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Iroh Tam, Pui-Ying, Chirombo, James, Henrion, Marc, Newberry, Laura, Mambule, Ivan, Everett, Dean, Mwansambo, Charles, Cunliffe, Nigel ORCID: 0000-0002-5449-4988, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S et al (show 1 more authors) and Bar-Zeev, Naor (2022) Clinical pneumonia in the hospitalised child in Malawi in the post-pneumococcal conjugate vaccine era: a prospective hospital-based observational study. BMJ Open, 12 (2). e050188-e050188.

Nyirenda, Deborah ORCID: 0000-0002-5867-4687, Gooding, Kate, Lora, Wezzie, Kumwenda, Moses, McMorrow, Meredith, Everett, Dean and Desmond, Nicola ORCID: 0000-0002-2874-8569 (2018) Complexities and dilemmas in community consultation on the design of a research project logo in Malawi. PLOS ONE, 13 (10). e0205737-.

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Feasey, Nicholas A, Cain, Amy K, Msefula, Chisomo L, Pickard, Derek, Alaerts, Maaike, Aslett, Martin, Everett, Dean, Allain, Theresa J, Dougan, Gordon, Gordon, Melita ORCID: 0000-0002-0629-0884 et al (show 2 more authors) , Heyderman, Robert S and Kingsley, Robert A (2014) Drug resistance in Salmonella enterica ser. Typhimurium bloodstream infection, Malawi. Emerging Infectious Diseases, 20 (11). pp. 1957-1959.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Heinsbroek, Ellen, Gladstone, Rebecca, Tafatatha, Terence, Alaerts, Maaike, Peno, Chikondi, Cornick, Jennifer, Musicha, Patrick, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng’ona, Arox et al (show 8 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Mcgee, Lesley, Hanage, William, Breiman, Robert, Heyderman, Robert, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean and Bentley, Stephen (2020) Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data. Clinical Infectious Diseases, 70 (7). pp. 1294-1303.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Heinsbroek, Ellen, Gladstone, Rebecca, Tafatatha, Terence, Alaerts, Maaike, Peno, Chikondi, Cornick, Jennifer, Musicha, Patrick, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng’ona, Arox et al (show 8 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Mcgee, Lesley, Hanage, William, Breiman, Robert, Heyderman, Robert, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean and Bentley, Stephen (2020) Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data. Clinical Infectious Diseases, 70 (7). 1294 - 1303.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Heinsbroek, Ellen, Gladstone, Rebecca, Tafatatha, Terence, Alaerts, Maaike, Peno, Chikondi, Cornick, Jennifer, Musicha, Patrick, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng’ona, Arox et al (show 8 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Mcgee, Lesley, Hanage, William, Breiman, Robert, Heyderman, Robert, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean and Bentley, Stephen (2018) Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data. BioRxiv.

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Iroh Tam, Pui-Ying, Musicha, Patrick, Kawaza, Kondwani, Cornick, Jenifer, Denis, Brigitte, Freyne, Bridget ORCID: 0000-0002-9542-1582, Everett, Dean, Dube, Queen, French, Neil ORCID: 0000-0003-4814-8293, Feasey, Nicholas et al (show 1 more authors) and Heyderman, Robert (2019) Emerging Resistance to Empiric Antimicrobial Regimens for Pediatric Bloodstream Infections in Malawi (1998–2017). Clinical Infectious Diseases, 69 (1). pp. 61-68.

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Ho, Antonia ORCID: 0000-0003-1465-3785, Mallewa, Jane, Peterson, Ingrid, SanJoaquin, Miguel, Garg, Shikha, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Menyere, Mavis, Alaerts, Maaike, Mapurisa, Gugulethu, Chilombe, Moses et al (show 8 more authors) , Nyirenda, Mulinda, Lalloo, David G ORCID: 0000-0001-7680-2200, Rothe, Camilla, Widdowson, Marc-Alain, McMorrow, Meredith, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean and Heyderman, Robert S (2018) Epidemiology of Severe Acute Respiratory Illness and Risk Factors for Influenza Infection and Clinical Severity among Adults in Malawi, 2011-2013. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 99 (3). pp. 772-779.

