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O'Toole, Áine
ORCID: 0000-0001-8083-474X, Hill, Verity, Pybus, Oliver G, Watts, Alexander, Bogoch, Issac I
ORCID: 0000-0003-1590-6748, Khan, Kamran, Messina, Jane P, COVID-19 Genomics UK (COG-UK) consortium, Network for Genomic Surveillance in South Africa (NGS-SA), Brazil-UK CADDE Genomic Network et al (show 90 more authors) , Tegally, Houriiyah, Lessells, Richard R
ORCID: 0000-0003-0926-710X, Giandhari, Jennifer, Pillay, Sureshnee
ORCID: 0000-0001-9288-7996, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo
ORCID: 0000-0002-7124-9343, Mine, Madisa, Tokajian, Sima
ORCID: 0000-0002-3653-8940, Hassan, Hamad, Salloum, Tamara
ORCID: 0000-0002-2689-4175, Merhi, Georgi
ORCID: 0000-0002-5558-4088, Koweyes, Jad
ORCID: 0000-0003-2010-6016, Geoghegan, Jemma L, de Ligt, Joep
ORCID: 0000-0002-0348-419X, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E, Pattabiraman, Chitra
ORCID: 0000-0002-9707-3358, Prasad, Pramada, Desai, Anita S, Vasanthapuram, Ravi, Schulz, Thomas F
ORCID: 0000-0001-8792-5345, Steinbrück, Lars
ORCID: 0000-0001-9142-7146, Stadler, Tanja
ORCID: 0000-0001-6431-535X, Swiss Viollier Sequencing Consortium, Parisi, Antonio, Bianco, Angelica
ORCID: 0000-0002-6156-4657, García de Viedma, Darío, Buenestado-Serrano, Sergio
ORCID: 0000-0003-1739-4459, Borges, Vítor
ORCID: 0000-0003-3767-2209, Isidro, Joana
ORCID: 0000-0002-8529-9878, Duarte, Sílvia
ORCID: 0000-0003-2943-5975, Gomes, João Paulo
ORCID: 0000-0002-2697-2399, Zuckerman, Neta S, Mandelboim, Michal, Mor, Orna, Seemann, Torsten, Arnott, Alicia, Draper, Jenny
ORCID: 0000-0002-6916-6442, Gall, Mailie
ORCID: 0000-0001-7018-2426, Rawlinson, William, Deveson, Ira
ORCID: 0000-0003-3861-0472, Schlebusch, Sanmarié, McMahon, Jamie, Leong, Lex, Lim, Chuan Kok
ORCID: 0000-0002-2828-2922, Chironna, Maria
ORCID: 0000-0002-1043-1256, Loconsole, Daniela
ORCID: 0000-0003-2057-9745, Bal, Antonin, Josset, Laurence, Holmes, Edward, St George, Kirsten, Lasek-Nesselquist, Erica, Sikkema, Reina S, Oude Munnink, Bas, Koopmans, Marion, Brytting, Mia, Sudha Rani, V
ORCID: 0000-0002-7161-9527, Pavani, S, Smura, Teemu, Heim, Albert, Kurkela, Satu, Umair, Massab, Salman, Muhammad, Bartolini, Barbara, Rueca, Martina, Drosten, Christian, Wolff, Thorsten
ORCID: 0000-0001-7688-236X, Silander, Olin, Eggink, Dirk, Reusken, Chantal, Vennema, Harry, Park, Aekyung, Carrington, Christine
ORCID: 0000-0001-6533-9302, Sahadeo, Nikita, Carr, Michael
ORCID: 0000-0003-0011-6209, Gonzalez, Gabo, SEARCH Alliance San Diego, National Virus Reference Laboratory, SeqCOVID-Spain, Danish Covid-19 Genome Consortium (DCGC), Communicable Diseases Genomic Network (CDGN), Dutch National SARS-CoV-2 surveillance program, Division of Emerging Infectious Diseases (KDCA), de Oliveira, Tulio, Faria, Nuno
ORCID: 0000-0001-8839-2798, Rambaut, Andrew and Kraemer, Moritz UG
(2021)
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch.
Wellcome open research, 6.
121-.
ISSN 2398-502X, 2398-502X
Access the full-text of this item by clicking on the
Open Access link.
Abstract
Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected.
Item Type: |
Article
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Uncontrolled Keywords: |
COVID-19 Genomics UK (COG-UK) consortium, Network for Genomic Surveillance in South Africa (NGS-SA), Brazil-UK CADDE Genomic Network, Swiss Viollier Sequencing Consortium, SEARCH Alliance San Diego, National Virus Reference Laboratory, SeqCOVID-Spain, Danish Covid-19 Genome Consortium (DCGC), Communicable Diseases Genomic Network (CDGN), Dutch National SARS-CoV-2 surveillance program, Division of Emerging Infectious Diseases (KDCA) |
Divisions: |
Faculty of Health and Life Sciences Faculty of Health and Life Sciences > Institute of Infection, Veterinary and Ecological Sciences |
Depositing User: |
Symplectic Admin
|
Date Deposited: |
16 May 2022 07:55 |
Last Modified: |
07 Dec 2024 23:20 |
DOI: |
10.12688/wellcomeopenres.16661.2 |
Open Access URL: |
https://doi.org/10.12688/wellcomeopenres.16661.2 |
Related URLs: |
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URI: |
https://livrepository.liverpool.ac.uk/id/eprint/3154853 |