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Aljabr, Waleed ORCID: 0000-0002-9385-2776, Alruwaili, Muhannad, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alrezaihi, Abdulrahman, Harrison, Abbie Jasmine, Ryan, Yan ORCID: 0000-0002-4708-5350, Bentley, Eleanor, Jones, Benjamin, Alhatlani, Bader Y, AlShahrani, Dayel et al (show 19 more authors) , Mahmood, Zana ORCID: 0000-0001-6000-6648, Rickett, Natasha Y, Alosaimi, Bandar, Naeem, Asif, Alamri, Saad, Alsran, Hadel, Hamed, Maaweya E, Dong, Xiaofeng, Assiri, Abdullah M, Alrasheed, Abdullah R, Hamza, Muaawia, Carroll, Miles W, Gemmell, Matthew, Darby, Alistair ORCID: 0000-0002-3786-6209, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Stewart, James P ORCID: 0000-0002-8928-2037, Matthews, David A, Davidson, Andrew D and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2021) Amplicon and Metagenomic Analysis of Middle East Respiratory Syndrome (MERS) Coronavirus and the Microbiome in Patients with Severe MERS. mSphere, 6 (4). e0021921-e0021921.

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Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Prince, Tessa ORCID: 0000-0002-8796-2629, Randle, Nadine ORCID: 0000-0002-3775-9585, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Salguero, Francisco J, Tree, Julia, Vamos, Ecaterina, Nelson, Charlotte et al (show 11 more authors) , Clark, Jordan, Ryan, Yan, Stewart, James P ORCID: 0000-0002-8928-2037, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Baillie, J Kenneth, Openshaw, Peter JM, Turtle, Lance ORCID: 0000-0002-0778-1693, Matthews, David A, Carroll, Miles W, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2022) Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers. GIGASCIENCE, 11. giac045-.

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Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Rzeszutek, Aleksandra M, Pilgrim, Jack, Bullock, Katie, Saunders, Geoffrey, Northey, Josh, Dong, Xiaofeng, Ryan, Yan ORCID: 0000-0002-4708-5350 et al (show 24 more authors) , Reynolds, Helen ORCID: 0000-0001-7443-4520, Tetlow, Michelle, Walker, Lauren E, FitzGerald, Richard, Hale, Colin, Lyon, Rebecca, Woods, Christie, Ahmad, Shazaad, Hadjiyiannakis, Dennis, Periselneris, Jimstan, Knox, Emma, Middleton, Calley, Lavelle-Langham, Lara, Shaw, Victoria ORCID: 0000-0002-0429-0186, Greenhalf, William, Edwards, Thomas, Lalloo, David G ORCID: 0000-0001-7680-2200, Edwards, Christopher J, Darby, Alistair C ORCID: 0000-0002-3786-6209, Carroll, Miles W, Griffiths, Gareth, Khoo, Saye H ORCID: 0000-0002-2769-0967, Hiscox, Julian A ORCID: 0000-0002-6582-0275 and Fletcher, Thomas (2022) Characterisation of SARS-CoV-2 genomic variation in response to molnupiravir treatment in the AGILE Phase IIa clinical trial. NATURE COMMUNICATIONS, 13 (1). 7284-.

Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Turnell, Andrew S, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Leppard, Keith N and Matthews, David A (2020) Deep splicing plasticity of the human adenovirus type 5 transcriptome drives virus evolution. COMMUNICATIONS BIOLOGY, 3 (1). 124-.

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Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Milligan, Rachel, Hall, Sophie, Gao, Tianyi, Murphy, Eleanor, Li, Jack, Shawli, Ghada T, Hiscox, Julian ORCID: 0000-0002-6582-0275, Zhuang, Xiaodong, McKeating, Jane A et al (show 2 more authors) , Fearns, Rachel and Matthews, David A (2022) Direct RNA sequencing of respiratory syncytial virus infected human cells generates a detailed overview of RSV polycistronic mRNA and transcript abundance. PloS one, 17 (11). e0276697-e0276697.

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Thi Hue Kien, Duong ORCID: 0000-0002-1573-5697, Edenborough, Kathryn ORCID: 0000-0002-9598-5740, da Silva Goncalves, Daniela, Thuy Vi, Tran, Casagrande, Etiene, Thi Le Duyen, Huynh, Thi Long, Vo, Thi Dui, Le, Thi Tuyet Nhu, Vu, Thi Giang, Nguyen et al (show 11 more authors) , Thi Xuan Trang, Huynh, Lee, Elvina, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Thi Thuy Van, Huynh, Minh Nguyet, Nguyen ORCID: 0000-0002-5960-7849, Thanh Phong, Nguyen, Van Vinh Chau, Nguyen, Wills, Bridget, Yacoub, Sophie ORCID: 0000-0002-2910-7819, Flores, Heather and Simmons, Cameron (2023) Genome evolution of dengue virus serotype 1 under selection by <i>Wolbachia pipientis</i> in <i>Aedes aegypti</i> mosquitoes. Virus evolution, 9 (1). vead016-.