Stockdale, Alexander J ORCID: 0000-0002-5828-3328, Mitambo, Collins, Everett, Dean, Geretti, Anna Maria ORCID: 0000-0002-3670-6588 and Gordon, Melita A ORCID: 0000-0002-0629-0884 (2018) Epidemiology of hepatitis B, C and D in Malawi: systematic review. BMC INFECTIOUS DISEASES, 18 (1). 516-.

Stockdale, Alexander J ORCID: 0000-0002-5828-3328, Mitambo, Collins, Everett, Dean, Geretti, Anna Maria and Gordon, Melita A (2018) Epidemiology of hepatitis B, C and D in Malawi: systematic review. BMC INFECTIOUS DISEASES, 18.

Baral, Ranju, Mambule, Ivan, Vodicka, Elisabeth, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean, Pecenka, Clint and Bar-Zeev, Naor (2020) Estimating the Economic Impact of Respiratory Syncytial Virus and Other Acute Respiratory Infections Among Infants Receiving Care at a Referral Hospital in Malawi. JOURNAL OF THE PEDIATRIC INFECTIOUS DISEASES SOCIETY, 9 (6). pp. 738-745.

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Aston, Stephen J ORCID: 0000-0002-0701-8364, Ho, Antonia ORCID: 0000-0003-1465-3785, Jary, Hannah, Huwa, Jacqueline, Mitchell, Tamara, Ibitoye, Sarah, Greenwood, Simon, Joekes, Elizabeth, Daire, Arthur, Mallewa, Jane et al (show 6 more authors) , Everett, Dean, Nyirenda, Mulinda, Faragher, Brian, Mwandumba, Henry C, Heyderman, Robert S and Gordon, Stephen B (2019) Etiology and Risk Factors for Mortality in an Adult Community-acquired Pneumonia Cohort in Malawi. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 200 (3). pp. 359-369.

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Swarthout, Todd D, Gori, Andrea, Bar-Zeev, Naor, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Mwalukomo, Thandie S, Bonomali, Farouck, Nyirenda, Roseline, Brown, Comfort, Msefula, Jacquline, Everett, Dean et al (show 5 more authors) , Mwansambo, Charles, Gould, Katherine, Hinds, Jason, Heyderman, Robert S and French, Neil ORCID: 0000-0003-4814-8293 (2021) Evaluation of Pneumococcal Serotyping of Nasopharyngeal-Carriage Isolates by Latex Agglutination, Whole-Genome Sequencing (PneumoCaT), and DNA Microarray in a High-Pneumococcal-Carriage-Prevalence Population in Malawi. JOURNAL OF CLINICAL MICROBIOLOGY, 59 (1). e02103-e02120.

Hanachi, Mariem, Kiran, Anmol ORCID: 0000-0003-2680-2303, Cornick, Jennifer, Harigua-Souiai, Emna, Everett, Dean, Benkahla, Alia and Souiai, Oussama (2020) Genomic Characteristics of Invasive Streptococcus pneumoniae Serotype 1 in New Caledonia Prior to the Introduction of PCV13. Bioinformatics and Biology Insights, 14. p. 117793222096210.

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Azarian, Taj, Mitchell, Patrick K, Georgieva, Maria, Thompson, Claudette M, Ghouila, Amel, Pollard, Andrew J, von Gottberg, Anne, du Plessis, Mignon, Antonio, Martin, Kwambana-Adams, Brenda A et al (show 17 more authors) , Clarke, Stuart C, Everett, Dean, Cornick, Jennifer, Sadowy, Ewa, Hryniewicz, Waleria, Skoczynska, Anna, Moisi, Jennifer C, McGee, Lesley, Beail, Bernard, Metcalf, Benjamin J, Breiman, Robert F, Ho, PL, Reid, Raymond, O'Brien, Katherine L, Gladstone, Rebecca A, Bentley, Stephen D and Hanage, William P (2018) Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. PLOS PATHOGENS, 14 (11). e1007438-.

Stockdale, Alexander ORCID: 0000-0002-5828-3328 (2020) Hepatitis B and C in Malawi: Epidemiology, Disease Burden and Opportunities for a Public Health Treatment Programme. Doctor of Philosophy thesis, University of Liverpool.

