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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Yang, Marie, Cornick, Jennifer E, du Plessis, Mignon, Gladstone, Rebecca A, Kwambana-Adams, Brenda A, Lo, Stephanie W, Ebruke, Chinelo, Tonkin-Hill, Gerry, Peno, Chikondi et al (show 16 more authors) , Senghore, Madikay, Obaro, Stephen K, Ousmane, Sani, Pluschke, Gerd, Collard, Jean-Marc, Sigauque, Betuel, French, Neil ORCID: 0000-0003-4814-8293, Klugman, Keith P, Heyderman, Robert S, McGee, Lesley, Antonio, Martin, Breiman, Robert F, von Gottberg, Anne, Everett, Dean B, Kadioglu, Aras ORCID: 0000-0003-1137-6321 and Bentley, Stephen D (2020) Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. COMMUNICATIONS BIOLOGY, 3 (1). 559-.

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Bennett, Julia C, Hetrich, Marissa K, Quesada, Maria Garcia, Sinkevitch, Jenna N, Knoll, Maria Deloria, Feikin, Daniel R, Zeger, Scott L, Kagucia, Eunice W, Cohen, Adam L, Ampofo, Krow et al (show 51 more authors) , Brandileone, Maria-Cristina C, Bruden, Dana, Camilli, Romina, Castilla, Jesus, Chan, Guanhao, Cook, Heather, Cornick, Jennifer E, Dagan, Ron, Dalby, Tine, Danis, Kostas, de Miguel, Sara, De Wals, Philippe, Desmet, Stefanie, Georgakopoulou, Theano, Gilkison, Charlotte, Grgic-Vitek, Marta, Hammitt, Laura L, Hilty, Markus, Ho, Pak-Leung, Jayasinghe, Sanjay, Kellner, James D, Kleynhans, Jackie, Knol, Mirjam J, Kozakova, Jana, Kristinsson, Karl G, Ladhani, Shamez N, MacDonald, Laura, Mackenzie, Grant A, Mad'arova, Lucia, McGeer, Allison, Mereckiene, Jolita, Morfeldt, Eva, Mungun, Tuya, Munoz-Almagro, Carmen, Nuorti, J Pekka, Paragi, Metka, Pilishvili, Tamara, Puentes, Rodrigo, Saha, Samir K, Khan, Aalisha Sahu, Savrasova, Larisa, Scott, J Anthony, Skoczynska, Anna, Suga, Shigeru, van der Linden, Mark, Verani, Jennifer R, von Gottberg, Anne, Winje, Brita A, Yildirim, Inci, Zerouali, Khalid and Hayford, Kyla (2021) Changes in Invasive Pneumococcal Disease Caused by Streptococcus pneumoniae Serotype 1 following Introduction of PCV10 and PCV13: Findings from the PSERENADE Project. MICROORGANISMS, 9 (4). 696-.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Ebruke, Chinelo, Senghore, Madikay, Lo, Stephanie W, Tientcheu, Peggy-Estelle, Gladstone, Rebecca A, Tonkin-Hill, Gerry, Cornick, Jennifer E, Yang, Marie, Worwui, Archibald et al (show 11 more authors) , McGee, Lesley, Breiman, Robert F, Klugman, Keith P, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Everett, Dean B, Mackenzie, Grant, Croucher, Nicholas J, Roca, Anna, Kwambana-Adams, Brenda A, Antonio, Martin and Bentley, Stephen D (2022) Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci. GENOME BIOLOGY AND EVOLUTION, 14 (4). evac052-.

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Lo, Stephanie W, Mellor, Kate, Cohen, Robert, Alonso, Alba Redin, Belman, Sophie, Kumar, Narender, Hawkins, Paulina A, Gladstone, Rebecca A, von Gottberg, Anne, Veeraraghavan, Balaji et al (show 29 more authors) , Ravikumar, KL, Kandasamy, Rama, Pollard, Sir Andrew J, Saha, Samir K, Bigogo, Godfrey, Antonio, Martin, Kwambana-Adams, Brenda, Mirza, Shaper, Shakoor, Sadia, Nisar, Imran, Cornick, Jennifer E, Lehmann, Deborah, Ford, Rebecca L, Sigauque, Betuel, Turner, Paul, Moisi, Jennifer, Obaro, Stephen K, Dagan, Ron, Diawara, Idrissa, Skoczynska, Anna, Wang, Hui, Carter, Philip E, Klugman, Keith P, Rodgers, Gail, Breiman, Robert F, McGee, Lesley, Bentley, Stephen D, Munoz-Almagro, Carmen and Varon, Emmanuelle (2022) Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study. LANCET MICROBE, 3 (10). E735-E743.

