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Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Prince, Tessa ORCID: 0000-0002-8796-2629, Randle, Nadine ORCID: 0000-0002-3775-9585, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Salguero, Francisco J, Tree, Julia, Vamos, Ecaterina, Nelson, Charlotte et al (show 11 more authors) , Clark, Jordan, Ryan, Yan, Stewart, James P ORCID: 0000-0002-8928-2037, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Baillie, J Kenneth, Openshaw, Peter JM, Turtle, Lance ORCID: 0000-0002-0778-1693, Matthews, David A, Carroll, Miles W, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2022) Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers. GIGASCIENCE, 11. giac045-.

Radford, Alan D ORCID: 0000-0002-4590-1334, Chapman, David, Dixon, Linda, Chantrey, Julian ORCID: 0000-0002-4801-7034, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Hall, Neil (2012) Application of next-generation sequencing technologies in virology. JOURNAL OF GENERAL VIROLOGY, 93 (Pt 9). pp. 1853-1868.

Esemu, Seraphine N, Dong, Xiaofeng, Kfusi, Achah J, Hartley, Catherine S, Ndip, Roland N, Ndip, Lucy M, Darby, Alistair C ORCID: 0000-0002-3786-6209, Post, Rory J and Makepeace, Benjamin L ORCID: 0000-0002-6100-6727 (2019) Aquatic Hemiptera in Southwest Cameroon: Biodiversity of Potential Reservoirs of <i>Mycobacterium ulcerans</i> and Multiple <i>Wolbachia</i> Sequence Types Revealed by Metagenomics. DIVERSITY-BASEL, 11 (12). p. 225.

Martin Říhová, Jana, Gupta, Shruti, Darby, Alistair C ORCID: 0000-0002-3786-6209, Nováková, Eva and Hypša, Václav (2023) Arsenophonus symbiosis with louse flies: multiple origins, coevolutionary dynamics, and metabolic significance. mSystems, 8 (5). e0070623-e0070623.

Mandolo, Jonathan ORCID: 0000-0003-0143-7469, Parker, Edward PK ORCID: 0000-0001-5847-109X, Bronowski, Christina ORCID: 0000-0001-8089-4021, Sindhu, Kulandaipalayam Natarajan C, Darby, Alistair C, Cunliffe, Nigel A, Kang, Gagandeep ORCID: 0000-0002-3656-564X, Iturriza-Gómara, Miren, Kamng’ona, Arox W and Jere, Khuzwayo C ORCID: 0000-0003-3376-8529 (2022) Association between maternal breastmilk microbiota composition and rotavirus vaccine response in African, Asian, and European infants: a prospective cohort study. [Preprint]

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Mandolo, Jonathan, Parker, Edward PK, Bronowski, Christina ORCID: 0000-0001-8089-4021, Sindhu, Kulandaipalayam Natarajan C, Darby, Alistair C ORCID: 0000-0002-3786-6209, Cunliffe, Nigel A ORCID: 0000-0002-5449-4988, Kang, Gagandeep, Iturriza-Gómara, Miren, Kamng’ona, Arox W, Jere, Khuzwayo C ORCID: 0000-0003-3376-8529 et al (show 19 more authors) , Babji, Sudhir, Benny, Blossom, Carmona-Vicente, Noelia, Chasweka, Nedson, Chinyama, End, Dube, Queen, Giri, Sidhartha, Grassly, Nicholas C, Gunasekaran, Annai, Howarth, Deborah, Immanuel, Sushil, Lowe, Jenna, Praharaj, Ira, Rani, Bakthavatsalam Sandya, Silas, Sophia, Srinivasan, Vivek Kumar, Turner, Mark ORCID: 0000-0002-5299-8656, Venugopal, Srinivasan and Verghese, Valsan Philip (2023) Association between maternal breastmilk microbiota composition and rotavirus vaccine response in African, Asian, and European infants: a prospective cohort study. The Journal of Infectious Diseases, 228 (5). pp. 637-645.