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Swarthout, Todd D, Fronterre, Claudio, Lourenco, Jose, Obolski, Uri, Gori, Andrea, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Everett, Dean, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Mwalukomo, Thandie S, Mataya, Andrew A et al (show 6 more authors) , Mwansambo, Charles, Banda, Marjory, Gupta, Sunetra, Diggle, Peter, French, Neil ORCID: 0000-0003-4814-8293 and Heyderman, Robert S (2020) High residual carriage of vaccine-serotype Streptococcus pneumoniae after introduction of pneumococcal conjugate vaccine in Malawi. NATURE COMMUNICATIONS, 11 (1). 2222-.

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Ho, Antonia ORCID: 0000-0003-1465-3785, Mapurisa, Gugulethu, Madanitsa, Mwayiwawo, Kalilani-Phiri, Linda, Kamiza, Steve, Makanani, B, Ter Kuile, Feiko O, Buys, Amelia, Treurnicht, Florette, Everett, Dean et al (show 4 more authors) , Mwapasa, Victor, Widdowson, Marc-Alain, McMorrow, Meredith and Heyderman, Robert S (2019) Impact of Maternal HIV Infection and Placental Malaria on the Transplacental Transfer of Influenza Antibodies in Mother-Infant Pairs in Malawi, 2013-2014. OPEN FORUM INFECTIOUS DISEASES, 6 (10). ofz383-.

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Nyazika, Tinashe K, Law, Alice, Swarthout, Todd D, Sibale, Lusako, ter Braake, Danielle, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S, Everett, Dean, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Jambo, Kondwani C ORCID: 0000-0002-3195-2210 et al (show 1 more authors) and Neill, Daniel R ORCID: 0000-0002-7911-8153 (2020) Influenza-like illness is associated with high pneumococcal carriage density in Malawian children. JOURNAL OF INFECTION, 81 (4). pp. 549-556.

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Bennett, Aisleen, Pollock, Louisa, Jere, Khuzwayo C ORCID: 0000-0003-3376-8529, Pitzer, Virginia E, Lopman, Benjamin, Parashar, Umesh, Everett, Dean, Heyderman, Robert S, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Cunliffe, Nigel A ORCID: 0000-0002-5449-4988 et al (show 1 more authors) and Iturriza-Gomara, Miren ORCID: 0000-0001-5816-6423 (2019) Infrequent Transmission of Monovalent Human Rotavirus Vaccine Virus to Household Contacts of Vaccinated Infants in Malawi. The Journal of Infectious Diseases, 219 (11). pp. 1730-1734.

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Feasey, Nicholas A, Everett, Dean, Faragher, E Brian, Roca-Feltrer, Arantxa, Kang'ombe, Arthur, Denis, Brigitte, Kerac, Marko, Molyneux, Elizabeth, Molyneux, Malcolm, Jahn, Andreas et al (show 2 more authors) , Gordon, Melita A ORCID: 0000-0002-0629-0884 and Heyderman, Robert S (2015) Modelling the Contributions of Malaria, HIV, Malnutrition and Rainfall to the Decline in Paediatric Invasive Non-typhoidal <i>Salmonella</i> Disease in Malawi. PLOS NEGLECTED TROPICAL DISEASES, 9 (7). e0003979-.

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Dunning, Jake W, Merson, Laura, Rohde, Gernot GU, Gao, Zhancheng, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Dat, Tran, Gordon, Anthony, Liaro, Piero L, Khoo, Saye H ORCID: 0000-0002-2769-0967, Bruzzone, Roberto et al (show 24 more authors) , Horby, Peter, Cobb, J Perren, Longuere, Kajsa-Stina, Kellam, Paul, Nichol, Alistair, Brett, Stephen, Everett, Dean, Walsh, Timothy S, Tran-Tinh, Hien, Yu, Hongjie, Zambon, Maria, Ruiz-Palacios, Guillermo, Lang, Trudie, Akhvlediani, Tamuna, Hayden, Frederick G, Marshall, John, Webb, Steve, Angus, Derek C, Shindo, Nahoko, van der Werf, Sylvie, Openshaw, Peter JM, Farrar, Jeremy, Carson, Gail and Baillie, J Kenneth (2014) Open source clinical science for emerging infections. LANCET INFECTIOUS DISEASES, 14 (1). pp. 8-9.

