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Moore, Shona C ORCID: 0000-0001-8610-2806, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Randle, Nadine ORCID: 0000-0002-3775-9585, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Hartley, Catherine, Haldenby, Sam, Dong, Xiaofeng, Alrezaihi, Abdulrahman, Almsaud, Mai et al (show 36 more authors) , Bentley, Eleanor, Clark, Jordan, Garcia-Dorival, Isabel ORCID: 0000-0002-5654-5662, Gilmore, Paul, Han, Ximeng, Jones, Benjamin, Luu, Lisa ORCID: 0000-0002-7748-5961, Sharma, Parul ORCID: 0000-0002-9090-7540, Shawli, Ghada, Sun, Yani, Zhao, Qin, Pullan, Steven T, Carter, Daniel P, Bewley, Kevin, Dunning, Jake, Zhou, En-min, Solomon, Tom ORCID: 0000-0001-7266-6547, Beadsworth, Michael, Cruise, James, Crook, Derrick W, Matthews, David A, Davidson, Andrew D, Mahmood, Zana ORCID: 0000-0001-6000-6648, Aljabr, Waleed ORCID: 0000-0002-9385-2776, Druce, Julian, Vipond, Richard, Ng, Lisa ORCID: 0000-0003-4071-5222, Renia, Laurent, Openshaw, Peter JM, Baillie, J Kenneth, Carroll, Miles W, Stewart, James ORCID: 0000-0002-8928-2037, Darby, Alistair ORCID: 0000-0002-3786-6209, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance ORCID: 0000-0002-0778-1693 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2020) Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism. VIRUSES-BASEL, 12 (10). E1164-.

Royden, Alexandra, Christley, Robert ORCID: 0000-0001-9250-3032, Jones, Trevor, Williams, Amelia, Awad, Faez, Haldenby, Sam, Wigley, Paul, Rushton, Steven P and Williams, Nicola J (2021) Campylobacter Contamination at Retail of Halal Chicken Produced in the United Kingdom. JOURNAL OF FOOD PROTECTION, 84 (8). pp. 1433-1445.

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Carroll, Miles W, Haldenby, Sam, Rickett, Natasha Y, Palyi, Bernadett, Garcia-Dorival, Isabel ORCID: 0000-0002-5654-5662, Liu, Xuan, Barker, Gary, Bore, Joseph Akoi, Koundouno, Fara Raymond, Williamson, E Diane et al (show 16 more authors) , Laws, Thomas R, Kerber, Romy, Sissoko, Daouda, Magyar, Nora, Di Caro, Antonino, Biava, Mirella, Fletcher, Tom E, Sprecher, Armand, Ng, Lisa FP ORCID: 0000-0003-4071-5222, Renia, Laurent, Magassouba, N'faly, Guenther, Stephan, Woelfel, Roman, Stoecker, Kilian, Matthews, David A and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2017) Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut. MSPHERE, 2 (04).

Williams, David, Evans, Benjamin, Haldenby, Sam, Walshaw, Martin J, Brockhurst, Michael A, Winstanley, Craig ORCID: 0000-0002-2662-8053 and Paterson, Steve ORCID: 0000-0002-1307-2981 (2015) Divergent, CoexistingPseudomonas aeruginosaLineages in Chronic Cystic Fibrosis Lung Infections. American Journal of Respiratory and Critical Care Medicine, 191 (7). pp. 775-785.

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Burgess, Stewart TG, Bartley, Kathryn, Nunn, Francesca, Wright, Harry W, Hughes, Margaret ORCID: 0000-0001-7251-6821, Gemmell, Matthew, Haldenby, Sam, Paterson, Steve ORCID: 0000-0002-1307-2981, Rombauts, Stephane, Tomley, Fiona M et al (show 8 more authors) , Blake, Damer P, Pritchard, James, Schicht, Sabine, Strube, Christina, Oines, Oivind, Van Leeuwen, Thomas, Van de Peer, Yves and Nisbet, Alasdair J (2018) Draft Genome Assembly of the Poultry Red Mite, <i>Dermanyssus gallinae</i>. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 7 (18). e01221-e01218.

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Burgess, Stewart TG, Bartley, Kathryn, Marr, Edward J, Wright, Harry W, Weaver, Robert J, Prickett, Jessica C, Hughes, Margaret ORCID: 0000-0001-7251-6821, Haldenby, Sam, Thi Le, Phuong, Rombauts, Stephane et al (show 3 more authors) , Van Leeuwen, Thomas, Van de Peer, Yves and Nisbet, Alasdair J (2018) Draft Genome Assembly of the Sheep Scab Mite, Psoroptes ovis. Genome announcements, 6 (16). e00265-e00218.

