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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Yang, Marie, Cornick, Jennifer E, du Plessis, Mignon, Gladstone, Rebecca A, Kwambana-Adams, Brenda A, Lo, Stephanie W, Ebruke, Chinelo, Tonkin-Hill, Gerry, Peno, Chikondi et al (show 16 more authors) , Senghore, Madikay, Obaro, Stephen K, Ousmane, Sani, Pluschke, Gerd, Collard, Jean-Marc, Sigauque, Betuel, French, Neil ORCID: 0000-0003-4814-8293, Klugman, Keith P, Heyderman, Robert S, McGee, Lesley, Antonio, Martin, Breiman, Robert F, von Gottberg, Anne, Everett, Dean B, Kadioglu, Aras ORCID: 0000-0003-1137-6321 and Bentley, Stephen D (2020) Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. COMMUNICATIONS BIOLOGY, 3 (1). 559-.

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Ndhlovu, Victor, Kiran, Anmol ORCID: 0000-0003-2680-2303, Sloan, Derek J, Mandala, Wilson, Nliwasa, Marriott, Everett, Dean B, Kumwenda, Benjamin, Mwapasa, Mphatso, Kontogianni, Konstantina, Kamdolozi, Mercy et al (show 3 more authors) , Corbett, Elizabeth, Caws, Maxine and Davies, Gerry ORCID: 0000-0002-3819-490X (2020) Characterization of DNA methylation in Malawian <i>Mycobacterium tuberculosis</i> clinical isolates. PEERJ, 8. e10432-.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Ebruke, Chinelo, Senghore, Madikay, Lo, Stephanie W, Tientcheu, Peggy-Estelle, Gladstone, Rebecca A, Tonkin-Hill, Gerry, Cornick, Jennifer E, Yang, Marie, Worwui, Archibald et al (show 11 more authors) , McGee, Lesley, Breiman, Robert F, Klugman, Keith P, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Everett, Dean B, Mackenzie, Grant, Croucher, Nicholas J, Roca, Anna, Kwambana-Adams, Brenda A, Antonio, Martin and Bentley, Stephen D (2022) Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci. GENOME BIOLOGY AND EVOLUTION, 14 (4). evac052-.

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Cornick, Jennifer E, Kiran, Anmol M ORCID: 0000-0003-2680-2303, Vivancos, Roberto, Van Aartsen, Jon, Clarke, Jenny, Bevan, Edward, Alsahag, Mansoor, Alaearts, Maaike, Moreno, Laura Bricio, Jenkinson, Howard F et al (show 5 more authors) , Nobbs, Angela H, Anson, James, Kadioglu, Aras ORCID: 0000-0003-1137-6321, French, Neil ORCID: 0000-0003-4814-8293 and Everett, Dean B (2018) Epidemiological and Molecula Characterization of an Invasive Group A Streptococcus <i>emm</i>32.2 Outbreak (vol 55, pg 1837, 2017). JOURNAL OF CLINICAL MICROBIOLOGY, 56 (9). e01001-e01018.

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Cornick, Jennifer E, Kiran, Anmol M ORCID: 0000-0003-2680-2303, Vivancos, Roberto, Van Aartsen, Jon, Clarke, Jenny, Bevan, Edward, Alsahag, Mansoor, Alaearts, Maaike, Moreno, Laura Bricio, Jenkinson, Howard F et al (show 5 more authors) , Nobbs, Angela H, Anson, James, Kadiolgu, Aras, French, Neil ORCID: 0000-0003-4814-8293 and Everett, Dean B (2017) Epidemiological and Molecular Characterization of an Invasive Group A Streptococcus emm32.2 Outbreak. Journal of Clinical Microbiology, 55 (6). pp. 1837-1846.

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Musicha, Patrick, Msefula, Chisomo L, Mather, Alison E, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cain, Amy K, Peno, Chikondi, Kallonen, Teemu, Khonga, Margaret, Denis, Brigitte, Gray, Katherine J et al (show 4 more authors) , Heyderman, Robert S, Thomson, Nicholas R, Everett, Dean B and Feasey, Nicholas A (2019) Genomic analysis of <i>Klebsiella pneumoniae</i> isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 74 (5). pp. 1223-1232.