Kalata, Newton L, Nyazika, Tinashe K, Swarthout, Todd D, Everett, Dean, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S, Gordon, Stephen B and Jambo, Kondwani C ORCID: 0000-0002-3195-2210 (2019) Pneumococcal pneumonia and carriage in Africa before and after introduction of pneumococcal conjugate vaccines, 2000-2019: protocol for systematic review. BMJ open, 9 (11). e030981-e030981.

Chaguza, Chrispin (2018) Population genomics of pneumococcal strains from a high disease African setting. Doctor of Philosophy thesis, University of Liverpool.

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van Tonder, Andries J, Gladstone, Rebecca A, Lo, Stephanie W, Nahm, Moon H, du Plessis, Mignon, Cornick, Jennifer, Kwambana-Adams, Brenda, Madhi, Shabir A, Hawkins, Paulina A, Benisty, Rachel et al (show 8 more authors) , Dagan, Ron, Everett, Dean, Antonio, Martin, Klugman, Keith P, von Gottbere, Anne, Breiman, Robert F, McGee, Lesley and Bentley, Stephen D (2019) Putative novel <i>cps</i> loci in a large global collection of pneumococci. MICROBIAL GENOMICS, 5 (7).

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Swarthout, Todd, Fronterre, Claudio, Lourenco, Jose, Obolski, Uri, Gori, Andrea, Bar zeev, Naor, Everett, Dean, Kamngoma, Arox, Mwalukomo, Thandie, Mataya, Andrew et al (show 6 more authors) , Mwansambo, Charles, Banda, Marjory, Gupta, Sunetra, Diggle, Peter, French, Neil ORCID: 0000-0003-4814-8293 and Heyderman, Robert (2020) Residual carriage of vaccine-serotype Streptococcus pneumoniae after introduction of a pneumococcal conjugate vaccine in Malawi. Nature Communications.

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Peterson, Ingrid, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kennedy, Neil, Ho, Antonia ORCID: 0000-0003-1465-3785, Newberry, Laura, SanJoaquin, Miguel A, Menyere, Mavis, Alaerts, Maaike, Mapurisa, Gugulethu, Chilombe, Moses et al (show 11 more authors) , Mambule, Ivan, Lalloo, David G ORCID: 0000-0001-7680-2200, Anderson, Suzanne T, Katangwe, Thembi, Cunliffe, Nigel ORCID: 0000-0002-5449-4988, Nagelkerke, Nico, McMorrow, Meredith, Widdowson, Marc-Allain, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean and Heyderman, Robert S (2016) Respiratory Virus-Associated Severe Acute Respiratory Illness and Viral Clustering in Malawian Children in a Setting With a High Prevalence of HIV Infection, Malaria, and Malnutrition. JOURNAL OF INFECTIOUS DISEASES, 214 (11). pp. 1700-1711.

Cornick, Jen Roadmap to resistance: antimicrobial resistance in Malawian pneumococci. Doctor of Philosophy thesis, Institute of Infection and Global Health.

Clarke, Jenny, Baltazar, Murielle ORCID: 0000-0002-1972-2308, Alsahag, Mansoor, Panagiotou, Stavros, Pouget, Marion, Paxton, William A ORCID: 0000-0001-5200-0801, Pollakis, Georgios ORCID: 0000-0002-9659-5461, Everett, Dean, French, Neil ORCID: 0000-0003-4814-8293 and Kadioglu, Aras ORCID: 0000-0003-1137-6321 (2021) Streptolysin O concentration and activity is central to in vivo phenotype and disease outcome in Group A Streptococcus infection. SCIENTIFIC REPORTS, 11 (1). 19011-.