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Khoo, Saye H ORCID: 0000-0002-2769-0967, FitzGerald, Richard, Saunders, Geoffrey, Middleton, Calley, Ahmad, Shazaad, Edwards, Christopher J, Hadjiyiannakis, Dennis, Walker, Lauren ORCID: 0000-0002-3827-4387, Lyon, Rebecca, Shaw, Victoria ORCID: 0000-0002-0429-0186 et al (show 80 more authors) , Mozgunov, Pavel, Periselneris, Jimstan, Woods, Christie, Bullock, Katie ORCID: 0000-0002-5758-0179, Hale, Colin, Reynolds, Helen ORCID: 0000-0001-7443-4520, Downs, Nichola, Ewings, Sean, Buadi, Amanda, Cameron, David, Edwards, Thomas, Knox, Emma, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Greenhalf, William ORCID: 0000-0002-1865-3195, Chiong, Justin ORCID: 0000-0001-8063-6399, Lavelle-Langham, Lara, Jacobs, Michael, Northey, Josh, Painter, Wendy, Holman, Wayne, Lalloo, David G ORCID: 0000-0001-7680-2200, Tetlow, Michelle, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Jaki, Thomas, Fletcher, Thomas, Griffiths, Gareth, Paton, Nicholas, Hayden, Fred, Darbyshire, Janet, Lucas, Amy, Lorch, Ulrika, Freedman, Andrew, Knight, Richard, Julious, Stevan, Byrne, Rachel, Cubas Atienzar, Ana, Jones, Jayne, Williams, Chris, Song, Anna, Dixon, Jan, Alexandersson, Anja, Hatchard, Parys, Tilt, Emma, Titman, Andrew, Doce Carracedo, Ale ORCID: 0009-0000-1502-0184, Chandran Gorner, Vatsi, Davies, Andrea, Woodhouse, Louis, Carlucci, Nicola, Okenyi, Emmanuel, Bula, Marcin, Dodd, Kate, Gibney, Jennifer, Dry, Lesley, Rashid Gardner, Zalina, Sammour, Amin, Cole, Christine, Rowland, Tim, Tsakiroglu, Maria, Yip, Vincent, Osanlou, Rostam, Stewart, Anna, Parker, Ben, Turgut, Tolga, Ahmed, Afshan, Starkey, Kay, Subin, Sujamole, Stockdale, Jennifer, Herring, Lisa, Baker, Jonathon, Oliver, Abigail, Pacurar, Mihaela, Owens, Dan, Munro, Alistair, Babbage, Gavin, Faust, Saul, Harvey, Matthew, Pratt, Danny, Nagra, Deepak and Vyas, Aashish (2022) Molnupiravir versus placebo in unvaccinated and vaccinated patients with early SARS-CoV-2 infection in the UK (AGILE CST-2): a randomised, placebo-controlled, double-blind, phase 2 trial. The Lancet Infectious Diseases, 23 (2). pp. 183-195.

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Zhou, Jie, Peacock, Thomas P, Brown, Jonathan C, Goldhill, Daniel H, Elrefaey, Ahmed ME, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Cowton, Vanessa M, De Lorenzo, Giuditta, Furnon, Wilhelm, Harvey, William T et al (show 19 more authors) , Kugathasan, Ruthiran, Frise, Rebecca, Baillon, Laury, Lassaunière, Ria, Thakur, Nazia, Gallo, Giulia, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Dong, Xiaofeng, Randle, Nadine P ORCID: 0000-0002-3775-9585, Sweeney, Fiachra, Glynn, Martha C, Quantrill, Jessica L, McKay, Paul F, Patel, Arvind H, Palmarini, Massimo, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Bailey, Dalan and Barclay, Wendy S (2022) Mutations that adapt SARS-CoV-2 to mink or ferret do not increase fitness in the human airway. Cell Reports, 38 (6). p. 110344.

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Zhou, Jie, Peacock, Thomas, Brown, Jonathan ORCID: 0000-0001-6849-3962, Goldhill, Daniel, Elrefaey, Ahmed, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Cowton, Vanessa, De Lorenzo, Giuditta, Furnon, Wilhelm, Harvey, William et al (show 19 more authors) , Kugathasan, Ruthiran, Frise, Rebecca, Baillon, Laury, Lassauniere, Ria, Thakur, Nazia, Gallo, Giulia, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Dong, Xiaofeng, Randle, Nadine ORCID: 0000-0002-3775-9585, Sweeney, Fiachra, Glynn, Martha, Quantrill, Jessica, McKay, Paul, Patel, Arvind, Palmarini, Massimo, Hiscox, Julian ORCID: 0000-0002-6582-0275, Bailey, Dalan and Barclay, Wendy ORCID: 0000-0002-3948-0895 (2021) Mutations that adapt SARS-CoV-2 to mustelid hosts do not increase fitness in the human airway. Cell Rep, 38 (6). 110344-.

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Goldswain, Hannah, Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Shawli, Ghada T, Prince, Tessa ORCID: 0000-0002-8796-2629, Williamson, Maia Kavanagh, Raghwani, Jayna, Randle, Nadine ORCID: 0000-0002-3775-9585, Jones, Benjamin et al (show 20 more authors) , Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Salguero, Francisco J, Tree, Julia A, Hall, Yper, Hartley, Catherine, Erdmann, Maximilian, Bazire, James, Jearanaiwitayakul, Tuksin, Semple, Malcolm G, Openshaw, Peter JM, Baillie, J Kenneth, ISARIC4C Investigators, , Emmett, Stevan R, Digard, Paul, Matthews, David A, Turtle, Lance, Darby, Alistair C ORCID: 0000-0002-3786-6209, Davidson, Andrew D, Carroll, Miles W and Hiscox, Julian A (2023) The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection. Genome biology, 24 (1). p. 47.

Sanderson, Theo ORCID: 0000-0003-4177-2851, Hisner, Ryan, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Hartman, Hassan, Løchen, Alessandra, Peacock, Thomas P ORCID: 0000-0001-7077-2928 and Ruis, Christopher ORCID: 0000-0003-0977-5534 (2023) A molnupiravir-associated mutational signature in global SARS-CoV-2 genomes. Nature, 623 (7987). pp. 594-600.