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Cornick, Jennifer E, Kiran, Anmol M ORCID: 0000-0003-2680-2303, Vivancos, Roberto, Van Aartsen, Jon, Clarke, Jenny, Bevan, Edward, Alsahag, Mansoor, Alaearts, Maaike, Moreno, Laura Bricio, Jenkinson, Howard F et al (show 5 more authors) , Nobbs, Angela H, Anson, James, Kadioglu, Aras ORCID: 0000-0003-1137-6321, French, Neil ORCID: 0000-0003-4814-8293 and Everett, Dean B (2018) Epidemiological and Molecula Characterization of an Invasive Group A Streptococcus emm32.2 Outbreak (vol 55, pg 1837, 2017). JOURNAL OF CLINICAL MICROBIOLOGY, 56 (9). e01001-e01018.

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Cornick, Jennifer E, Kiran, Anmol M ORCID: 0000-0003-2680-2303, Vivancos, Roberto, Van Aartsen, Jon, Clarke, Jenny, Bevan, Edward, Alsahag, Mansoor, Alaearts, Maaike, Moreno, Laura Bricio, Jenkinson, Howard F et al (show 5 more authors) , Nobbs, Angela H, Anson, James, Kadiolgu, Aras, French, Neil ORCID: 0000-0003-4814-8293 and Everett, Dean B (2017) Epidemiological and Molecular Characterization of an Invasive Group A Streptococcus emm32.2 Outbreak. Journal of Clinical Microbiology, 55 (6). pp. 1837-1846.

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Lo, Stephanie W ORCID: 0000-0002-2182-0222, Gladstone, Rebecca A ORCID: 0000-0002-7993-3051, van Tonder, Andries J ORCID: 0000-0002-4380-5250, Hawkins, Paulina A, Kwambana-Adams, Brenda, Cornick, Jennifer E ORCID: 0000-0001-6841-9842, Madhi, Shabir A ORCID: 0000-0002-7629-0636, Nzenze, Susan A, du Plessis, Mignon ORCID: 0000-0001-9186-0679, Kandasamy, Rama et al (show 13 more authors) , Carter, Philip E, Eser, Özgen Köseoglu, Ho, Pak Leung ORCID: 0000-0002-8811-1308, Elmdaghri, Naima, Shakoor, Sadia, Clarke, Stuart C ORCID: 0000-0002-7009-1548, Antonio, Martin, Everett, Dean B ORCID: 0000-0002-8458-6779, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F and Bentley, Stephen D (2018) Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine. Journal of clinical microbiology, 56 (7). e00228-e00218.

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Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Hinds, Jason, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Gould, Katherine A, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Msefula, Chisomo, Cornick, Jennifer E, Kulohoma, Benard W, Gray, Katherine, Bentley, Stephen D et al (show 3 more authors) , French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S and Everett, Dean B (2015) High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children. BMC INFECTIOUS DISEASES, 15 (1). 234-.

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Gladstone, Rebecca A, Lo, Stephanie W, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Corander, Jukka, Page, Andrew J, Marttinen, Pekka, Bentley, Leon J, Ochoa, Theresa J et al (show 16 more authors) , Ho, Pak Leung, du Plessis, Mignon, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, McGee, Lesley, Breiman, Robert F and Bentley, Stephen D (2019) International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBIOMEDICINE, 43. pp. 338-346.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Lees, John A, du Plessis, Mignon, Benisty, Rachel, Givon-Lavi, Noga, Hawkins, Paulina A, Cornick, Jennifer E, Kwambana-Adams, Brenda et al (show 80 more authors) , Law, Pierra Y, Ho, Pak Leung, Antonio, Martin, Everett, Dean B, Dagan, Ron, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D, Brooks, Abdullah W, Corso, Alejandra, Davydov, Alexander, Maguire, Alison, Pollard, Andrew, Kiran, Anmol ORCID: 0000-0003-2680-2303, Skoczynska, Anna, Moiane, Benild, Beall, Bernard, Sigauque, Betuel, Aanensen, David, Lehmann, Deborah, Faccone, Diego, Faster-Nyarko, Ebenezer, Bojang, Ebrima, Egorova, Ekaterina, Voropaeva, Elena, Sampane-Donkor, Eric, Sadowy, Ewa, Bigogo, Godfrey, Mucavele, Helio, Belabbes, Houria, Diawara, Idrissa, Moisi, Jennifer, Verani, Jennifer, Keenan, Jeremy, Nair, Jyothish N, Bhai, Thulasee, Ndlangisa, Kedibone M, Zerouali, Khalid, Ravikumar, KL, Titov, Leonid, De Gouveia, Linda, Alaerts, Maaike, Ip, Margaret, Brandileone, Maria Cristina de Cunto, Hasanuzzaman, Md, Paragi, Metka, Nurse-Lucas, Michele, Ali, Mushal, Elmdaghri, Naima, Croucher, Nicholas, Wolter, Nicole, Porat, Nttrit, Eser, Ozgen Kaseoglu, Akpaka, Patrick E, Turner, Paul, Gagetti, Paula, Tientcheu, Peggy-Estelle, Carter, Philip E, Mostowy, Rafal, Kandasamy, Rarna, Ford, Rebecca, Henderson, Rebecca, Malaker, Roly, Shakoor, Sadia, Almeida, Samanta Cristine Grassi, Saha, Samir K, Doiphode, Sanjay, Madhi, Shabir A, Sekaran, Shamala Devi, Srifuengfung, Somporn, Obaro, Stephen, Clarke, Stuart C, Nzenze, Susan A, Kastrin, Tamara, Ochoa, Theresa J, Balaji, Veeraraghavan, Hryniewicz, Waleria and Urban, Yulia (2019) Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study. LANCET INFECTIOUS DISEASES, 19 (7). pp. 759-769.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cornick, Jennifer E, Andam, Cheryl P, Gladstone, Rebecca A, Alaerts, Maaike, Musicha, Patrick, Peno, Chikondi, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Kiran, Anmol M ORCID: 0000-0003-2680-2303 et al (show 9 more authors) , Msefula, Chisomo L, McGee, Lesley, Breiman, Robert F, Kadioglu, Aras ORCID: 0000-0003-1137-6321, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S, Hanage, William P, Bentley, Stephen D and Everett, Dean B (2017) Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi. VACCINE, 35 (35). pp. 4594-4602.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Andam, Cheryl P, Harris, Simon R, Cornick, Jennifer E, Yang, Marie, Bricio-Moreno, Laura, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Parkhill, Julian, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S et al (show 4 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Everett, Dean B, Bentley, Stephen D and Hanage, William P (2016) Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule. MBIO, 7 (5). e01053-e01016.

