Nicholls, Samuel M, Poplawski, Radoslaw, Bull, Matthew J, Underwood, Anthony, Chapman, Michael, Abu-Dahab, Khalil, Taylor, Ben, Colquhoun, Rachel M, Rowe, Will PM, Jackson, Ben et al (show 13 more authors)
(2021)
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Genome Biology, 22 (1).
196-.
Abstract
<jats:title>Abstract</jats:title><jats:p>In response to the ongoing SARS-CoV-2 pandemic in the UK, the COVID-19 Genomics UK (COG-UK) consortium was formed to rapidly sequence SARS-CoV-2 genomes as part of a national-scale genomic surveillance strategy. The network consists of universities, academic institutes, regional sequencing centres and the four UK Public Health Agencies. We describe the development and deployment of CLIMB-COVID, an encompassing digital infrastructure to address the challenge of collecting and integrating both genomic sequencing data and sample-associated metadata produced across the COG-UK network.</jats:p>
Item Type: | Article |
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Uncontrolled Keywords: | COVID-19 Genomics UK (COG-UK) Consortium, Humans, Sequence Analysis, DNA, Genomics, Genome, Viral, User-Computer Interface, Epidemiological Monitoring, Cloud Computing, United Kingdom, Whole Genome Sequencing, COVID-19, SARS-CoV-2 |
Divisions: | Faculty of Health and Life Sciences Faculty of Health and Life Sciences > Institute of Infection, Veterinary and Ecological Sciences |
Depositing User: | Symplectic Admin |
Date Deposited: | 19 May 2022 07:53 |
Last Modified: | 18 Mar 2024 03:22 |
DOI: | 10.1186/s13059-021-02395-y |
Open Access URL: | https://doi.org/10.1186/s13059-021-02395-y |
Related URLs: | |
URI: | https://livrepository.liverpool.ac.uk/id/eprint/3155099 |