and 11,261 controls. None of the SNPs reached genome-wide significance in the meta-analysis, but for three of them the associations were in the same direction in all the study populations and showed lower value of <i>p</i> in the meta-analyses than in the discovery phase. Specifically, rs7985480 was consistently associated with PC risk (OR = 1.12, 95% CI 1.07-1.17, <i>p</i> = 3.03 × 10<sup>-6</sup> in the meta-analysis). This SNP is in linkage disequilibrium (LD) with rs2274048, which modulates binding of various miRNAs to the 3'UTR of <i>UCHL3</i>, a gene involved in PC progression. In conclusion, our results expand the knowledge of the genetic PC risk through miRNA-related SNPs and show the usefulness of functional prioritization to identify genetic polymorphisms associated with PC risk.
Item Type: | Article |
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Uncontrolled Keywords: | pancreatic cancer, miRNA, genetic polymorphisms, susceptibility, pancreatic ductal adenocarcinoma |
Divisions: | Faculty of Health and Life Sciences Faculty of Health and Life Sciences > Institute of Systems, Molecular and Integrative Biology |
Depositing User: | Symplectic Admin |
Date Deposited: | 15 Mar 2024 17:00 |
Last Modified: | 15 Mar 2024 20:16 |
DOI: | 10.3389/fgene.2021.693933 |
Related URLs: | |
URI: | https://livrepository.liverpool.ac.uk/id/eprint/3179487 |