Alotaibi, Faizah S, Alsadun, Marim MR, Alsaiari, Sarah A, Ramakrishnan, Krithika, Yates, Edwin A 
ORCID: 0000-0001-9365-5433 and Fernig, David G ORCID: 0000-0003-4875-4293
(2024)
Interactions of proteins with heparan sulfate.
Essays in biochemistry, 68 (4).
EBC20230093-EBC20230093.
ISSN 0071-1365, 1744-1358
Abstract
Heparan sulfate (HS) is a glycosaminoglycan, polysaccharides that are considered to have arisen in the last common unicellular ancestor of multicellular animals. In this light, the large interactome of HS and its myriad functions in relation to the regulation of cell communication are not surprising. The binding of proteins to HS determines their localisation and diffusion, essential for embryonic development and homeostasis. Following the biosynthesis of the initial heparosan polymer, the subsequent modifications comprise an established canonical pathway and a minor pathway. The more frequent former starts with N-deacetylation and N-sulfation of GlcNAc residues, the latter with C-5 epimerisation of a GlcA residue adjacent to a GlcNAc. The binding of proteins to HS is driven by ionic interactions. The multivalent effect arising from the many individual ionic bonds between a single protein and a polysaccharide chain results in a far stronger interaction than would be expected from an ion-exchange process. In many instances, upon binding, both parties undergo substantial conformational change, the resulting hydrogen and van der Waal bonds contributing significant free energy to the binding reaction. Nevertheless, ionic bonds dominate the protein-polysaccharide interaction kinetically. Together with the multivalent effect, this provides an explanation for the observed trapping of HS-binding proteins in extracellular matrix. Importantly, individual ionic bonds have been observed to be dynamic; breaking and reforming, while the protein remains bound to the polysaccharide. These considerations lead to a model for 1D diffusion of proteins in extracellular matrix on HS, involving mechanisms such as sliding, chain switching and rolling.
| Item Type: | Article |
|---|---|
| Uncontrolled Keywords: | Animals, Humans, Heparitin Sulfate, Proteins, Protein Binding |
| Divisions: | Faculty of Health and Life Sciences Faculty of Health and Life Sciences > Institute of Systems, Molecular and Integrative Biology |
| Depositing User: | Symplectic Admin |
| Date Deposited: | 07 Oct 2024 07:42 |
| Last Modified: | 08 Dec 2024 02:50 |
| DOI: | 10.1042/ebc20230093 |
| Open Access URL: | https://doi.org/10.1042/EBC20230093 |
| Related Websites: | |
| URI: | https://livrepository.liverpool.ac.uk/id/eprint/3184897 |
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