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Obaid, Abdullah Y, Sabir, Jamal SM, Atef, Ahmed, Liu, Xuan, Edris, Sherif, El-Domyati, Fotouh M, Mutwakil, Mohammed Z, Gadalla, Nour O, Hajrah, Nahid H, Al-Kordy, Magdy A et al (show 3 more authors) , Hall, Neil, Bahieldin, Ahmed and Jansen, Robert K (2016) Analysis of transcriptional response to heat stress in Rhazya stricta. BMC PLANT BIOLOGY, 16 (1). 252-.

Sibbring, JS ORCID: 0000-0001-9178-6851 (2018) Application of Next-Generation Sequencing to Genomic Structural Variation Detection for Genetic Diagnosis of Rare Disorders. PhD thesis, University of Liverpool.

Radford, Alan D ORCID: 0000-0002-4590-1334, Chapman, David, Dixon, Linda, Chantrey, Julian ORCID: 0000-0002-4801-7034, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Hall, Neil (2012) Application of next-generation sequencing technologies in virology. JOURNAL OF GENERAL VIROLOGY, 93 (Pt 9). pp. 1853-1868.

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Kasumba, Irene N, Pulford, Caisey V, Perez-Sepulveda, Blanca M, Sen, Sunil, Sayed, Nurulla, Permala-Booth, Jasnehta, Livio, Sofie, Heavens, Darren, Low, Ross, Hall, Neil et al (show 35 more authors) , Roose, Anna, Powell, Helen, Farag, Tamer, Panchalingham, Sandra, Berkeley, Lynette, Nasrin, Dilruba, Blackwelder, William C, Wu, Yukun, Tamboura, Boubou, Sanogo, Doh, Onwuchekwa, Uma, Sow, Samba O, Ochieng, John B, Omore, Richard, Oundo, Joseph O, Breiman, Robert F, Mintz, Eric D, O'Reilly, Ciara E, Antonio, Martin, Saha, Debasish, Hossain, M Jahangir, Mandomando, Inacio, Bassat, Quique, Alonso, Pedro L, Ramamurthy, T, Sur, Dipika, Qureshi, Shahida, Zaidi, Anita KM, Hossain, Anowar, Faruque, Abu SG, Nataro, James P, Kotloff, Karen L, Levine, Myron M, Hinton, Jay CD ORCID: 0000-0003-2671-6026 and Tennant, Sharon M (2021) Characteristics of <i>Salmonella</i> Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study. CLINICAL INFECTIOUS DISEASES, 73 (4). pp. 631-641.

Low, RS (2018) Comparative approaches to genome evolution in Blastocystis and Entamoeba. PhD thesis, University of Liverpool.

Alshehri, EA (2019) Comparative genomic analysis of Neospora caninum and Toxoplasma gondii. Unspecified thesis, University of Liverpool.

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Parsons, Bryony N ORCID: 0000-0003-3599-1089, Ijaz, Umer Z, D'Amore, Rosalinda ORCID: 0000-0002-2638-4466, Burkitt, Michael D ORCID: 0000-0002-5055-6408, Eccles, Richard ORCID: 0000-0001-7210-6689, Lenzi, Luca ORCID: 0000-0003-2697-691X, Duckworth, Carrie A ORCID: 0000-0001-9992-7540, Moore, Andrew R, Tiszlavicz, Laszlo, Varro, Andrea et al (show 2 more authors) , Hall, Neil and Pritchard, D Mark ORCID: 0000-0001-7971-3561 (2017) Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13 (11). e1006653-.

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Goodhead, Ian, Archibald, Alan, Amwayi, Peris, Brass, Andy, Gibson, John, Hall, Neil, Hughes, Margaret A ORCID: 0000-0001-7251-6821, Limo, Moses, Iraqi, Fuad, Kemp, Stephen J et al (show 1 more authors) and Noyes, Harry A ORCID: 0000-0002-0656-200X (2010) A Comprehensive Genetic Analysis of Candidate Genes Regulating Response to <i>Trypanosoma</i> <i>congolense</i> Infection in Mice. PLOS NEGLECTED TROPICAL DISEASES, 4 (11). e880-.

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Nyangiri, Oscar A, Noyes, Harry ORCID: 0000-0002-0656-200X, Mulindwa, Julius, Ilboudo, Hamidou, Kabore, Justin Windingoudi, Ahouty, Bernardin, Koffi, Mathurin, Asina, Olivier Fataki, Mumba, Dieudonne, Ofon, Elvis et al (show 14 more authors) , Simo, Gustave, Kimuda, Magambo Phillip, Enyaru, John, Alibu, Vincent Pius, Kamoto, Kelita, Chisi, John, Simuunza, Martin, Camara, Mamadou, Sidibe, Issa, MacLeod, Annette, Bucheton, Bruno, Hall, Neil, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Matovu, Enock (2020) Copy number variation in human genomes from three major ethno-linguistic groups in Africa. BMC GENOMICS, 21 (1). 289-.