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Musicha, Patrick, Feasey, Nicholas A, Cain, Amy K, Kallonen, Teemu, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Peno, Chikondi, Khonga, Margaret, Thompson, Sarah, Gray, Katherine J, Mather, Alison E et al (show 4 more authors) , Heyderman, Robert S, Everett, Dean B, Thomson, Nicholas R and Msefula, Chisomo L (2017) Genomic landscape of extended-spectrum β-lactamase resistance in <i>Escherichia coli</i> from an urban African setting. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 72 (6). pp. 1602-1609.

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Lo, Stephanie W ORCID: 0000-0002-2182-0222, Gladstone, Rebecca A ORCID: 0000-0002-7993-3051, van Tonder, Andries J ORCID: 0000-0002-4380-5250, Hawkins, Paulina A, Kwambana-Adams, Brenda, Cornick, Jennifer E ORCID: 0000-0001-6841-9842, Madhi, Shabir A ORCID: 0000-0002-7629-0636, Nzenze, Susan A ORCID: 0000-0003-3906-133X, du Plessis, Mignon ORCID: 0000-0001-9186-0679, Kandasamy, Rama ORCID: 0000-0002-3111-5586 et al (show 13 more authors) , Carter, Philip E, Eser, Özgen Köseoglu, Ho, Pak Leung ORCID: 0000-0002-8811-1308, Elmdaghri, Naima, Shakoor, Sadia, Clarke, Stuart C ORCID: 0000-0002-7009-1548, Antonio, Martin, Everett, Dean B ORCID: 0000-0002-8458-6779, von Gottberg, Anne ORCID: 0000-0002-0243-7455, Klugman, Keith P, McGee, Lesley, Breiman, Robert F ORCID: 0000-0002-7099-2936 and Bentley, Stephen D (2018) Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine. Journal of clinical microbiology, 56 (7). e00228-e00218.

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Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Hinds, Jason, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Gould, Katherine A, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Msefula, Chisomo, Cornick, Jennifer E, Kulohoma, Benard W, Gray, Katherine, Bentley, Stephen D et al (show 3 more authors) , French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S and Everett, Dean B (2015) High multiple carriage and emergence of <i>Streptococcus pneumoniae</i> vaccine serotype variants in Malawian children. BMC INFECTIOUS DISEASES, 15 (1). 234-.

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Bar-Zeev, Naor, Swarthout, Todd D, Everett, Dean B, Alaerts, Maaike, Msefula, Jacquline, Brown, Comfort, Bilima, Sithembile, Mallewa, Jane, King, Carina, von Gottberg, Anne et al (show 7 more authors) , Verani, Jennifer R, Whitney, Cynthia G, Mwansambo, Charles, Gordon, Stephen B, Cunliffe, Nigel A ORCID: 0000-0002-5449-4988, French, Neil ORCID: 0000-0003-4814-8293 and Heyderman, Robert S (2021) Impact and effectiveness of 13-valent pneumococcal conjugate vaccine on population incidence of vaccine and non-vaccine serotype invasive pneumococcal disease in Blantyre, Malawi, 2006-18: prospective observational time-series and case-control studies. LANCET GLOBAL HEALTH, 9 (7). E989-E998.

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Jacques, Laura C, Panagiotou, Stavros ORCID: 0000-0001-9972-5068, Baltazar, Murielle ORCID: 0000-0002-1972-2308, Senghore, Madikay, Khandaker, Shadia, Xu, Rong, Bricio-Moreno, Laura, Yang, Marie, Dowson, Christopher G, Everett, Dean B et al (show 2 more authors) , Neill, Daniel R ORCID: 0000-0002-7911-8153 and Kadioglu, Aras ORCID: 0000-0003-1137-6321 (2020) Increased pathogenicity of pneumococcal serotype 1 is driven by rapid autolysis and release of pneumolysin. NATURE COMMUNICATIONS, 11 (1). 1892-.

