Simkovic, Felix ORCID: 0000-0003-3430-6828, Thomas, Jens MH ORCID: 0000-0003-0277-8505 and Rigden, Daniel J ORCID: 0000-0002-7565-8937
(2017)
ConKit: a python interface to contact predictions.
BIOINFORMATICS, 33 (14).
pp. 2209-2211.
Text
Simkovic_ConKit_rerevised.doc - Author Accepted Manuscript Download (284kB) |
Abstract
<h4>Summary</h4>Recent advances in protein residue contact prediction algorithms have led to the emergence of many new methods and a variety of file formats. We present ConKit , an open source, modular and extensible Python interface which allows facile conversion between formats and provides an interface to analyses of sequence alignments and sets of contact predictions.<h4>Availability and implementation</h4>ConKit is available via the Python Package Index. The documentation can be found at http://www.conkit.org . ConKit is licensed under the BSD 3-Clause.<h4>Contact</h4>hlfsimko@liverpool.ac.uk or drigden@liverpool.ac.uk.<h4>Supplementary information</h4>Supplementary data are available at Bioinformatics online.
Item Type: | Article |
---|---|
Uncontrolled Keywords: | Proteins, Sequence Alignment, Amino Acid Sequence, Algorithms, Software, User-Computer Interface |
Depositing User: | Symplectic Admin |
Date Deposited: | 13 Mar 2017 11:17 |
Last Modified: | 19 Jan 2023 07:14 |
DOI: | 10.1093/bioinformatics/btx148 |
Related URLs: | |
URI: | https://livrepository.liverpool.ac.uk/id/eprint/3006358 |