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Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Rzeszutek, Aleksandra M, Pilgrim, Jack, Bullock, Katie, Saunders, Geoffrey, Northey, Josh, Dong, Xiaofeng, Ryan, Yan ORCID: 0000-0002-4708-5350 et al (show 24 more authors) , Reynolds, Helen ORCID: 0000-0001-7443-4520, Tetlow, Michelle, Walker, Lauren E, FitzGerald, Richard, Hale, Colin, Lyon, Rebecca, Woods, Christie, Ahmad, Shazaad, Hadjiyiannakis, Dennis, Periselneris, Jimstan, Knox, Emma, Middleton, Calley, Lavelle-Langham, Lara, Shaw, Victoria ORCID: 0000-0002-0429-0186, Greenhalf, William, Edwards, Thomas, Lalloo, David G ORCID: 0000-0001-7680-2200, Edwards, Christopher J, Darby, Alistair C ORCID: 0000-0002-3786-6209, Carroll, Miles W, Griffiths, Gareth, Khoo, Saye H ORCID: 0000-0002-2769-0967, Hiscox, Julian A ORCID: 0000-0002-6582-0275 and Fletcher, Thomas (2022) Characterisation of SARS-CoV-2 genomic variation in response to molnupiravir treatment in the AGILE Phase IIa clinical trial. NATURE COMMUNICATIONS, 13 (1). 7284-.

Coates-Brown, Rosanna, Moran, Josephine C, Pongchaikul, Pisut ORCID: 0000-0001-8757-3554, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Horsburgh, Malcolm J ORCID: 0000-0002-3806-0039 (2018) Comparative Genomics of <i>Staphylococcus</i> Reveals Determinants of Speciation and Diversification of Antimicrobial Defense. FRONTIERS IN MICROBIOLOGY, 9 (NOV). 2753-.

Kelly, Daniel, Jere, Khuzwayo C ORCID: 0000-0003-3376-8529, Darby, Alistair C ORCID: 0000-0002-3786-6209, Allen, David J and Iturriza-Gómara, Miren (2021) Complete genome characterization of human noroviruses allows comparison of minor alleles during acute and chronic infections. Access Microbiology, 3 (3). 000203-.

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Frau, Alessandra ORCID: 0000-0002-6885-1042, Kenny, John G, Lenzi, Luca ORCID: 0000-0003-2697-691X, Campbell, Barry J ORCID: 0000-0002-7407-012X, Ijaz, Umer Z, Duckworth, Carrie A ORCID: 0000-0001-9992-7540, Burkitt, Michael D ORCID: 0000-0002-5055-6408, Hall, Neil, Anson, Jim, Darby, Alistair C ORCID: 0000-0002-3786-6209 et al (show 1 more authors) and Probert, Christopher SJ ORCID: 0000-0003-4550-0239 (2019) DNA extraction and amplicon production strategies deeply influence the outcome of gut mycobiome studies. SCIENTIFIC REPORTS, 9 (1). 9328-.

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Lefoulon, Emilie, Clark, Travis, Guerrero, Ricardo, Cañizales, Israel, Cardenas-Callirgos, Jorge Manuel, Junker, Kerstin, Vallarino-Lhermitte, Nathaly, Makepeace, Benjamin L ORCID: 0000-0002-6100-6727, Darby, Alistair C ORCID: 0000-0002-3786-6209, Foster, Jeremy M et al (show 2 more authors) , Martin, Coralie and Slatko, Barton E (2020) Diminutive, degraded but dissimilar: <i>Wolbachia</i> genomes from filarial nematodes do not conform to a single paradigm. Microbial genomics, 6 (12). pp. 1-21.

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Wright, Elli A, Di Lorenzo, Valeria, Trappetti, Claudia, Liciardi, Manuele, Orru, Germano, Viti, Carlo, Bronowski, Christina ORCID: 0000-0001-8089-4021, Hall, Amanda J, Darby, Alistair C ORCID: 0000-0002-3786-6209, Oggioni, Marco R et al (show 1 more authors) and Winstanley, Craig ORCID: 0000-0002-2662-8053 (2015) Divergence of a strain of <i>Pseudomonas aeruginosa</i> during an outbreak of ovine mastitis. VETERINARY MICROBIOLOGY, 175 (1). pp. 105-113.

Blow, Frances, Vontas, John and Darby, Alistair C ORCID: 0000-0002-3786-6209 (2017) Draft Genome Sequence of <i>Chryseobacterium</i> Strain CBo1 Isolated from <i>Bactrocera oleae</i>. GENOME ANNOUNCEMENTS, 5 (18). e00177-e00117.

Blow, Frances, Vontas, John and Darby, Alistair C ORCID: 0000-0002-3786-6209 (2016) Draft Genome Sequence of Stenotrophomonas maltophilia SBo1 Isolated from Bactrocera oleae. Genome Announcements, 4 (5). e00905-e00916.