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Mich, Vann, Pho, Yaty, Bory, Sotharith, Vann, Mich, Teav, Bunlor, Som, Leakhann, Jarrvisalo, Mikko J, Pulkkinen, Anni, Kuitunen, Anne, Ala-kokko, Tero et al (show 128 more authors) , Melto, Sari, Daix, Thomas, Philippart, Francois, Antoine, Marchalot, Tiercelet, Kelly, Bruel, Cedric, Nicholas, Sedillot, Siami, Shidasp, Fabienne, Taimon, Bruyere, Raomi, Forceville, Xavier, Erickson, Simon, Campbell, Lewis, Sonawane, Ravikiran, Santamaria, John, Kol, Mark, Awasthi, Shally, Powis, Jeff, Hall, Richard, McCarthy, Anne E, Jouvet, Philippe, Opaysky, Mary Anne, Gilfoyle, Elaine, Farshait, Nataly, Martin, Dori-Ann, Griesdale, Donald, Katz, Kevin, Ruberto, Aaron J, Carrier, Francois Martin, Lamontagne, Francois, Muscedere, John, Rishu, Asgar, Sin, Wai Ching, Ngai, Wallace Chun Wai, Young, Paul, Forrest, Annette, Kazemi, Alex, Henderson, Seton, Browne, Troy, Ganeshalingham, Anusha, McConnochie, Rachael, Cho, Jae Hwa, Park, Tai Sun, Sim, Yun Su, Chang, Youjin, Lee, Heung Bum, Park, Seung Yong, Chan, Wai Ming, Lee, Won-Yeon, Wallace, David J, Angus, Derek C, Charles, Anthony G, van Doom, H Rogier, Nguyen, Van Kinh, Nguyen, Vu Trung, Prin, Meghan, Twagirumugabe, Theogene, Umuhire, Olivier Felix, Sylvain, Habarurema, Al Qasim, Eman, Heraud, Jean-Michel, Raberahona, Mihaja, Rabarison, Joelinotahiana Hasina, Patrigeon, Santiago Perez, Ramirez-Venegas, Alejandra, Melendez, Javier Araujo, Guerrero, M Lourdes, Mambule, Ivan, Ochieng, Otieno George, Nadjm, Behzad, Li, Iris Wai Sum, Choi, Won-Il, Florence, Komurian-Pradel, Arabi, Yaseen M, West, T Eoin, Riviello, Elisabeth D, Parke, Rachael, Djillali, Annane E, Fowler, Robert, Murthy, Srinivas, Nichol, Alistair, Cheng, Allen C, Semple, Calum ORCID: 0000-0001-9700-0418, George, Maya, Valkonen, Miia, McArthur, Colin, Carson, Gail, O'Neill, Genevieve, Cobb, J Perren, Dunning, Jake, Chiche, Jean-Daniel, Huh, Jin-Won, Marshall, John, Rello, Jordi, Guillebaud, Julia, Razanazatovo, Norosoa, Otieno, Juilett Wambura, Green, Karen, Rowan, Kathy, Baillie, John Kenneth, Merson, Laura, Hsu, Li Yang, Christian, Michael D, Egi, Moritoki, Shindo, Nahoko, Horby, Peter, Pardinaz-Solis, Raul, Ubiergo, Sebastian Ugarte, Webb, Steve AR, Uyeki, Timothy M, Gordon, Anthony C, Paterson, David L, Everett, Dean, Giamarellos-Bourboulis, Evangelos J, Longuere, Kajsa-Stina, Maslove, David, Ohuma, Eric, Growl, Gloria, PedutemHumber, Theresa, EllazarHumber, Edward, Bahinskaya, Ilona, Osbourne-Townsend, Joan, Bentley, Andrew, Goodson, Jennifer, Welters, Ingeborg, Malik, Nadia, Browne, TS and Mahesh, Vinaya (2019) Using research to prepare for outbreaks of severe acute respiratory infection. BMJ GLOBAL HEALTH, 4 (1). e001061-.

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Kumwenda, Benjamin, Canals, Rocío, Predeus, Alexander ORCID: 0000-0002-2750-1599, Zhu, Xiaojun, Kröger, Carsten, Pulford, Caisey, Wenner, Nicolas, Lora, Lizeth Lacharme, Li, Yan, Owen, Siân et al (show 7 more authors) , Everett, Dean, Hokamp, Karsten, Heyderman, Robert, Ashton, Philip, Gordon, Melita ORCID: 0000-0002-0629-0884, Msefula, Chisomo and Hinton, Jay ORCID: 0000-0003-2671-6026 (2023) <i>Salmonella enterica</i>serovar Typhimurium ST313 sublineage 2.2 has emerged in Malawi with a characteristic gene expression signature and a fitness advantage. [Preprint]