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Frau, Alessandra ORCID: 0000-0002-6885-1042, Kenny, John G, Lenzi, Luca ORCID: 0000-0003-2697-691X, Campbell, Barry J ORCID: 0000-0002-7407-012X, Ijaz, Umer Z, Duckworth, Carrie A ORCID: 0000-0001-9992-7540, Burkitt, Michael D ORCID: 0000-0002-5055-6408, Hall, Neil, Anson, Jim, Darby, Alistair C ORCID: 0000-0002-3786-6209 et al (show 1 more authors) and Probert, Christopher SJ ORCID: 0000-0003-4550-0239 (2019) DNA extraction and amplicon production strategies deeply influence the outcome of gut mycobiome studies. SCIENTIFIC REPORTS, 9 (1). 9328-.

Staton, Gareth J ORCID: 0000-0003-4100-8597, Clegg, Simon R, Ainsworth, Stuart, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Carter, Stuart D ORCID: 0000-0002-3585-9400, Radford, Alan D ORCID: 0000-0002-4590-1334, Darby, Alistair ORCID: 0000-0002-3786-6209, Wastling, Jonathan, Hall, Neil and Evans, Nicholas J ORCID: 0000-0002-2950-1007 (2021) Dissecting the molecular diversity and commonality of bovine and human treponemes identifies key survival and adhesion mechanisms. PLOS PATHOGENS, 17 (3). e1009464-.

Johnson, James R ORCID: 0000-0002-8849-0993, D'Amore, Rosalinda ORCID: 0000-0002-2638-4466, Thain, Simon C ORCID: 0000-0001-8041-4112, Craig, Thomas ORCID: 0000-0001-7029-310X, Mccue, Hannah V, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Hall, Neil and Hall, Anthony JW (2016) GeneMill: A 21st century platform for innovation. BIOCHEMICAL SOCIETY TRANSACTIONS, 44 (3). pp. 681-683.

Wilson, Ian W ORCID: 0000-0001-7303-164X, Weedall, Gareth D, Lorenzi, Hernan, Howcroft, Timothy, Hon, Chung-Chau, Deloger, Marc, Guillén, Nancy, Paterson, Steve ORCID: 0000-0002-1307-2981, Clark, C Graham and Hall, Neil (2019) Genetic diversity and gene family expansions in members of the genus Entamoeba. Genome biology and evolution, 11 (3). pp. 688-705.

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Li, Yan ORCID: 0000-0002-7480-9545, Pulford, Caisey, Díaz, Paula, Perez-Sepulveda, Blanca ORCID: 0000-0002-2891-4010, Duarte, Carolina, Predeus, Alexander ORCID: 0000-0002-2750-1599, Wiesner, Magdalena, Heavens, Darren ORCID: 0000-0001-5418-7868, Low, Ross, Schudoma, Christian et al (show 5 more authors) , Lipscombe, James, Montaño, Angeline, Hall, Neil, Moreno, Jaime and Hinton, Jay ORCID: 0000-0003-2671-6026 (2019) Genomic and phylogenetic analysis ofSalmonellaTyphimurium and its monophasic variants responsible for invasive endemic infections in Colombia. BioRxiv.

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Gaither, Michelle R, Gkafas, Georgios A, de Jong, Menno, Sarigol, Fatih, Neat, Francis, Regnier, Thomas, Moore, Daniel, Grocke, Darren R, Hall, Neil, Liu, Xuan et al (show 5 more authors) , Kenny, John, Lucaci, Anita, Hughes, Margaret ORCID: 0000-0001-7251-6821, Haldenby, Sam and Hoelzel, A Rus (2018) Genomics of habitat choice and adaptive evolution in a deep-sea fish. NATURE ECOLOGY & EVOLUTION, 2 (4). pp. 680-687.

Foster, Geraldine HIV-1 in the United Kingdom: population dynamics and genetic evolution. Doctor of Philosophy thesis, University of Liverpool.

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Gardiner, Laura-Jayne, Joynson, Ryan, Omony, Jimmy, Rusholme-Pilcher, Rachel, Olohan, Lisa, Lang, Daniel, Bai, Caihong, Hawkesford, Malcolm, Salt, David, Spannagl, Manuel et al (show 5 more authors) , Mayer, Klaus FX, Kenny, John, Bevan, Michael, Hall, Neil and Hall, Anthony (2018) Hidden variation in polyploid wheat drives local adaptation. GENOME RESEARCH, 28 (9). pp. 1319-1332.

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Mulindwa, Julius, Noyes, Harry ORCID: 0000-0002-0656-200X, Ilboudo, Hamidou, Pagani, Luca, Nyangiri, Oscar, Kimuda, Magambo Phillip, Ahouty, Bernardin, Asina, Olivier Fataki, Ofon, Elvis, Kamoto, Kelita et al (show 17 more authors) , Kabore, Justin Windingoudi, Koffi, Mathurin, Ngoyi, Dieudonne Mumba, Simo, Gustave, Chisi, John, Sidibe, Issa, Enyaru, John, Simuunza, Martin, Alibu, Pius, Jamonneau, Vincent, Camara, Mamadou, Tait, Andy, Hall, Neil, Bucheton, Bruno, MacLeod, Annette, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Matovu, Enock (2020) High Levels of Genetic Diversity within Nilo-Saharan Populations: Implications for Human Adaptation. AMERICAN JOURNAL OF HUMAN GENETICS, 107 (3). pp. 473-486.