Blow, Frances, Gioti, Anastasia, Starns, David ORCID: 0000-0001-6583-9067, Ben-Yosef, Michael, Pasternak, Zohar, Jurkevitch, Edouard, Vontas, John and Darby, Alistair C ORCID: 0000-0002-3786-6209 (2016) Draft Genome Sequence of the <i>Bactrocera oleae</i> Symbiont "<i>Candidatus</i> Erwinia dacicola". GENOME ANNOUNCEMENTS, 4 (5). e00896-e00816.

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Hardwick, Kayla M, Ojwang, Awino Maureiq Edith, Stomeo, Francesca, Maina, Solomon, Bichang'a, Gladys, Calatayud, Paul-Andre, Filee, Jonathan, Djikeng, Appolinaire, Miller, Caitlin, Cepko, Leah et al (show 3 more authors) , Darby, Alistair C ORCID: 0000-0002-3786-6209, Le Ru, Bruno and Schaack, Sarah (2019) Draft Genome of <i>Busseola fusca</i>, the Maize Stalk Borer, a Major Crop Pest in Sub-Saharan Africa. GENOME BIOLOGY AND EVOLUTION, 11 (8). pp. 2203-2207.

Chaisiri, Kittipong, Gill, A Christina, Stekolnikov, Alexandr A, Hinjoy, Soawapak, McGarry, John W, Darby, Alistair C ORCID: 0000-0002-3786-6209, Morand, Serge and Makepeace, Benjamin ORCID: 0000-0002-6100-6727 (2019) Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand. Animal Microbiome, 1 (1). 18-.

Gill, Christina, van de Wijgert, Janneke HHM ORCID: 0000-0003-2728-4560, Blow, Frances and Darby, Alistair C ORCID: 0000-0002-3786-6209 (2016) Evaluation of Lysis Methods for the Extraction of Bacterial DNA for Analysis of the Vaginal Microbiota. PLOS ONE, 11 (9). e0163148-.

Blow, Frances, Gioti, Anastasia, Goodhead, Ian B, Kalyva, Maria, Kampouraki, Anastasia, Vontas, John and Darby, Alistair C ORCID: 0000-0002-3786-6209 (2020) Functional Genomics of a Symbiotic Community: Shared Traits in the Olive Fruit Fly Gut Microbiota. GENOME BIOLOGY AND EVOLUTION, 12 (2). pp. 3778-3791.

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Jackson, Ben, Boni, Maciej F, Bull, Matthew J, Colleran, Amy, Colquhoun, Rachel M, Darby, Alistair C ORCID: 0000-0002-3786-6209, Haldenby, Sam, Hill, Verity, Lucaci, Anita, McCrone, John T et al (show 14 more authors) , Nicholls, Samuel M, O’Toole, Áine, Pacchiarini, Nicole, Poplawski, Radoslaw, Scher, Emily, Todd, Flora ORCID: 0000-0001-5293-6394, Webster, Hermione J, Whitehead, Mark ORCID: 0000-0002-0452-1511, Wierzbicki, Claudia ORCID: 0000-0001-7266-2597, Loman, Nicholas J, Connor, Thomas R, Robertson, David L, Pybus, Oliver G and Rambaut, Andrew (2021) Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic. Cell, 184 (20). 5179-+.

Novakova, Eva, Hypsa, Vaclav, Nguyen, Petr, Husnik, Filip and Darby, Alistair C ORCID: 0000-0002-3786-6209 (2016) Genome sequence of <i>Candidatus</i> Arsenophonus lipopteni, the exclusive symbiont of a blood sucking fly <i>Lipoptena cervi</i> (Diptera: Hippoboscidae). STANDARDS IN GENOMIC SCIENCES, 11 (1). 72-.

Dong, Xiaofeng, Chaisiri, Kittipong, Xia, Dong, Armstrong, Stuart D ORCID: 0000-0002-3862-1801, Fang, Yongxiang ORCID: 0000-0002-4514-5292, Donnelly, Martin J, Kadowaki, Tatsuhiko ORCID: 0000-0002-4622-1218, McGarry, John W, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Makepeace, BL ORCID: 0000-0002-6100-6727 (2018) Genomes of trombidid mites reveal novel predicted allergens and laterally-transferred genes associated with secondary metabolism. GigaScience, 7 (12).

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Sollazzo, Germano, Gouvi, Georgia, Nikolouli, Katerina, Aumann, Roswitha A, Djambazian, Haig, Whitehead, Mark A ORCID: 0000-0002-0452-1511, Berube, Pierre, Chen, Shu-Huang, Tsiamis, George, Darby, Alistair C ORCID: 0000-0002-3786-6209 et al (show 3 more authors) , Ragoussis, Jiannis, Schetelig, Marc F and Bourtzis, Kostas (2023) Genomic and cytogenetic analysis of the Ceratitis capitata temperature-sensitive lethal region. G3-GENES GENOMES GENETICS, 13 (6). jkad074-.

