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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Yang, Marie, Cornick, Jennifer E, du Plessis, Mignon, Gladstone, Rebecca A, Kwambana-Adams, Brenda A, Lo, Stephanie W, Ebruke, Chinelo, Tonkin-Hill, Gerry, Peno, Chikondi et al (show 16 more authors) , Senghore, Madikay, Obaro, Stephen K, Ousmane, Sani, Pluschke, Gerd, Collard, Jean-Marc, Sigauque, Betuel, French, Neil ORCID: 0000-0003-4814-8293, Klugman, Keith P, Heyderman, Robert S, McGee, Lesley, Antonio, Martin, Breiman, Robert F, von Gottberg, Anne, Everett, Dean B, Kadioglu, Aras ORCID: 0000-0003-1137-6321 and Bentley, Stephen D (2020) Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. COMMUNICATIONS BIOLOGY, 3 (1). 559-.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Senghore, Madikay, Bojang, Ebrima, Lo, Stephanie W, Ebruke, Chinelo, Gladstone, Rebecca A, Tientcheu, Peggy-Estelle, Bancroft, Rowan E, Worwui, Archibald, Foster-Nyarko, Ebenezer et al (show 10 more authors) , Ceesay, Fatima, Okoi, Catherine, McGee, Lesley, Klugman, Keith P, Breiman, Robert F, Barer, Michael R, Adegbola, Richard A, Antonio, Martin, Bentley, Stephen D and Kwambana-Adams, Brenda A (2021) Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life. FRONTIERS IN PEDIATRICS, 8. 587730-.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Ebruke, Chinelo, Senghore, Madikay, Lo, Stephanie W, Tientcheu, Peggy-Estelle, Gladstone, Rebecca A, Tonkin-Hill, Gerry, Cornick, Jennifer E, Yang, Marie, Worwui, Archibald et al (show 11 more authors) , McGee, Lesley, Breiman, Robert F, Klugman, Keith P, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Everett, Dean B, Mackenzie, Grant, Croucher, Nicholas J, Roca, Anna, Kwambana-Adams, Brenda A, Antonio, Martin and Bentley, Stephen D (2022) Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci. GENOME BIOLOGY AND EVOLUTION, 14 (4). evac052-.

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Lo, Stephanie W, Mellor, Kate, Cohen, Robert, Alonso, Alba Redin, Belman, Sophie, Kumar, Narender, Hawkins, Paulina A, Gladstone, Rebecca A, von Gottberg, Anne, Veeraraghavan, Balaji et al (show 29 more authors) , Ravikumar, KL, Kandasamy, Rama, Pollard, Sir Andrew J, Saha, Samir K, Bigogo, Godfrey, Antonio, Martin, Kwambana-Adams, Brenda, Mirza, Shaper, Shakoor, Sadia, Nisar, Imran, Cornick, Jennifer E, Lehmann, Deborah, Ford, Rebecca L, Sigauque, Betuel, Turner, Paul, Moisi, Jennifer, Obaro, Stephen K, Dagan, Ron, Diawara, Idrissa, Skoczynska, Anna, Wang, Hui, Carter, Philip E, Klugman, Keith P, Rodgers, Gail, Breiman, Robert F, McGee, Lesley, Bentley, Stephen D, Munoz-Almagro, Carmen and Varon, Emmanuelle (2022) Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study. LANCET MICROBE, 3 (10). E735-E743.

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Lo, Stephanie W ORCID: 0000-0002-2182-0222, Gladstone, Rebecca A ORCID: 0000-0002-7993-3051, van Tonder, Andries J ORCID: 0000-0002-4380-5250, Hawkins, Paulina A, Kwambana-Adams, Brenda, Cornick, Jennifer E ORCID: 0000-0001-6841-9842, Madhi, Shabir A ORCID: 0000-0002-7629-0636, Nzenze, Susan A, du Plessis, Mignon ORCID: 0000-0001-9186-0679, Kandasamy, Rama et al (show 13 more authors) , Carter, Philip E, Eser, Özgen Köseoglu, Ho, Pak Leung ORCID: 0000-0002-8811-1308, Elmdaghri, Naima, Shakoor, Sadia, Clarke, Stuart C ORCID: 0000-0002-7009-1548, Antonio, Martin, Everett, Dean B ORCID: 0000-0002-8458-6779, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F and Bentley, Stephen D (2018) Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine. Journal of clinical microbiology, 56 (7). e00228-e00218.

