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Walker, Joseph ORCID: 0000-0001-6130-8189, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Grubaugh, Nathan D ORCID: 0000-0003-2031-1933, Carey, Megan ORCID: 0000-0002-7797-9080, Baker, Stephen, Khan, Kamran, Bogoch, Isaac I and Pitzer, Virginia E ORCID: 0000-0003-1015-2289 (2023) Assessing the global risk of typhoid outbreaks caused by extensively drug resistant Salmonella Typhi. Nature communications, 14 (1). 6502-.

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McCrone, John T ORCID: 0000-0002-9846-8917, Hill, Verity, Bajaj, Sumali, Pena, Rosario Evans, Lambert, Ben C ORCID: 0000-0003-4274-4158, Inward, Rhys ORCID: 0000-0003-0016-661X, Bhatt, Samir ORCID: 0000-0002-0891-4611, Volz, Erik ORCID: 0000-0001-6268-8937, Ruis, Christopher ORCID: 0000-0003-0977-5534, Dellicour, Simon et al (show 32 more authors) , Baele, Guy ORCID: 0000-0002-1915-7732, Zarebski, Alexander E, Sadilek, Adam ORCID: 0000-0003-0784-7098, Wu, Neo, Schneider, Aaron, Ji, Xiang ORCID: 0000-0002-7243-0865, Raghwani, Jayna, Jackson, Ben ORCID: 0000-0002-9981-0649, Colquhoun, Rachel ORCID: 0000-0002-5577-9897, O'Toole, Áine, Peacock, Thomas P ORCID: 0000-0001-7077-2928, Twohig, Kate, Thelwall, Simon ORCID: 0000-0002-0434-2724, Dabrera, Gavin, Myers, Richard, COVID-19 Genomics UK (COG-UK) Consortium, , Faria, Nuno R ORCID: 0000-0002-9747-8822, Faria, Nuno R ORCID: 0000-0001-8839-2798, Huber, Carmen, Bogoch, Isaac I, Khan, Kamran, du Plessis, Louis ORCID: 0000-0003-0352-6289, Barrett, Jeffrey C, Aanensen, David M, Barclay, Wendy S ORCID: 0000-0002-3948-0895, Chand, Meera, Connor, Thomas ORCID: 0000-0003-2394-6504, Loman, Nicholas J, Suchard, Marc A ORCID: 0000-0001-9818-479X, Pybus, Oliver G ORCID: 0000-0002-8797-2667, Rambaut, Andrew ORCID: 0000-0003-4337-3707 and Kraemer, Moritz UG ORCID: 0000-0001-8838-7147 (2022) Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature, 610 (7930). pp. 154-160.

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du Plessis, Louis ORCID: 0000-0003-0352-6289, McCrone, John T ORCID: 0000-0002-9846-8917, Zarebski, Alexander E ORCID: 0000-0003-1824-7653, Hill, Verity ORCID: 0000-0002-3509-8146, Ruis, Christopher ORCID: 0000-0003-0977-5534, Gutierrez, Bernardo ORCID: 0000-0002-9220-2739, Raghwani, Jayna ORCID: 0000-0001-8538-4995, Ashworth, Jordan ORCID: 0000-0003-1740-7475, Colquhoun, Rachel ORCID: 0000-0002-5577-9897, Connor, Thomas R ORCID: 0000-0003-2394-6504 et al (show 17 more authors) , Faria, Nuno R ORCID: 0000-0001-8839-2798, Jackson, Ben ORCID: 0000-0002-9981-0649, Loman, Nicholas J ORCID: 0000-0002-9843-8988, O'Toole, Áine ORCID: 0000-0001-8083-474X, Nicholls, Samuel M ORCID: 0000-0003-4081-065X, Parag, Kris V ORCID: 0000-0002-7806-3605, Scher, Emily ORCID: 0000-0002-5401-5879, Vasylyeva, Tetyana I, Volz, Erik M ORCID: 0000-0001-6268-8937, Watts, Alexander ORCID: 0000-0002-2675-3460, Bogoch, Isaac I, Khan, Kamran ORCID: 0000-0003-4367-960X, COVID-19 Genomics UK (COG-UK) Consortium, , Aanensen, David M ORCID: 0000-0001-6688-0854, Kraemer, Moritz UG ORCID: 0000-0001-8838-7147, Rambaut, Andrew ORCID: 0000-0003-4337-3707 and Pybus, Oliver G ORCID: 0000-0002-8797-2667 (2021) Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science (New York, N.Y.), 371 (6530). pp. 708-712.