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Davison, Helen R ORCID: 0000-0002-4302-5756, Pilgrim, Jack, Wybouw, Nicky, Parker, Joseph, Pirro, Stacy, Hunter-Barnett, Simon, Campbell, Paul M, Blow, Frances, Darby, Alistair C ORCID: 0000-0002-3786-6209, Hurst, Gregory DD ORCID: 0000-0002-7163-7784 et al (show 1 more authors) and Siozios, Stefanos ORCID: 0000-0002-1104-7061 (2022) Genomic diversity across the Rickettsia and 'Candidatus Megaira' genera and proposal of genus status for the Torix group. NATURE COMMUNICATIONS, 13 (1). 2630-.

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Nickbakhsh, Sema, Hughes, Joseph, Christofidis, Nicolaos, Griffiths, Emily, Shaaban, Sharif, Enright, Jessica, Smollett, Katherine, Nomikou, Kyriaki, Palmalux, Natasha, Tong, Lily et al (show 645 more authors) , Carmichael, Stephen, Sreenu, Vattipally B, Orton, Richard, Goldstein, Emily J, Tomb, Rachael M, Robson, Samuel C, Connor, Thomas R, Loman, Nicholas J, Golubchik, Tanya, Nunez, Rocio T Martinez, Bonsall, David, Rambaut, Andrew, Snell, Luke B, Livett, Rich, Ludden, Catherine, Corden, Sally, Nastouli, Eleni, Nebbia, Gaia, Johnston, Ian, Lythgoe, Katrina, Torok, M Estee, Goodfellow, Ian G, Prieto, Jacqui A, Saeed, Kordo, Jackson, David K, Houlihan, Catherine, Frampton, Dan, Hamilton, William L, Witney, Adam A, Bucca, Giselda, Pope, Cassie F, Moore, Catherine, Thomson, Emma C, Harrison, Ewan M, Smith, Colin P, Rogan, Fiona, Beckwith, Shaun M, Murray, Abigail, Singleton, Dawn, Eastick, Kirstine, Sheridan, Liz A, Randell, Paul, Jackson, Leigh M, Ariani, Cristina V, Gonçalves, Sónia, Fairley, Derek J, Loose, Matthew W, Watkins, Joanne, Moses, Samuel, Nicholls, Sam, Bull, Matthew, Amato, Roberto, Smith, Darren L, Aanensen, David M, Barrett, Jeffrey C, Aggarwal, Dinesh, Shepherd, James G, Curran, Martin D, Parmar, Surendra, Parker, Matthew D, Williams, Catryn, Glaysher, Sharon, Underwood, Anthony P, Bashton, Matthew, Pacchiarini, Nicole, Loveson, Katie F, Byott, Matthew, Carabelli, Alessandro M, Templeton, Kate E, de Silva, Thushan I, Wang, Dennis, Langford, Cordelia F, Sillitoe, John, Gunson, Rory N, Cottrell, Simon, O’Grady, Justin, Kwiatkowski, Dominic, Lillie, Patrick J, Cortes, Nicholas, Moore, Nathan, Thomas, Claire, Burns, Phillipa J, Mahungu, Tabitha W, Liggett, Steven, Beckett, Angela H, Holden, Matthew TG, Levett, Lisa J, Osman, Husam, Hassan-Ibrahim, Mohammed O, Simpson, David A, Chand, Mrera, Gupta, Ravi K, Darby, Alistair C ORCID: 0000-0002-3786-6209, Paterson, Steve ORCID: 0000-0002-1307-2981, Pybus, Oliver G, Volz, Erik M, de Angelis, Daniela, Robertson, David L, Page, Andrew J, Martincorena, Inigo, Aigrain, Louise, Bassett, Andrew R, Wong, Nick, Taha, Yusri, Erkiert, Michelle J, Chapman, Michael H Spencer, Dewar, Rebecca, McHugh, Martin P, Mookerjee, Siddharth, Aplin, Stephen, Harvey, Matthew, Sass, Thea, Umpleby, Helen, Wheeler, Helen, McKenna, James P, Warne, Ben, Taylor, Joshua F, Chaudhry, Yasmin, Izuagbe, Rhys, Jahun, Aminu S, Young, Gregory R, McMurray, Claire, McCann, Clare M, Nelson, Andrew, Elliott, Scott, Lowe, Hannah, Price, Anna, Crown, Matthew R, Rey, Sara, Roy, Sunando, Temperton, Ben, Shaaban, Sharif, Hesketh, Andrew R, Laing, Kenneth G, Monahan, Irene M, Heaney, Judith, Pelosi, Emanuela, Silviera, Siona, Wilson-Davies, Eleri, Fryer, Helen, Adams, Helen, du Plessis, Louis, Johnson, Rob, Harvey, William