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Gladstone, Rebecca A, Lo, Stephanie W, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Corander, Jukka, Page, Andrew J, Marttinen, Pekka, Bentley, Leon J, Ochoa, Theresa J et al (show 16 more authors) , Ho, Pak Leung, du Plessis, Mignon, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, McGee, Lesley, Breiman, Robert F and Bentley, Stephen D (2019) International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBIOMEDICINE, 43. pp. 338-346.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Lees, John A, du Plessis, Mignon, Benisty, Rachel, Givon-Lavi, Noga, Hawkins, Paulina A, Cornick, Jennifer E, Kwambana-Adams, Brenda et al (show 80 more authors) , Law, Pierra Y, Ho, Pak Leung, Antonio, Martin, Everett, Dean B, Dagan, Ron, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D, Brooks, Abdullah W, Corso, Alejandra, Davydov, Alexander, Maguire, Alison, Pollard, Andrew, Kiran, Anmol ORCID: 0000-0003-2680-2303, Skoczynska, Anna, Moiane, Benild, Beall, Bernard, Sigauque, Betuel, Aanensen, David, Lehmann, Deborah, Faccone, Diego, Faster-Nyarko, Ebenezer, Bojang, Ebrima, Egorova, Ekaterina, Voropaeva, Elena, Sampane-Donkor, Eric, Sadowy, Ewa, Bigogo, Godfrey, Mucavele, Helio, Belabbes, Houria, Diawara, Idrissa, Moisi, Jennifer, Verani, Jennifer, Keenan, Jeremy, Nair, Jyothish N, Bhai, Thulasee, Ndlangisa, Kedibone M, Zerouali, Khalid, Ravikumar, KL, Titov, Leonid, De Gouveia, Linda, Alaerts, Maaike, Ip, Margaret, Brandileone, Maria Cristina de Cunto, Hasanuzzaman, Md, Paragi, Metka, Nurse-Lucas, Michele, Ali, Mushal, Elmdaghri, Naima, Croucher, Nicholas, Wolter, Nicole, Porat, Nttrit, Eser, Ozgen Kaseoglu, Akpaka, Patrick E, Turner, Paul, Gagetti, Paula, Tientcheu, Peggy-Estelle, Carter, Philip E, Mostowy, Rafal, Kandasamy, Rarna, Ford, Rebecca, Henderson, Rebecca, Malaker, Roly, Shakoor, Sadia, Almeida, Samanta Cristine Grassi, Saha, Samir K, Doiphode, Sanjay, Madhi, Shabir A, Sekaran, Shamala Devi, Srifuengfung, Somporn, Obaro, Stephen, Clarke, Stuart C, Nzenze, Susan A, Kastrin, Tamara, Ochoa, Theresa J, Balaji, Veeraraghavan, Hryniewicz, Waleria and Urban, Yulia (2019) Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study. LANCET INFECTIOUS DISEASES, 19 (7). pp. 759-769.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cornick, Jennifer E, Andam, Cheryl P, Gladstone, Rebecca A, Alaerts, Maaike, Musicha, Patrick, Peno, Chikondi, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Kiran, Anmol M ORCID: 0000-0003-2680-2303 et al (show 9 more authors) , Msefula, Chisomo L, McGee, Lesley, Breiman, Robert F, Kadioglu, Aras ORCID: 0000-0003-1137-6321, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S, Hanage, William P, Bentley, Stephen D and Everett, Dean B (2017) Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi. VACCINE, 35 (35). pp. 4594-4602.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Andam, Cheryl P, Harris, Simon R, Cornick, Jennifer E, Yang, Marie, Bricio-Moreno, Laura, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Parkhill, Julian, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S et al (show 4 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Everett, Dean B, Bentley, Stephen D and Hanage, William P (2016) Recombination in <i>Streptococcus pneumoniae</i> Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule. MBIO, 7 (5). e01053-e01016.