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Carey, Megan E ORCID: 0000-0002-7797-9080, Dyson, Zoe A ORCID: 0000-0002-8887-3492, Ingle, Danielle J, Amir, Afreenish, Aworh, Mabel K, Chattaway, Marie Anne, Chew, Ka Lip, Crump, John A ORCID: 0000-0002-4529-102X, Feasey, Nicholas A, Howden, Benjamin P ORCID: 0000-0003-0237-1473 et al (show 105 more authors) , Keddy, Karen H, Maes, Mailis, Parry, Christopher M ORCID: 0000-0001-7563-7282, Van Puyvelde, Sandra ORCID: 0000-0001-8434-5732, Webb, Hattie E ORCID: 0000-0002-1190-7930, Afolayan, Ayorinde Oluwatobiloba ORCID: 0000-0003-1405-2365, Alexander, Anna P, Anandan, Shalini, Andrews, Jason R ORCID: 0000-0002-5967-251X, Ashton, Philip M, Basnyat, Buddha, Bavdekar, Ashish, Bogoch, Isaac I, Clemens, John D, da Silva, Kesia Esther, De, Anuradha ORCID: 0000-0002-8701-4100, de Ligt, Joep, Diaz Guevara, Paula Lucia ORCID: 0000-0002-8252-5622, Dolecek, Christiane, Dutta, Shanta, Ehlers, Marthie M, Francois Watkins, Louise ORCID: 0000-0002-1165-1162, Garrett, Denise O, Godbole, Gauri, Gordon, Melita A ORCID: 0000-0002-0629-0884, Greenhill, Andrew R, Griffin, Chelsey, Gupta, Madhu, Hendriksen, Rene S, Heyderman, Robert S, Hooda, Yogesh, Hormazabal, Juan Carlos, Ikhimiukor, Odion O ORCID: 0000-0002-3738-4584, Iqbal, Junaid ORCID: 0000-0002-5014-2176, Jacob, Jobin John, Jenkins, Claire, Jinka, Dasaratha Ramaiah ORCID: 0000-0002-8184-279X, John, Jacob ORCID: 0000-0003-3654-5099, Kang, Gagandeep ORCID: 0000-0002-3656-564X, Kanteh, Abdoulie, Kapil, Arti, Karkey, Abhilasha, Kariuki, Samuel ORCID: 0000-0003-3209-9503, Kingsley, Robert A, Koshy, Roshine Mary, Lauer, AC, Levine, Myron M, Lingegowda, Ravikumar Kadahalli, Luby, Stephen P, Mackenzie, Grant Austin, Mashe, Tapfumanei, Msefula, Chisomo ORCID: 0000-0003-2304-886X, Mutreja, Ankur, Nagaraj, Geetha, Nagaraj, Savitha, Nair, Satheesh ORCID: 0000-0002-7297-1485, Naseri, Take K, Nimarota-Brown, Susana, Njamkepo, Elisabeth, Okeke, Iruka N ORCID: 0000-0002-1694-7587, Perumal, Sulochana Putli Bai, Pollard, Andrew J, Pragasam, Agila Kumari, Qadri, Firdausi, Qamar, Farah N, Rahman, Sadia Isfat Ara, Rambocus, Savitra Devi, Rasko, David A, Ray, Pallab, Robins-Browne, Roy, Rongsen-Chandola, Temsunaro, Rutanga, Jean Pierre ORCID: 0000-0002-5273-6170, Saha, Samir K ORCID: 0000-0003-3820-0748, Saha, Senjuti ORCID: 0000-0001-6087-6766, Saigal, Karnika, Sajib, Mohammad Saiful Islam, Seidman, Jessica C, Shakya, Jivan, Shamanna, Varun, Shastri, Jayanthi, Shrestha, Rajeev, Sia, Sonia, Sikorski, Michael J, Singh, Ashita, Smith, Anthony M, Tagg, Kaitlin A, Tamrakar, Dipesh, Tanmoy, Arif Mohammed, Thomas, Maria, Thomas, Mathew S, Thomsen, Robert, Thomson, Nicholas R, Tupua, Siaosi, Vaidya, Krista, Valcanis, Mary, Veeraraghavan, Balaji, Weill, François-Xavier, Wright, Jackie, Dougan, Gordon, Argimón, Silvia, Keane, Jacqueline A, Aanensen, David M ORCID: 0000-0001-6688-0854, Baker, Stephen, Holt, Kathryn E ORCID: 0000-0003-3949-2471 and Global Typhoid Genomics Consortium Group Authorship, (2023) Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 <i>Salmonella</i> Typhi genomes. eLife, 12. e85867-.