T, Hughes, Joseph, Orton, Richard J, Spurgin, Lewis G, Bourgeois, Yann, Ruis, Chris, O’Toole, Áine, Gourtovaia, Marina, Sanderson, Theo, Fraser, Christophe, Edgeworth, Jonathan, Breuer, Judith, Michell, Stephen L, Todd, John A, John, Michaela, Buck, David, Gajee, Kavitha, Kay, Gemma L, Peacock, Sharon J, Heyburn, David, Kitchman, Katie, McNally, Alan, Pritchard, David T, Dervisevic, Samir, Muir, Peter, Robinson, Esther, Vipond, Barry B, Ramadan, Newara A, Jeanes, Christopher, Weldon, Danni, Catalan, Jana, Jones, Neil, da Silva Filipe, Ana, Williams, Chris, Fuchs, Marc, Miskelly, Julia, Jeffries, Aaron R, Oliver, Karen, Park, Naomi R, Ash, Amy, Koshy, Cherian, Barrow, Magdalena, Buchan, Sarah L, Mantzouratou, Anna, Clark, Gemma, Holmes, Christopher W, Campbell, Sharon, Davis, Thomas, Tan, Ngee Keong, Brown, Julianne R, Harris, Kathryn A, Kidd, Stephen P, Grant, Paul R, Xu-McCrae, Li, Cox, Alison, Madona, Pinglawathee, Pond, Marcus, Randell, Paul A, Withell, Karen T, Williams, Cheryl, Graham, Clive, Denton-Smith, Rebecca, Swindells, Emma, Turnbull, Robyn, Sloan, Tim J, Bosworth, Andrew, Hutchings, Stephanie, Pymont, Hannah M, Casey, Anna, Ratcliffe, Liz, Jones, Christopher R, Knight, Bridget A, Haque, Tanzina, Hart, Jennifer, Irish-Tavares, Dianne, Witele, Eric, Mower, Craig, Watson, Louisa K, Collins, Jennifer, Eltringham, Gary, Crudgington, Dorian, Macklin, Ben, Iturriza-Gomara, Miren, Lucaci, Anita O, McClure, Patrick C, Carlile, Matthew, Holmes, Nadine, Moore, Christopher, Storey, Nathaniel, Rooke, Stefan, Yebra, Gonzalo, Craine, Noel, Perry, Malorie, Alikhan, Nabil-Fareed, Bridgett, Stephen, Cook, Kate F, Fearn, Christopher, Goudarzi, Salman, Lyons, Ronan A, Williams, Thomas, Haldenby, Sam T, Durham, Jillian, Leonard, Steven, Davies, Robert M, Batra, Rahul, Blane, Beth, Spyer, Moira J, Smith, Perminder, Yavus, Mehmet, Williams, Rachel J, Mahanama, Adhyana IK, Samaraweera, Buddhini, Girgis, Sophia T, Hansford, Samantha E, Green, Angie, Beaver, Charlotte, Bellis, Katherine L, Dorman, Matthew J, Kay, Sally, Prestwood, Liam, Rajatileka, Shavanthi, Quick, Joshua, Poplawski, Radoslaw, Reynolds, Nicola, Mack, Andrew, Morriss, Arthur, Whalley, Thomas, Patel, Bindi, Georgana, Iliana, Hosmillo, Myra, Pinckert, Malte L, Stockton, Joanne, Henderson, John H, Hollis, Amy, Stanley, William, Yew, Wen C, Myers, Richard, Thornton, Alicia, Adams, Alexander, Annett, Tara, Asad, Hibo, Birchley, Alec, Coombes, Jason, Evans, Johnathan M, Fina, Laia, Gatica-Wilcox, Bree, Gilbert, Lauren, Graham, Lee, Hey, Jessica, Hilvers, Ember, Jones, Sophie, Jones, Hannah, Kumziene-Summerhayes, Sara, McKerr, Caoimhe, Powell, Jessica, Pugh, Georgia, Taylor, Sarah, Trotter, Alexander J, Williams, Charlotte A, Kermack, Leanne M, Foulkes, Benjamin H, Gallis, Marta, Hornsby, Hailey R, Louka, Stavroula F, Pohare, Manoj, Wolverson, Paige, Zhang, Peijun, MacIntyre-Cockett, George, Trebes, Amy, Moll, Robin J, Ferguson, Lynne, Goldstein, Emily J, Maclean, Alasdair, Tomb, Rachael, Starinskij, Igor, Thomson, Laura, Southgate, Joel, Kraemer, Moritz UG, Raghwani, Jayna, Zarebski, Alex E, Boyd, Olivia, Geidelberg, Lily, Illingworth, Chris J, Jackson, Chris, Pascall, David, Vattipally, Sreenu, Freeman, Timothy M, Hsu, Sharon N, Lindsey, Benjamin B, James, Keith, Lewis, Kevin, Tonkin-Hill, Gerry, Tovar-Corona, Jaime M, Cox, MacGregor, Abudahab, Khalil, Menegazzo, Mirko, Taylor, Ben