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Cunningham-Oakes, Edward ORCID: 0000-0003-0260-5508 and Trivett, Hannah (2022) Applied Bioinformatics and Public Health Microbiology: challenges, discoveries and innovations during a pandemic. MICROBIAL GENOMICS, 8 (1).

Cunningham-Oakes, Edward ORCID: 0000-0003-0260-5508, Bronowski, Christina ORCID: 0000-0001-8089-4021, Chinyama, End, Jere, Khuzwayo C ORCID: 0000-0003-3376-8529, Sindhu, Kulandaipalayam Natarajan C, Kang, Gagandeep, Iturriza-Gómara, Miren, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Parker, Edward PK (2023) Increased bacterial taxonomic and functional diversity is associated with impaired rotavirus vaccine immunogenicity in infants from India and Malawi. BMC microbiology, 23 (1). 354-.

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Wheeler, Nicole E, Price, Vivien ORCID: 0000-0003-3573-5106, Cunningham-Oakes, Edward ORCID: 0000-0003-0260-5508, Tsang, Kara K, Nunn, Jamie G, Midega, Janet T, Anjum, Muna F, Wade, Matthew J, Feasey, Nicholas A, Peacock, Sharon J et al (show 3 more authors) , Jauneikaite, Elita ORCID: 0000-0002-7075-6896, Baker, Kate S ORCID: 0000-0001-5850-1949 and SEDRIC Genomics Surveillance Working Group, (2023) Innovations in genomic antimicrobial resistance surveillance. The Lancet. Microbe, 4 (12). e1063-e1070.

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Weiser, Rebecca, Green, Angharad E ORCID: 0000-0002-8683-8191, Bull, Matthew J, Cunningham-Oakes, Edward ORCID: 0000-0003-0260-5508, Jolley, Keith A, Maiden, Martin CJ, Hall, Amanda J, Winstanley, Craig ORCID: 0000-0002-2662-8053, Weightman, Andrew J, Donoghue, Denise et al (show 3 more authors) , Amezquita, Alejandro, Connor, Thomas R and Mahenthiralingam, Eshwar (2019) Not all <i>Pseudomonas aeruginosa</i> are equal: strains from industrial sources possess uniquely large multireplicon genomes. MICROBIAL GENOMICS, 5 (7).

Cunningham-Oakes, Edward ORCID: 0000-0003-0260-5508, Pointon, Tom, Murphy, Barry, Campbell-Lee, Stuart, Connor, Thomas R and Mahenthiralingam, Eshwar (2022) Novel application of metagenomics for the strain-level detection of bacterial contaminants within non-sterile industrial products - a retrospective, real-time analysis. MICROBIAL GENOMICS, 8 (11).

Johnston, Emily J, Tallis, Jess, Cunningham-Oakes, Edward ORCID: 0000-0003-0260-5508, Moses, Tessa, Moore, Simon J, Hosking, Sarah and Rosser, Susan J (2023) Yeast lacking the sterol C-5 desaturase Erg3 are tolerant to the anti-inflammatory triterpenoid saponin escin. Scientific reports, 13 (1). p. 13617.