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Stirrup, Oliver, Blackstone, James, Mapp, Fiona, MacNeil, Alyson, Panca, Monica, Holmes, Alison ORCID: 0000-0001-5554-5743, Machin, Nicholas, Shin, Gee Yen, Mahungu, Tabitha, Saeed, Kordo et al (show 39 more authors) , Saluja, Tranprit, Taha, Yusri, Mahida, Nikunj, Pope, Cassie, Chawla, Anu, Cutino-Moguel, Maria-Teresa, Tamuri, Asif, Williams, Rachel, Darby, Alistair ORCID: 0000-0002-3786-6209, Robertson, David L, Flaviani, Flavia, Nastouli, Eleni, Robson, Samuel, Smith, Darren, Loose, Matthew, Laing, Kenneth, Monahan, Irene, Kele, Beatrix, Haldenby, Sam, George, Ryan, Bashton, Matthew, Witney, Adam A, Byott, Matthew, Coll, Francesc, Chapman, Michael, Peacock, Sharon J, Hughes, Joseph, Nebbia, Gaia, Partridge, David G, Parker, Matthew, Price, James Richard, Peters, Christine, Roy, Sunando, Snell, Luke B, de, Silva Thushan I, Thomson, Emma, Flowers, Paul, Copas, Andrew and Breuer, Judith (2022) Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study. ELIFE, 11. e78427-.

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Jackson, Ben, Boni, Maciej F, Bull, Matthew J, Colleran, Amy, Colquhoun, Rachel M, Darby, Alistair C ORCID: 0000-0002-3786-6209, Haldenby, Sam, Hill, Verity, Lucaci, Anita, McCrone, John T et al (show 14 more authors) , Nicholls, Samuel M, O’Toole, Áine, Pacchiarini, Nicole, Poplawski, Radoslaw, Scher, Emily, Todd, Flora ORCID: 0000-0001-5293-6394, Webster, Hermione J, Whitehead, Mark ORCID: 0000-0002-0452-1511, Wierzbicki, Claudia ORCID: 0000-0001-7266-2597, Loman, Nicholas J, Connor, Thomas R, Robertson, David L, Pybus, Oliver G and Rambaut, Andrew (2021) Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic. Cell, 184 (20). 5179-+.

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Quinn, Leonard M, Haldenby, Sam, Antzcak, Philip, Fowler, Anna, Bullock, Katie ORCID: 0000-0002-5758-0179, Kenny, John, Gilbert, Timothy, Andrews, Timothy, Diaz-Nieto, Rafael, Fenwick, Stephen et al (show 7 more authors) , Jones, Robert ORCID: 0000-0001-5608-001X, Costello-Goldring, Eithne, Poston, Graeme, Greenhalf, William ORCID: 0000-0002-1865-3195, Palmer, Daniel, Malik, Hassan and Goldring, Chris (2023) Genomic profiling of idiopathic peri-hilar cholangiocarcinoma reveals new targets and mutational pathways. Scientific Reports, 13 (1). 6681-.

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Gaither, Michelle R, Gkafas, Georgios A, de Jong, Menno, Sarigol, Fatih, Neat, Francis, Regnier, Thomas, Moore, Daniel, Grocke, Darren R, Hall, Neil, Liu, Xuan et al (show 5 more authors) , Kenny, John, Lucaci, Anita, Hughes, Margaret ORCID: 0000-0001-7251-6821, Haldenby, Sam and Hoelzel, A Rus (2018) Genomics of habitat choice and adaptive evolution in a deep-sea fish. NATURE ECOLOGY & EVOLUTION, 2 (4). pp. 680-687.

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Wardle, Roisin, Pullman, Jane A ORCID: 0000-0002-7563-074X, Haldenby, Sam, Ressel, Lorenzo ORCID: 0000-0002-6614-1223, Pope, Marion, Clegg, Peter D ORCID: 0000-0003-0632-0032, Radford, Alan ORCID: 0000-0002-4590-1334, Stewart, James P ORCID: 0000-0002-8928-2037, Al-Saadi, Mohammed ORCID: 0000-0003-2751-862X, Dyer, Philip et al (show 1 more authors) and Peffers, Mandy J ORCID: 0000-0001-6979-0440 (2017) Identification of Equid herpesvirus 2 in tissue-engineered equine tendon. Wellcome open research, 2. 60-.