EW, Yeats, Corin A, Mukaddas, Afrida, Wright, Derek W, de Oliveira Martins, Leonardo, Colquhoun, Rachel, Hill, Verity, Jackson, Ben, McCrone, JT, Medd, Nathan, Scher, Emily, Keatley, Jon-Paul, Curran, Tanya, Morgan, Sian, Maxwell, Patrick, Smith, Ken, Eldirdiri, Sahar, Kenyon, Anita, Holmes, Alison H, Price, James R, Wyatt, Tim, Mather, Alison E, SkvortsovHartley, Timofey John A, Guest, Martyn, Kitchen, Christine, Merrick, Ian, Munn, Robert, Bertolusso, Beatrice, Lynch, Jessica, Vernet, Gabrielle, Kirk, Stuart, Wastnedge, Elizabeth, Stanley, Rachael, Idle, Giles, Bradley, Declan T, Poyner, Jennifer, Mori, Matilde, Jones, Owen, Wright, Victoria, Brooks, Ellena, Churcher, Carol M, Fragakis, Mireille, Galai, Katerina, Jermy, Andrew, Judges, Sarah, McManus, Georgina M, Smith, Kim S, Westwick, Elaine, Attwood, Stephen W, Bolt, Frances, Davies, Alisha, De Lacy, Elen, Downing, Fatima, Edwards, Sue, Meadows, Lizzie, Jeremiah, Sarah, Smith, Nikki, Foulser, Luke, Charalampous, Themoula, Patel, Amita, Berry, Louise, Boswell, Tim, Fleming, Vicki M, Howson-Wells, Hannah C, Joseph, Amelia, Khakh, Manjinder, Lister, Michelle M, Bird, Paul W, Fallon, Karlie, Helmer, Thomas, McMurray, Claire L, Odedra, Mina, Shaw, Jessica, Tang, Julian W, Willford, Nicholas J, Blakey, Victoria, Raviprakash, Veena, Sheriff, Nicola, Williams, Lesley-Anne, Feltwell, Theresa, Bedford, Luke, Cargill, James S, Hughes, Warwick, Moore, Jonathan, Stonehouse, Susanne, Atkinson, Laura, Lee, Jack CD, Shah, Divya, Alcolea-Medina, Adela, Ohemeng-Kumi, Natasha, Ramble, John, Sehmi, Jasveen, Williams, Rebecca, Chatterton, Wendy, Pusok, Monika, Everson, William, Castigador, Anibolina, Macnaughton, Emily, El Bouzidi, Kate, Lampejo, Temi, Sudhanva, Malur, Breen, Cassie, Sluga, Graciela, Ahmad, Shazaad SY, George, Ryan P, Machin, Nicholas W, Binns, Debbie, James, Victoria, Blacow, Rachel, Coupland, Lindsay, Smith, Louise, Barton, Edward, Padgett, Debra, Scott, Garren, Cross, Aidan, Mirfenderesky, Mariyam, Greenaway, Jane, Cole, Kevin, Clarke, Phillip, Duckworth, Nichola, Walsh, Sarah, Bicknell, Kelly, Impey, Robert, Wyllie, Sarah, Hopes, Richard, Bishop, Chloe, Chalker, Vicki, Harrison, Ian, Gifford, Laura, Molnar, Zoltan, Auckland, Cressida, Evans, Cariad, Johnson, Kate, Partridge, David G, Raza, Mohammad, Baker, Paul, Bonner, Stephen, Essex, Sarah, Murray, Leanne J, Lawton, Andrew I, Burton-Fanning, Shirelle, Payne, Brendan AI, Waugh, Sheila, Gomes, Andrea N, Kimuli, Maimuna, Murray, Darren R, Ashfield, Paula, Dobie, Donald, Ashford, Fiona, Best, Angus, Crawford, Liam, Cumley, Nicola, Mayhew, Megan, Megram, Oliver, Mirza, Jeremy, Moles-Garcia, Emma, Percival, Benita, Driscoll, Megan, Ensell, Leah, Lowe, Helen L, Maftei, Laurentiu, Mondani, Matteo, Chaloner, Nicola J, Cogger, Benjamin J, Easton, Lisa J, 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Frau, Alessandra ORCID: 0000-0002-6885-1042, Ijaz, Umer Z, Slater, Rachael, Jonkers, Daisy, Penders, John, Campbell, Barry J ORCID: 0000-0002-7407-012X, Kenny, John G, Hall, Neil, Lenzi, Luca ORCID: 0000-0003-2697-691X, Burkitt, Michael D et al (show 3 more authors) , Pierik, Marieke, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Probert, Christopher SJ ORCID: 0000-0003-4550-0239 (2021) Inter-kingdom relationships in Crohn's disease explored using a multi-omics approach. GUT MICROBES, 13 (1). 1930871-.

