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Aljabr, Waleed ORCID: 0000-0002-9385-2776, Alruwaili, Muhannad, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alrezaihi, Abdulrahman, Harrison, Abbie Jasmine, Ryan, Yan ORCID: 0000-0002-4708-5350, Bentley, Eleanor, Jones, Benjamin, Alhatlani, Bader Y, AlShahrani, Dayel et al (show 19 more authors) , Mahmood, Zana ORCID: 0000-0001-6000-6648, Rickett, Natasha Y, Alosaimi, Bandar, Naeem, Asif, Alamri, Saad, Alsran, Hadel, Hamed, Maaweya E, Dong, Xiaofeng, Assiri, Abdullah M, Alrasheed, Abdullah R, Hamza, Muaawia, Carroll, Miles W, Gemmell, Matthew, Darby, Alistair ORCID: 0000-0002-3786-6209, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Stewart, James P ORCID: 0000-0002-8928-2037, Matthews, David A, Davidson, Andrew D and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2021) Amplicon and Metagenomic Analysis of Middle East Respiratory Syndrome (MERS) Coronavirus and the Microbiome in Patients with Severe MERS. mSphere, 6 (4). e0021921-e0021921.

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Moore, Shona ORCID: 0000-0001-8610-2806, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Dong, Xiaofeng, Pullan, Steven, Carter, Daniel, Bewley, Kevin ORCID: 0000-0002-9078-6734, Zhao, Qin, Sun, Yani, Hartley, Catherine et al (show 20 more authors) , Zhou, En-min, Solomon, Tom, Beadsworth, Michael, Cruise, James, Bogaert, Debby, Crook, Derrick ORCID: 0000-0002-0590-2850, Matthews, David ORCID: 0000-0003-4611-8795, Davidson, Andrew, Mahmood, Zana ORCID: 0000-0001-6000-6648, Aljabr, Waleed, Druce, Julian, Vipond, Richard, Ng, Lisa, Renia, Laurent, Openshaw, Peter, Baillie, Kenneth, Carroll, Miles, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance ORCID: 0000-0002-0778-1693 and Hiscox, Julian (2020) Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19. medrxiv. 2020.03.05.20032011-.

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Moore, Shona C ORCID: 0000-0001-8610-2806, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Randle, Nadine ORCID: 0000-0002-3775-9585, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Hartley, Catherine, Haldenby, Sam, Dong, Xiaofeng, Alrezaihi, Abdulrahman, Almsaud, Mai et al (show 36 more authors) , Bentley, Eleanor, Clark, Jordan, Garcia-Dorival, Isabel ORCID: 0000-0002-5654-5662, Gilmore, Paul, Han, Ximeng, Jones, Benjamin, Luu, Lisa ORCID: 0000-0002-7748-5961, Sharma, Parul ORCID: 0000-0002-9090-7540, Shawli, Ghada, Sun, Yani, Zhao, Qin, Pullan, Steven T, Carter, Daniel P, Bewley, Kevin, Dunning, Jake, Zhou, En-min, Solomon, Tom ORCID: 0000-0001-7266-6547, Beadsworth, Michael, Cruise, James, Crook, Derrick W, Matthews, David A, Davidson, Andrew D, Mahmood, Zana ORCID: 0000-0001-6000-6648, Aljabr, Waleed ORCID: 0000-0002-9385-2776, Druce, Julian, Vipond, Richard, Ng, Lisa ORCID: 0000-0003-4071-5222, Renia, Laurent, Openshaw, Peter JM, Baillie, J Kenneth, Carroll, Miles W, Stewart, James ORCID: 0000-0002-8928-2037, Darby, Alistair ORCID: 0000-0002-3786-6209, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance ORCID: 0000-0002-0778-1693 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2020) Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism. VIRUSES-BASEL, 12 (10). E1164-.

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Nasir, Jalees A, Kozak, Robert A, Aftanas, Patryk, Raphenya, Amogelang R, Smith, Kendrick M, Maguire, Finlay, Maan, Hassaan, Alruwaili, Muhannad, Banerjee, Arinjay, Mbareche, Hamza et al (show 7 more authors) , Alcock, Brian P, Knox, Natalie C, Mossman, Karen, Wang, Bo, Hiscox, Julian A ORCID: 0000-0002-6582-0275, McArthur, Andrew G and Mubareka, Samira (2020) A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture. Viruses, 12 (8). E895-.

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Goldswain, Hannah, Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Shawli, Ghada T, Prince, Tessa ORCID: 0000-0002-8796-2629, Williamson, Maia Kavanagh, Raghwani, Jayna, Randle, Nadine ORCID: 0000-0002-3775-9585, Jones, Benjamin et al (show 20 more authors) , Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Salguero, Francisco J, Tree, Julia A, Hall, Yper, Hartley, Catherine, Erdmann, Maximilian, Bazire, James, Jearanaiwitayakul, Tuksin, Semple, Malcolm G, Openshaw, Peter JM, Baillie, J Kenneth, ISARIC4C Investigators, , Emmett, Stevan R, Digard, Paul, Matthews, David A, Turtle, Lance, Darby, Alistair C ORCID: 0000-0002-3786-6209, Davidson, Andrew D, Carroll, Miles W and Hiscox, Julian A (2023) The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection. Genome biology, 24 (1). p. 47.

Alruwaili, Muhannad, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Prince, Tessa ORCID: 0000-0002-8796-2629, Erdmann, Maximillian, Matthews, David A, Luu, Lisa ORCID: 0000-0002-7748-5961, Davidson, Andrew, Aljabr, Waleed and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2023) SARS-CoV-2 NSP12 associates with TRiC and the P323L substitution acts as a host adaption. Journal of virology, 97 (11). e0042423-e0042423.