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Azarian, Taj, Mitchell, Patrick K, Georgieva, Maria, Thompson, Claudette M, Ghouila, Amel, Pollard, Andrew J, von Gottberg, Anne, du Plessis, Mignon, Antonio, Martin, Kwambana-Adams, Brenda A et al (show 17 more authors) , Clarke, Stuart C, Everett, Dean, Cornick, Jennifer, Sadowy, Ewa, Hryniewicz, Waleria, Skoczynska, Anna, Moisi, Jennifer C, McGee, Lesley, Beail, Bernard, Metcalf, Benjamin J, Breiman, Robert F, Ho, PL, Reid, Raymond, O'Brien, Katherine L, Gladstone, Rebecca A, Bentley, Stephen D and Hanage, William P (2018) Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. PLOS PATHOGENS, 14 (11). e1007438-.

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Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Hinds, Jason, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Gould, Katherine A, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Msefula, Chisomo, Cornick, Jennifer E, Kulohoma, Benard W, Gray, Katherine, Bentley, Stephen D et al (show 3 more authors) , French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S and Everett, Dean B (2015) High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children. BMC INFECTIOUS DISEASES, 15 (1). 234-.

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Gladstone, Rebecca A, Lo, Stephanie W, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Corander, Jukka, Page, Andrew J, Marttinen, Pekka, Bentley, Leon J, Ochoa, Theresa J et al (show 16 more authors) , Ho, Pak Leung, du Plessis, Mignon, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, McGee, Lesley, Breiman, Robert F and Bentley, Stephen D (2019) International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBIOMEDICINE, 43. pp. 338-346.

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Kalizang'oma, Akuzike, Kwambana-Adams, Brenda, Chan, Jia Mun, Viswanath, Aishwarya, Gori, Andrea, Richard, Damien, Jolley, Keith A, Lees, John, Goldblatt, David, Beleza, Sandra et al (show 3 more authors) , Bentley, Stephen D, Heyderman, Robert S and Chaguza, Chrispin ORCID: 0000-0002-2108-1757 (2023) Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis. JOURNAL OF CLINICAL MICROBIOLOGY, 61 (1). e0080222-.

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Tonkin-Hill, Gerry, Martincorena, Inigo, Amato, Roberto, Lawson, Andrew RJ, Gerstung, Moritz, Johnston, Ian, Jackson, David K, Park, Naomi, Lensing, Stefanie V, Quail, Michael A et al (show 29 more authors) , Gonçalves, Sónia, Ariani, Cristina, Spencer Chapman, Michael, Hamilton, William L, Meredith, Luke W, Hall, Grant, Jahun, Aminu S, Chaudhry, Yasmin, Hosmillo, Myra, Pinckert, Malte L, Georgana, Iliana, Yakovleva, Anna, Caller, Laura G, Caddy, Sarah L, Feltwell, Theresa, Khokhar, Fahad A, Houldcroft, Charlotte J, Curran, Martin D, Parmar, Surendra, Alderton, Alex, Nelson, Rachel, Harrison, Ewan M, Sillitoe, John, Bentley, Stephen D, Barrett, Jeffrey C, Torok, M Estee, Goodfellow, Ian G, Langford, Cordelia and Kwiatkowski, Dominic (2021) Patterns of within-host genetic diversity in SARS-CoV-2. eLife, 10.

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Green, Angharad E ORCID: 0000-0002-8683-8191, Howarth, Deborah, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Echlin, Haley, Langendonk, R Fredi, Munro, Connor, Barton, Thomas E, Hinton, Jay CD, Bentley, Stephen D, Rosch, Jason W et al (show 1 more authors) and Neill, Daniel R ORCID: 0000-0002-7911-8153 (2021) Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models. MOLECULAR BIOLOGY AND EVOLUTION, 38 (6). pp. 2209-2226.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Lees, John A, du Plessis, Mignon, Benisty, Rachel, Givon-Lavi, Noga, Hawkins, Paulina A, Cornick, Jennifer E, Kwambana-Adams, Brenda et al (show 80 more authors) , Law, Pierra Y, Ho, Pak Leung, Antonio, Martin, Everett, Dean B, Dagan, Ron, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D, Brooks, Abdullah W, Corso, Alejandra, Davydov, Alexander, Maguire, Alison, Pollard, Andrew, Kiran, Anmol ORCID: 0000-0003-2680-2303, Skoczynska, Anna, Moiane, Benild, Beall, Bernard, Sigauque, Betuel, Aanensen, David, Lehmann, Deborah, Faccone, Diego, Faster-Nyarko, Ebenezer, Bojang, Ebrima, Egorova, Ekaterina, Voropaeva, Elena, Sampane-Donkor, Eric, Sadowy, Ewa, Bigogo, Godfrey, Mucavele, Helio, Belabbes, Houria, Diawara, Idrissa, Moisi, Jennifer, Verani, Jennifer, Keenan, Jeremy, Nair, Jyothish N, Bhai, Thulasee, Ndlangisa, Kedibone M, Zerouali, Khalid, Ravikumar, KL, Titov, Leonid, De Gouveia, Linda, Alaerts, Maaike, Ip, Margaret, Brandileone, Maria Cristina de Cunto, Hasanuzzaman, Md, Paragi, Metka, Nurse-Lucas, Michele, Ali, Mushal, Elmdaghri, Naima, Croucher, Nicholas, Wolter, Nicole, Porat, Nttrit, Eser, Ozgen Kaseoglu, Akpaka, Patrick E, Turner, Paul, Gagetti, Paula, Tientcheu, Peggy-Estelle, Carter, Philip E, Mostowy, Rafal, Kandasamy, Rarna, Ford, Rebecca, Henderson, Rebecca, Malaker, Roly, Shakoor, Sadia, Almeida, Samanta Cristine Grassi, Saha, Samir K, Doiphode, Sanjay, Madhi, Shabir A, Sekaran, Shamala Devi, Srifuengfung, Somporn, Obaro, Stephen, Clarke, Stuart C, Nzenze, Susan A, Kastrin, Tamara, Ochoa, Theresa J, Balaji, Veeraraghavan, Hryniewicz, Waleria and Urban, Yulia (2019) Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study. LANCET INFECTIOUS DISEASES, 19 (7). pp. 759-769.