van de Wijgert, Janneke HHM ORCID: 0000-0003-2728-4560, Verwijs, Marijn C, Agaba, Stephen K, Bronowski, Christina ORCID: 0000-0001-8089-4021, Mwambarangwe, Lambert, Uwineza, Mireille, Lievens, Elke, Nivoliez, Adrien, Ravel, Jacques and Darby, Alistair C ORCID: 0000-0002-3786-6209 (2020) Intermittent Lactobacilli-containing Vaginal Probiotic or Metronidazole Use to Prevent Bacterial Vaginosis Recurrence: A Pilot Study Incorporating Microscopy and Sequencing. Scientific Reports, 10 (1). 3884-.

Gill, Alessandra Christina, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Makepeace, Benjamin L ORCID: 0000-0002-6100-6727 (2014) Iron Necessity: The Secret of <i>Wolbachia</i>'s Success? PLOS NEGLECTED TROPICAL DISEASES, 8 (10). e3224-.

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Khoo, Jing Jing ORCID: 0000-0003-1285-6052, Kurtti, Timothy J, Husin, Nurul Aini, Beliavskaia, Alexandra ORCID: 0000-0002-1194-5689, Lim, Fang Shiang ORCID: 0000-0002-2650-7518, Zulkifli, Mulya Mustika Sari, Al-Khafaji, Alaa M, Hartley, Catherine, Darby, Alistair C ORCID: 0000-0002-3786-6209, Hughes, Grant L ORCID: 0000-0002-7567-7185 et al (show 3 more authors) , AbuBakar, Sazaly, Makepeace, Benjamin L ORCID: 0000-0002-6100-6727 and Bell-Sakyi, Lesley ORCID: 0000-0002-7305-0477 (2020) Isolation and Propagation of Laboratory Strains and a Novel Flea-Derived Field Strain of <i>Wolbachia</i> in Tick Cell Lines. Microorganisms, 8 (7). E988-.

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Beliavskaia, Alexandra ORCID: 0000-0002-1194-5689, Tan, Kim-Kee, Sinha, Amit, Husin, Nurul Aini, Lim, Fang Shiang, Loong, Shih Keng, Bell-Sakyi, Lesley ORCID: 0000-0002-7305-0477, Carlow, Clotilde KS, AbuBakar, Sazaly, Darby, Alistair C ORCID: 0000-0002-3786-6209 et al (show 2 more authors) , Makepeace, Benjamin L ORCID: 0000-0002-6100-6727 and Khoo, Jing Jing ORCID: 0000-0003-1285-6052 (2023) Metagenomics of culture isolates and insect tissue illuminate the evolution of <i>Wolbachia</i>, <i>Rickettsia</i> and <i>Bartonella</i> symbionts in <i>Ctenocephalides</i> spp. fleas. Microbial genomics, 9 (7).

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Abbas, Ali Hadi ORCID: 0000-0003-2694-730X, Pereira, Sara Silva, D'Archivio, Simon, Wickstead, Bill, Morrison, Liam J, Hall, Neil, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Jackson, Andrew P ORCID: 0000-0002-5704-8596 (2018) The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense. Genome Biology and Evolution, 10 (9). pp. 2458-2473.

