Adaptation of host transmission cycle during Clostridium difficile speciation

Kumar, Nitin, Browne, Hilary P, Viciani, Elisa, Forster, Samuel C, Clare, Simon, Harcourt, Katherine, Stares, Mark D, Dougan, Gordon, Fairley, Derek J, Roberts, Paul
et al (show 12 more authors) (2019) Adaptation of host transmission cycle during Clostridium difficile speciation. NATURE GENETICS, 51 (9). pp. 1315-1320.

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Bacterial speciation is a fundamental evolutionary process characterized by diverging genotypic and phenotypic properties. However, the selective forces that affect genetic adaptations and how they relate to the biological changes that underpin the formation of a new bacterial species remain poorly understood. Here, we show that the spore-forming, healthcare-associated enteropathogen Clostridium difficile is actively undergoing speciation. Through large-scale genomic analysis of 906 strains, we demonstrate that the ongoing speciation process is linked to positive selection on core genes in the newly forming species that are involved in sporulation and the metabolism of simple dietary sugars. Functional validation shows that the new C. difficile produces spores that are more resistant and have increased sporulation and host colonization capacity when glucose or fructose is available for metabolism. Thus, we report the formation of an emerging C. difficile species, selected for metabolizing simple dietary sugars and producing high levels of resistant spores, that is adapted for healthcare-mediated transmission.

Item Type: Article
Uncontrolled Keywords: Humans, Spores, Bacterial, Clostridium Infections, Anti-Bacterial Agents, Genomics, Acclimatization, Virulence, Genome, Bacterial, Genetic Speciation, Sugars, Clostridioides difficile
Depositing User: Symplectic Admin
Date Deposited: 27 Aug 2019 08:47
Last Modified: 19 Jan 2023 00:28
DOI: 10.1038/s41588-019-0478-8
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