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Musicha, Patrick, Cornick, Jennifer E, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, French, Neil ORCID: 0000-0003-4814-8293, Masesa, Clemens, Denis, Brigitte, Kennedy, Neil, Mallewa, Jane, Gordon, Melita A ORCID: 0000-0002-0629-0884, Msefula, Chisomo L et al (show 3 more authors) , Heyderman, Robert S, Everett, Dean B and Feasey, Nicholas A (2017) Trends in antimicrobial resistance in bloodstream infection isolates at a large urban hospital in Malawi (1998-2016): a surveillance study. LANCET INFECTIOUS DISEASES, 17 (10). pp. 1042-1052.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cornick, Jennifer E, Harris, Simon R, Andam, Cheryl P, Bricio-Moreno, Laura, Yang, Marie, Yalcin, Feyruz, Ousmane, Sani, Govindpersad, Shanil, Senghore, Madikay et al (show 19 more authors) , Ebruke, Chinelo, Du Plessis, Mignon, Kiran, Anmol M ORCID: 0000-0003-2680-2303, Pluschke, Gerd, Sigauque, Betuel, McGee, Lesley, Klugman, Keith P, Turner, Paul, Corander, Jukka, Parkhill, Julian, Collard, Jean-Marc, Antonio, Martin, von Gottberg, Anne, Heyderman, Robert S, French, Neil ORCID: 0000-0003-4814-8293, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Hanage, William P, Everett, Dean B and Bentley, Stephen D (2016) Understanding pneumococcal serotype 1 biology through population genomic analysis. BMC INFECTIOUS DISEASES, 16 (1). 649-.

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Gladstone, Rebecca A, Lo, Stephanie W, Goater, Richard, Yeats, Corin, Taylor, Ben, Hadfield, James, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Bentley, Leon J et al (show 32 more authors) , Quah, Fu Xiang, Blaschke, Anne J, Pershing, Nicole L, Byington, Carrie L, Balaji, Veeraraghavan, Hryniewicz, Waleria, Sigauque, Betuel, Ravikumar, KL, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Ho, Pak Leung, du Plessis, Mignon, Ndlangisa, Kedibone M, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Pollard, Andrew J, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, Metcalf, Benjamin J, Li, Yuan, Beall, Bernard W, McGee, Lesley, Breiman, Robert F, Aanensen, David M and Bentley, Stephen D (2020) Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. MICROBIAL GENOMICS, 6 (5). e000357-.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Du Plessis, Mignon, Cornick, Jennifer E, Hawkins, Paulina A, Madhi, Shabir A, Nzenze, Susan A, Kandasamy, Rama, Ravikumar, KL et al (show 18 more authors) , Elmdaghri, Naima, Kwambana-Adams, Brenda, Grassi Almeida, Samanta Cristine, Skoczynska, Anna, Egorova, Ekaterina, Titov, Leonid, Saha, Samir K, Paragi, Metka, Everett, Dean B, Antonio, Martin, Klugman, Keith P, Li, Yuan, Metcalf, Benjamin J, Beall, Bernard, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D and von Gottberg, Anne (2020) A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 75 (3). pp. 512-520.