Hall, Rebecca J, Flanagan, Lindsey A, Bottery, Michael J, Springthorpe, Vicki, Thorpe, Stephen, Darby, Alistair C ORCID: 0000-0002-3786-6209, Wood, A Jamie and Thomas, Gavin H (2019) A Tale of Three Species: Adaptation of Sodalis glossinidius to Tsetse Biology, Wigglesworthia Metabolism, and Host Diet. mBio, 10 (1). e02106-e02118.

Pottenger, Sian ORCID: 0000-0002-5700-9693, Watts, Amyleigh, Wedley, Amy ORCID: 0000-0002-4164-545X, Jopson, Sue, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Wigley, Paul (2023) Timing and delivery route effects of cecal microbiome transplants on <i>Salmonella </i>Typhimurium infections in chickens: potential for in-hatchery delivery of microbial interventions. ANIMAL MICROBIOME, 5 (1). 11-.

Liu, Qiushi, Lei, Jing, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Kadowaki, Tatsuhiko ORCID: 0000-0002-4622-1218 (2020) Trypanosomatid parasite dynamically changes the transcriptome during infection and modifies honey bee physiology. COMMUNICATIONS BIOLOGY, 3 (1). 51-.

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Ward, Christopher M, Aumann, Roswitha A, Whitehead, Mark A ORCID: 0000-0002-0452-1511, Nikolouli, Katerina, Leveque, Gary, Gouvi, Georgia, Fung, Elisabeth, Reiling, Sarah J, Djambazian, Haig, Hughes, Margaret A ORCID: 0000-0001-7251-6821 et al (show 14 more authors) , Whiteford, Sam, Caceres-Barrios, Carlos, Nguyen, Thu NM, Choo, Amanda, Crisp, Peter, Sim, Sheina B, Geib, Scott M, Marec, Frantisek, Haecker, Irina, Ragoussis, Jiannis, Darby, Alistair C ORCID: 0000-0002-3786-6209, Bourtzis, Kostas, Baxter, Simon W and Schetelig, Marc F (2021) White pupae phenotype of tephritids is caused by parallel mutations of a MFS transporter. NATURE COMMUNICATIONS, 12 (1). 491-.

Siozios, Stefanos ORCID: 0000-0002-1104-7061, Pilgrim, Jack ORCID: 0000-0002-2941-1482, Darby, Alistair C ORCID: 0000-0002-3786-6209, Baylis, Matthew ORCID: 0000-0003-0335-187X and Hurst, Gregory DD ORCID: 0000-0002-7163-7784 (2019) The draft genome of strain <i>c</i>Cpun from biting midges confirms insect <i>Cardinium</i> are not a monophyletic group and reveals a novel gene family expansion in a symbiont. PEERJ, 7 (2). e6448-.

Siozios, Stefanos, Pilgrim, Jack, Darby, Alistair C ORCID: 0000-0002-3786-6209, Baylis, Matthew ORCID: 0000-0003-0335-187X and Hurst, Gregory DD ORCID: 0000-0002-7163-7784 (2019) The draft genome of strain cCpun from biting midges establishes Cardinium as a paraphyletic group, and reveals a novel gene family expansion in a symbiont. PeerJ.

Siozios, Stefanos, Pilgrim, Jack, Darby, Alistair C ORCID: 0000-0002-3786-6209, Baylis, Matthew ORCID: 0000-0003-0335-187X and Hurst, Gregory DD ORCID: 0000-0002-7163-7784 (2019) The draft genome of strain cCpun from biting midges establishes Cardinium as a paraphyletic group, and reveals a novel gene family expansion in a symbiont. PeerJ, 6. e27242v1-.

Lucas, Eric R, Darby, Alistair C ORCID: 0000-0002-3786-6209, Torr, Stephen J and Donnelly, Martin J (2021) A gene expression panel for estimating age in males and females of the sleeping sickness vector <i>Glossina morsitans</i>. PLOS NEGLECTED TROPICAL DISEASES, 15 (9). e0009797-.

Yavari, Christine A, Ramirez, Ana S, Nicholas, Robin AJ, Radford, Alan D ORCID: 0000-0002-4590-1334, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Bradbury, Janet M ORCID: 0000-0003-2416-220X (2017) <i>Mycoplasma tullyi</i> sp nov., isolated from penguins of the genus <i>Spheniscus</i>. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 67 (10). pp. 3692-3698.

Turner, Joe ORCID: 0000-0003-3138-1427, Krishna, Ritesh, van’t Hof, Arjen E, Sutton, Elizabeth R, Matzen, Kelly and Darby, Alistair C ORCID: 0000-0002-3786-6209 (2018) The sequence of a male-specific genome region containing the sex determination switch in Aedes aegypti. Parasites &amp; Vectors, 11 (1).