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Johnston, Peter I ORCID: 0000-0001-9400-6339, Bogue, Patrick, Chirambo, Angeziwa Chunga, Mbewe, Maurice, Prakash, Reenesh, Kandoole-Kabwere, Vanessa, Lester, Rebecca, Darton, Thomas, Baker, Stephen, Gordon, Melita A ORCID: 0000-0002-0629-0884 et al (show 1 more authors) and Meiring, James E (2023) Bacterial shedding and serologic responses following an outbreak of Salmonella Typhi in an endemic cohort. BMC Infectious Diseases, 23 (1). 416-.

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Koolman, Leonard, Prakash, Reenesh, Diness, Yohane, Msefula, Chisomo, Nyirenda, Tonney, Olgemoeller, Franziska, Wigley, Paul ORCID: 0000-0001-6563-0773, Perez-Sepulveda, Blanca ORCID: 0000-0002-2891-4010, Hinton, Jay ORCID: 0000-0003-2671-6026, Owen, Siân et al (show 3 more authors) , Feasey, Nicholas, Ashton, Philip and Gordon, Melita ORCID: 0000-0002-0629-0884 (2022) Case-control investigation of invasive Salmonella disease in Malawi reveals no evidence of environmental or animal transmission of invasive strains, and supports human to human transmission. PLoS Neglected Tropical Diseases.

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Koolman, Leonard, Prakash, Reenesh, Diness, Yohane, Msefula, Chisomo, Nyirenda, Tonney S, Olgemoeller, Franziska, Wigley, Paul, Perez-Sepulveda, Blanca, Hinton, Jay CD ORCID: 0000-0003-2671-6026, Owen, Siân V et al (show 3 more authors) , Feasey, Nicholas A, Ashton, Philip M and Gordon, Melita A ORCID: 0000-0002-0629-0884 (2022) Case-control investigation of invasive Salmonella disease in Malawi reveals no evidence of environmental or animal transmission of invasive strains, and supports human to human transmission. PLoS neglected tropical diseases, 16 (12). e0010982-e0010982.

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Baker, Dave J, Aydin, Alp, Le-Viet, Thanh, Kay, Gemma L ORCID: 0000-0002-1176-8459, Rudder, Steven, de Oliveira Martins, Leonardo, Tedim, Ana P ORCID: 0000-0003-1016-7173, Kolyva, Anastasia, Diaz, Maria ORCID: 0000-0003-3423-9872, Alikhan, Nabil-Fareed et al (show 19 more authors) , Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Trotter, Alexander J, Thomson, Nicholas M, Gilroy, Rachel, Griffith, Luke, Adriaenssens, Evelien M ORCID: 0000-0003-4826-5406, Stanley, Rachael, Charles, Ian G, Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Meader, Emma, Mather, Alison E, Webber, Mark A ORCID: 0000-0001-9169-7592, Dervisevic, Samir, Page, Andrew J ORCID: 0000-0001-6919-6062 and O'Grady, Justin ORCID: 0000-0001-5412-7152 (2021) CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes. Genome medicine, 13 (1). 21-.

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Page, Andrew J ORCID: 0000-0001-6919-6062, Mather, Alison E, Le-Viet, Thanh, Meader, Emma J, Alikhan, Nabil-Fareed, Kay, Gemma L, de Oliveira Martins, Leonardo ORCID: 0000-0001-5247-1320, Aydin, Alp, Baker, David J, Trotter, Alexander J et al (show 33 more authors) , Rudder, Steven, Tedim, Ana P ORCID: 0000-0003-1016-7173, Kolyva, Anastasia, Stanley, Rachael, Yasir, Muhammad, Diaz, Maria ORCID: 0000-0003-3423-9872, Potter, Will, Stuart, Claire, Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Thomson, Nicholas M, Adriaenssens, Evelien M ORCID: 0000-0003-4826-5406, Swingler, Tracey, Gilroy, Rachel AJ, Griffith, Luke, Sethi, Dheeraj K, Aggarwal, Dinesh ORCID: 0000-0002-5938-8172, Brown, Colin S ORCID: 0000-0003-4776-3403, Davidson, Rose K, Kingsley, Robert A, Bedford, Luke, Coupland, Lindsay J, Charles, Ian G, Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Webber, Mark A, Smith, SJ Louise ORCID: 0000-0003-4925-467X, Chand, Meera, Dervisevic, Samir, O'Grady, Justin and The Covid-Genomics Uk Cog-Uk Consortium, (2021) Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management. Microbial genomics, 7 (6).

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Pulford, Caisey, Perez-Sepulveda, Blanca M, Canals, Rocio, Bevington, Jessica A, Bengtsson, Rebecca J, Wenner, Nicolas, Rodwell, Ella V, Kumwenda, Benjamin, Zhu, Xioajun, Bennett, Rebecca J ORCID: 0000-0001-5290-5109 et al (show 21 more authors) , Stenhouse, George E, De Silva, Malaka ORCID: 0000-0002-0579-0131, Webster, Hermione J ORCID: 0000-0001-8655-911X, Bengoechea, Jose A, Dumigan, Amy, Tran-Dien, ALicia, Prakash, Reenesh, Banda, Happy C, Alufandika, Lovemore, Mautanga, Mike P, Bowers-Barnard, Arthuer, Beliavskaia, Alexendra Y ORCID: 0000-0002-1194-5689, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Rowe, Will PM, Darby, Alister C ORCID: 0000-0002-3786-6209, Nall, Neil, Weill, Francois-Xavier, Gordon, Melita A ORCID: 0000-0002-0629-0884, Feasey, Nicholas A, Baker, Kate S ORCID: 0000-0001-5850-1949 and Hinton, Jay ORCID: 0000-0003-2671-6026 (2020) Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa. Nature Microbiology, 6 (3). 327-+.