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Ndlangisa, Kedibone M, du Plessis, Mignon, Lo, Stephanie, de Gouveia, Linda, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Antonio, Martin, Kwambana-Adams, Brenda, Cornick, Jennifer, Everett, Dean B, Dagan, Ron et al (show 32 more authors) , Hawkins, Paulina A, Beall, Bernard, Corso, Alejandra, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Obaro, Stephen, Shakoor, Sadia, Donkor, Eric S, Gladstone, Rebecca A, Ho, Pak Leung, Paragi, Metka, Doiphode, Sanjay, Srifuengfung, Somporn, Ford, Rebecca, Moisi, Jennifer, Saha, Samir K, Bigogo, Godfrey, Sigauque, Betuel, Eser, Ozgen Koseoglu, Elmdaghri, Naima, Titov, Leonid, Turner, Paul, Kumar, KL Ravi, Kandasamy, Rama, Egorova, Ekaterina, Ip, Margaret, Breiman, Robert F, Klugman, Keith P, McGee, Lesley, Bentley, Stephen D, von Gottberg, Anne and Con, Global Pneumococcal Sequencing (2022) A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. MICROBIAL GENOMICS, 8 (4).

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Musicha, Patrick, Cornick, Jennifer E, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, French, Neil ORCID: 0000-0003-4814-8293, Masesa, Clemens, Denis, Brigitte, Kennedy, Neil, Mallewa, Jane, Gordon, Melita A ORCID: 0000-0002-0629-0884, Msefula, Chisomo L et al (show 3 more authors) , Heyderman, Robert S, Everett, Dean B and Feasey, Nicholas A (2017) Trends in antimicrobial resistance in bloodstream infection isolates at a large urban hospital in Malawi (1998-2016): a surveillance study. LANCET INFECTIOUS DISEASES, 17 (10). pp. 1042-1052.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cornick, Jennifer E, Harris, Simon R, Andam, Cheryl P, Bricio-Moreno, Laura, Yang, Marie, Yalcin, Feyruz, Ousmane, Sani, Govindpersad, Shanil, Senghore, Madikay et al (show 19 more authors) , Ebruke, Chinelo, Du Plessis, Mignon, Kiran, Anmol M ORCID: 0000-0003-2680-2303, Pluschke, Gerd, Sigauque, Betuel, McGee, Lesley, Klugman, Keith P, Turner, Paul, Corander, Jukka, Parkhill, Julian, Collard, Jean-Marc, Antonio, Martin, von Gottberg, Anne, Heyderman, Robert S, French, Neil ORCID: 0000-0003-4814-8293, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Hanage, William P, Everett, Dean B and Bentley, Stephen D (2016) Understanding pneumococcal serotype 1 biology through population genomic analysis. BMC INFECTIOUS DISEASES, 16 (1). 649-.

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Gladstone, Rebecca A, Lo, Stephanie W, Goater, Richard, Yeats, Corin, Taylor, Ben, Hadfield, James, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Bentley, Leon J et al (show 32 more authors) , Quah, Fu Xiang, Blaschke, Anne J, Pershing, Nicole L, Byington, Carrie L, Balaji, Veeraraghavan, Hryniewicz, Waleria, Sigauque, Betuel, Ravikumar, KL, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Ho, Pak Leung, du Plessis, Mignon, Ndlangisa, Kedibone M, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Pollard, Andrew J, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, Metcalf, Benjamin J, Li, Yuan, Beall, Bernard W, McGee, Lesley, Breiman, Robert F, Aanensen, David M and Bentley, Stephen D (2020) Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. MICROBIAL GENOMICS, 6 (5). pp. 1-13.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Du Plessis, Mignon, Cornick, Jennifer E, Hawkins, Paulina A, Madhi, Shabir A, Nzenze, Susan A, Kandasamy, Rama, Ravikumar, KL et al (show 18 more authors) , Elmdaghri, Naima, Kwambana-Adams, Brenda, Grassi Almeida, Samanta Cristine, Skoczynska, Anna, Egorova, Ekaterina, Titov, Leonid, Saha, Samir K, Paragi, Metka, Everett, Dean B, Antonio, Martin, Klugman, Keith P, Li, Yuan, Metcalf, Benjamin J, Beall, Bernard, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D and von Gottberg, Anne (2020) A mosaic tetracycline resistance gene <i>tet</i>(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 75 (3). pp. 512-520.