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Tonkin-Hill, Gerry, Ling, Clare, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Salter, Susannah J, Hinfonthong, Pattaraporn, Nikolaou, Elissavet, Tate, Natalie, Pastusiak, Andrzej, Turner, Claudia, Chewapreecha, Claire et al (show 5 more authors) , Frost, Simon DW, Corander, Jukka, Croucher, Nicholas J, Turner, Paul and Bentley, Stephen D (2022) Pneumococcal within-host diversity during colonization, transmission and treatment. NATURE MICROBIOLOGY, 7 (11). 1791-+.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cornick, Jennifer E, Andam, Cheryl P, Gladstone, Rebecca A, Alaerts, Maaike, Musicha, Patrick, Peno, Chikondi, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Kiran, Anmol M ORCID: 0000-0003-2680-2303 et al (show 9 more authors) , Msefula, Chisomo L, McGee, Lesley, Breiman, Robert F, Kadioglu, Aras ORCID: 0000-0003-1137-6321, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S, Hanage, William P, Bentley, Stephen D and Everett, Dean B (2017) Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi. VACCINE, 35 (35). pp. 4594-4602.

Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Jamrozy, Dorota, Bijlsma, Merijn W, Kuijpers, Taco W, van de Beek, Diederik, van der Ende, Arie and Bentley, Stephen D (2022) Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion. NATURE COMMUNICATIONS, 13 (1). 4215-.

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van Tonder, Andries J, Gladstone, Rebecca A, Lo, Stephanie W, Nahm, Moon H, du Plessis, Mignon, Cornick, Jennifer, Kwambana-Adams, Brenda, Madhi, Shabir A, Hawkins, Paulina A, Benisty, Rachel et al (show 8 more authors) , Dagan, Ron, Everett, Dean, Antonio, Martin, Klugman, Keith P, von Gottbere, Anne, Breiman, Robert F, McGee, Lesley and Bentley, Stephen D (2019) Putative novel cps loci in a large global collection of pneumococci. MICROBIAL GENOMICS, 5 (7).

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Andam, Cheryl P, Harris, Simon R, Cornick, Jennifer E, Yang, Marie, Bricio-Moreno, Laura, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Parkhill, Julian, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S et al (show 4 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Everett, Dean B, Bentley, Stephen D and Hanage, William P (2016) Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule. MBIO, 7 (5). e01053-e01016.

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Ndlangisa, Kedibone M, du Plessis, Mignon, Lo, Stephanie, de Gouveia, Linda, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Antonio, Martin, Kwambana-Adams, Brenda, Cornick, Jennifer, Everett, Dean B, Dagan, Ron et al (show 32 more authors) , Hawkins, Paulina A, Beall, Bernard, Corso, Alejandra, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Obaro, Stephen, Shakoor, Sadia, Donkor, Eric S, Gladstone, Rebecca A, Ho, Pak Leung, Paragi, Metka, Doiphode, Sanjay, Srifuengfung, Somporn, Ford, Rebecca, Moisi, Jennifer, Saha, Samir K, Bigogo, Godfrey, Sigauque, Betuel, Eser, Ozgen Koseoglu, Elmdaghri, Naima, Titov, Leonid, Turner, Paul, Kumar, KL Ravi, Kandasamy, Rama, Egorova, Ekaterina, Ip, Margaret, Breiman, Robert F, Klugman, Keith P, McGee, Lesley, Bentley, Stephen D, von Gottberg, Anne and Con, Global Pneumococcal Sequencing (2022) A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. MICROBIAL GENOMICS, 8 (4).