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Lum, Fok-Moon, Narang, Vipin, Hue, Susan, Chen, Jie, McGovern, Naomi, Rajarethinam, Ravisankar, Tan, Jeslin JL, Amrun, Siti Naqiah, Chan, Yi-Hao, Lee, Cheryl YP et al (show 12 more authors) , Chua, Tze-Kwang, Yee, Wearn-Xin, Yeo, Nicholas KW, Tan, Thiam-Chye, Liu, Xuan, Haldenby, Sam, Leo, Yee-sin, Ginhoux, Florent, Chan, Jerry KY, Hiscox, Julian ORCID: 0000-0002-6582-0275, Chong, Chia-Yin and Ng, Lisa FP ORCID: 0000-0003-4071-5222 (2019) Immunological observations and transcriptomic analysis of trimester-specific full-term placentas from three Zika virus-infected women. Clinical and Translational Immunology, 8 (11). e01082-.

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Haldenby, Sam, Bronowski, Christina ORCID: 0000-0001-8089-4021, Nelson, Charlotte, Kenny, John, Martinez-Rodriguez, Carmen, Chaudhuri, Roy, Williams, Nicola J, Forbes, Ken, Strachan, Norval J, Pulman, Jane et al (show 8 more authors) , Winstanley, Ian N, Corless, Caroline E, Humphrey, Tom J, Bolton, Frederick J, O'Brien, Sarah J ORCID: 0000-0003-2896-8999, Hall, Neil, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Winstanley, Craig ORCID: 0000-0002-2662-8053 (2020) Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom. PLOS ONE, 15 (01). e0227535-.

Ransom-Jones, Emma, McCarthy, Alan J, Haldenby, Sam, Doonan, James and McDonald, James E (2017) Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity. mSphere, 2 (4). e00300-e00317.

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Radford, Alan D ORCID: 0000-0002-4590-1334, Singleton, David A ORCID: 0000-0002-1980-5410, Jewell, Chris, Appleton, Charlotte, Rowlingson, Barry, Hale, Alison C, Cuartero, Carmen Tamayo, Newton, Richard, Sanchez-Vizcaino, Fernando, Greenberg, Danielle et al (show 7 more authors) , Brant, Beth, Bentley, Eleanor G, Stewart, James P ORCID: 0000-0002-8928-2037, Smith, Shirley, Haldenby, Sam, Noble, P-JM and Pinchbeck, Gina L ORCID: 0000-0002-5671-8623 (2021) Outbreak of Severe Vomiting in Dogs Associated with a Canine Enteric Coronavirus, United Kingdom. EMERGING INFECTIOUS DISEASES, 27 (2). pp. 517-528.

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Charras, Amandine ORCID: 0000-0001-6760-5459, Hofmann, Sigrun R, Cox, Allison, Schulze, Felix, Russ, Susanne, Northey, Sarah, Liu, Xuan, Fang, Yongxiang, Haldenby, Sam, Hartmann, Hella et al (show 16 more authors) , Bassuk, Alexander G, Carvalho, Ana, Sposito, Francesca ORCID: 0009-0007-0272-0318, Grinstein, Lev, Rösen-Wolff, Angela, Meyer-Bahlburg, Almut, Beresford, Michael W, Lainka, Elke, Föll, Dirk, Wittkowski, Helmut, Girschick, Hermann J, Morbach, Henner, Uebe, Steffen, Hüffmeier, Ulrike, Ferguson, Polly J and Hedrich, Christian M ORCID: 0000-0002-1295-6179 (2024) P2RX7 gene variants associate with altered inflammasome assembly and reduced pyroptosis in chronic nonbacterial osteomyelitis (CNO). Journal of autoimmunity, 144. p. 103183.

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Charras, Amandine, Haldenby, Sam, Smith, Eve MD, Egbivwie, Naomi, Olohan, Lisa, Kenny, John G, Schwarz, Klaus, Roberts, Carla, Al-Abadi, Eslam, Armon, Kate et al (show 16 more authors) , Bailey, Kathryn, Ciurtin, Coziana, Gardner-Medwin, Janet, Haslam, Kirsty, Hawley, Daniel P, Leahy, Alice, Leone, Valentina, McErlane, Flora, Modgil, Gita, Pilkington, Clarissa, Ramanan, Athimalaipet V, Rangaraj, Satyapal, Riley, Phil, Sridhar, Arani, Beresford, Michael W and Hedrich, Christian M ORCID: 0000-0002-1295-6179 (2023) Panel sequencing links rare, likely damaging gene variants with distinct clinical phenotypes and outcomes in juvenile-onset SLE. RHEUMATOLOGY, 62 (SI2). SI210-SI225.