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Kalizang'oma, Akuzike, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Gori, Andrea, Davison, Charlotte, Beleza, Sandra, Antonio, Martin, Beall, Bernard, Goldblatt, David, Kwambana-Adams, Brenda, Bentley, Stephen D et al (show 1 more authors) and Heyderman, Robert S (2021) Streptococcus pneumoniae serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from Streptococcus mitis. MICROBIAL GENOMICS, 7 (9).

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cornick, Jennifer E, Harris, Simon R, Andam, Cheryl P, Bricio-Moreno, Laura, Yang, Marie, Yalcin, Feyruz, Ousmane, Sani, Govindpersad, Shanil, Senghore, Madikay et al (show 19 more authors) , Ebruke, Chinelo, Du Plessis, Mignon, Kiran, Anmol M ORCID: 0000-0003-2680-2303, Pluschke, Gerd, Sigauque, Betuel, McGee, Lesley, Klugman, Keith P, Turner, Paul, Corander, Jukka, Parkhill, Julian, Collard, Jean-Marc, Antonio, Martin, von Gottberg, Anne, Heyderman, Robert S, French, Neil ORCID: 0000-0003-4814-8293, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Hanage, William P, Everett, Dean B and Bentley, Stephen D (2016) Understanding pneumococcal serotype 1 biology through population genomic analysis. BMC INFECTIOUS DISEASES, 16 (1). 649-.

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Gladstone, Rebecca A, Lo, Stephanie W, Goater, Richard, Yeats, Corin, Taylor, Ben, Hadfield, James, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Bentley, Leon J et al (show 32 more authors) , Quah, Fu Xiang, Blaschke, Anne J, Pershing, Nicole L, Byington, Carrie L, Balaji, Veeraraghavan, Hryniewicz, Waleria, Sigauque, Betuel, Ravikumar, KL, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Ho, Pak Leung, du Plessis, Mignon, Ndlangisa, Kedibone M, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Pollard, Andrew J, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, Metcalf, Benjamin J, Li, Yuan, Beall, Bernard W, McGee, Lesley, Breiman, Robert F, Aanensen, David M and Bentley, Stephen D (2020) Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. MICROBIAL GENOMICS, 6 (5). e000357-.

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Senghore, Madikay, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Bojang, Ebrima, Tientcheu, Peggy-Estelle, Bancroft, Rowan E, Lo, Stephanie W, Gladstone, Rebecca A, McGee, Lesley, Worwui, Archibald, Foster-Nyarko, Ebenezer et al (show 9 more authors) , Ceesay, Fatima, Okoi, Catherine Bi, Klugman, Keith P, Breiman, Robert F, Bentley, Stephen D, Adegbola, Richard, Antonio, Martin, Hanage, William P and Kwambana-Adams, Brenda A (2022) Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints. MICROBIAL GENOMICS, 8 (2).

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Senghore, Madikay, Bojang, Ebrima, Gladstone, Rebecca A, Lo, Stephanie W, Tientcheu, Peggy-Estelle, Bancroft, Rowan E, Worwui, Archibald, Foster-Nyarko, Ebenezer, Ceesay, Fatima et al (show 9 more authors) , Okoi, Catherine, McGee, Lesley, Klugman, Keith P, Breiman, Robert F, Barer, Michael R, Adegbola, Richard A, Antonio, Martin, Bentley, Stephen D and Kwambana-Adams, Brenda A (2020) Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation. NATURE COMMUNICATIONS, 11 (1). 3442-.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Du Plessis, Mignon, Cornick, Jennifer E, Hawkins, Paulina A, Madhi, Shabir A, Nzenze, Susan A, Kandasamy, Rama, Ravikumar, KL et al (show 18 more authors) , Elmdaghri, Naima, Kwambana-Adams, Brenda, Grassi Almeida, Samanta Cristine, Skoczynska, Anna, Egorova, Ekaterina, Titov, Leonid, Saha, Samir K, Paragi, Metka, Everett, Dean B, Antonio, Martin, Klugman, Keith P, Li, Yuan, Metcalf, Benjamin J, Beall, Bernard, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D and von Gottberg, Anne (2020) A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 75 (3). pp. 512-520.

Belman, Sophie, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Kumar, Narender, Lo, Stephanie and Bentley, Stephen D (2022) A new perspective on ancient Mitis group streptococcal genetics. MICROBIAL GENOMICS, 8 (2).