Wardell, Kayleigh, Haldenby, Sam, Jones, Nathan, Liddell, Susan, Ngo, Greg HP and Allers, Thorsten (2017) RadB acts in homologous recombination in the archaeon <i>Haloferax volcanii</i>, consistent with a role as recombination mediator. DNA REPAIR, 55. pp. 7-16.

Zendri, Flavia, Schmidt, Vanessa ORCID: 0000-0001-5460-6217, Mauder, Norman, Loeffler, Anette, Jepson, Rosanne Ellen, Isgren, Cajsa, Pinchbeck, Gina, Haldenby, Sam and Timofte, Dorina ORCID: 0000-0002-7261-738X (2024) Rapid typing of <i>Klebsiella pneumoniae</i> and <i>Pseudomonas aeruginosa</i> by Fourier-transform Infrared spectroscopy informs infection control in veterinary settings. Frontiers in microbiology, 15. 1334268-.

D'Amore, Rosalinda ORCID: 0000-0002-2638-4466, Johnson, James ORCID: 0000-0002-8849-0993, Haldenby, Sam, Hall, Neil, Hughes, Margaret ORCID: 0000-0001-7251-6821, Joynson, Ryan, Kenny, John G, Patron, Nicola, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Hall, Anthony (2017) SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms. BIOTECHNIQUES, 63 (1). pp. 13-20.

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Thornton, Sophie, Coupland, Sarah E ORCID: 0000-0002-1464-2069, Olohan, Lisa, Sibbring, Julie S ORCID: 0000-0001-9178-6851, Kenny, John G, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Liu, Xuan, Haldenby, Sam, Heimann, Heinrich, Hussain, Rumana ORCID: 0000-0001-8208-5009 et al (show 3 more authors) , Kipling, Natalie, Taktak, Azzam and Kalirai, Helen ORCID: 0000-0002-4440-2576 (2020) Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma. CANCERS, 12 (4). E1039-.

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Huson, Kathryn M, Atcheson, Erwan, Oliver, Nicola AM, Best, Philip, Barley, Jason P, Hanna, Robert EB, McNeilly, Tom N, Fang, Yongxiang ORCID: 0000-0002-4514-5292, Haldenby, Sam, Paterson, Steve ORCID: 0000-0002-1307-2981 et al (show 1 more authors) and Robinson, Mark W (2021) Transcriptome and Secretome Analysis of Intra-Mammalian Life-Stages of Calicophoron daubneyi Reveals Adaptation to a Unique Host Environment. Molecular & cellular proteomics : MCP, 20. 100055-.

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Huson, Kathryn M, Atcheson, Erwan, Oliver, Nicola AM, Best, Philip, Barley, Jason P, Hanna, Robert EB, McNeilly, Tom N, Fang, Yongxiang, Haldenby, Sam, Paterson, Steve ORCID: 0000-0002-1307-2981 et al (show 1 more authors) and Robinson, Mark W (2021) Transcriptome and secretome analysis of intra-mammalian life-stages of the emerging helminth pathogen, Calicophoron daubneyi reveals adaptation to a unique host environment. Molecular & Cellular Proteomics, 20. mcp.RA120.002175-mcp.RA120.002175.

Williams, David, Fothergill, Joanne L ORCID: 0000-0002-7012-1508, Evans, Benjamin, Caples, Jessica, Haldenby, Sam, Walshaw, Martin J, Brockhurst, Michael A, Winstanley, Craig ORCID: 0000-0002-2662-8053 and Paterson, Steve ORCID: 0000-0002-1307-2981 (2018) Transmission and lineage displacement drive rapid population genomic flux in cystic fibrosis airway infections of a Pseudomonas aeruginosa epidemic strain. MICROBIAL GENOMICS, 4 (3). e000167-.

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Charras, Amandine, Hofmann, Sigrun R, Cox, Allison, Schulze, Felix, Russ, Susanne, Northey, Sarah, Liu, Xuan, Fang, Yongxiang, Haldenby, Sam, Hartmann, Hella et al (show 16 more authors) , Bassuk, A, Carvalho, Ana, Sposito, Francesca ORCID: 0009-0007-0272-0318, Grinstein, Lev, Rösen-Wolff, Angela, Meyer-Bahlburg, Almut, Beresford, Michael, Lainka, Elke, Föll, Dirk, Wittkowski, Helmut, Girschick, Hermann J, Morbach, Henner, Uebe, Steffen, Huffmeier, Ulrike, Ferguson, Polly and Hedrich, Christian M ORCID: 0000-0002-1295-6179 <i>P2RX7</i> Gene Variants Associate with Altered Inflammasome Assembly and Reduced Pyroptosis in Chronic Nonbacterial Osteomyelitis (CNO). [Preprint]