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Haldenby, Sam, Bronowski, Christina ORCID: 0000-0001-8089-4021, Nelson, Charlotte, Kenny, John, Martinez-Rodriguez, Carmen, Chaudhuri, Roy, Williams, Nicola J, Forbes, Ken, Strachan, Norval J, Pulman, Jane et al (show 8 more authors) , Winstanley, Ian N, Corless, Caroline E, Humphrey, Tom J, Bolton, Frederick J, O'Brien, Sarah J ORCID: 0000-0003-2896-8999, Hall, Neil, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Winstanley, Craig ORCID: 0000-0002-2662-8053 (2020) Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom. PLOS ONE, 15 (01). e0227535-.

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Frau, Alessandra ORCID: 0000-0002-6885-1042, Ijaz, Umer Z, Slater, Rachael, Jonkers, Daisy, Penders, John, Campbell, Barry J ORCID: 0000-0002-7407-012X, Kenny, John G, Hall, Neil, Lenzi, Luca ORCID: 0000-0003-2697-691X, Burkitt, Michael D et al (show 3 more authors) , Pierik, Marieke, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Probert, Christopher SJ ORCID: 0000-0003-4550-0239 (2021) Inter-kingdom relationships in Crohn's disease explored using a multi-omics approach. GUT MICROBES, 13 (1). 1930871-.

Ellaby, N (2018) A Large Scale Metagenomic Analysis of the Faecal Microbiota in Preterm Infants Developing Necrotising Enterocolitis. PhD thesis, University of Liverpool.

Gardiner, Laura-Jayne, Bansept-Basler, Pauline, Olohan, Lisa, Joynson, Ryan, Brenchley, Rachel, Hall, Neil, O'Sullivan, Donal M and Hall, Anthony (2016) Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat. The Plant Journal, 87 (4). pp. 403-419.

Kelly, Jennifer Metagenomic and genomic analysis of the skin microbiota. Doctor of Philosophy thesis, University of Liverpool.

Goodhead, Ian, Noyes, HA ORCID: 0000-0002-0656-200X, Bailey, Wendi, MacLeod, A, Beament, T, Dowling, J, Chance, ML, Hall, Neil and Taylor, Mark (2008) Microsatellite genotyping of Trypanosoma brucei rhodesiense strains from Uganda that differ in pathology form distinct clusters that correlate with phenotype. In: British Society for Parasitology Spring Meeting, Newcastle, Newcastle Convention Centre. (Unpublished)

Hall, Neil (1997) Mutagenesis of nitrate reductase in aspergillus nidulans. PhD thesis, University of Liverpool.

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Lloyd, Katie A, Parsons, Bryony N ORCID: 0000-0003-3599-1089, Burkitt, Michael D, Moore, Andrew R, Papoutsopoulou, Stamatia ORCID: 0000-0001-6665-8508, Boyce, Malcolm, Duckworth, Carrie A ORCID: 0000-0001-9992-7540, Exarchou, Klaire, Howes, Nathan, Rainbow, Lucille ORCID: 0000-0003-0447-6885 et al (show 6 more authors) , Fang, Yongxiang ORCID: 0000-0002-4514-5292, Oxvig, Claus, Dodd, Steven, Varro, Andrea, Hall, Neil and Pritchard, D Mark ORCID: 0000-0001-7971-3561 (2020) Netazepide Inhibits Expression of Pappalysin 2 in Type 1 Gastric Neuroendocrine Tumors. CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY, 10 (1). pp. 113-132.

Darby, Alistair C, McInnes, Colin J, Kjaer, Karina Hansen, Wood, Ann R, Hughes, Margaret ORCID: 0000-0001-7251-6821, Martensen, Pia Moller, Radford, Alan D ORCID: 0000-0002-4590-1334, Hall, Neil and Chantrey, Julian ORCID: 0000-0002-4801-7034 (2014) Novel Host-Related Virulence Factors Are Encoded by Squirrelpox Virus, the Main Causative Agent of Epidemic Disease in Red Squirrels in the UK. PLOS ONE, 9 (7). e96439-.

Bengtsson, Rebecca J, Simpkin, Adam J, Pulford, Caisey V, Low, Ross, Rasko, David A, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Hall, Neil, Barry, Eileen M, Tennant, Sharon M and Baker, Kate S ORCID: 0000-0001-5850-1949 (2022) Pathogenomic analyses of Shigella isolates inform factors limiting shigellosis prevention and control across LMICs. NATURE MICROBIOLOGY, 7 (2). 251-+.

Liu, Lu-Ning ORCID: 0000-0002-8884-4819, Faulkner, Matthew ORCID: 0000-0002-0578-388X, Liu, Xuan, Huang, Fang, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Hall, Neil (2016) Revised Genome Sequence of the Purple Photosynthetic Bacterium <i>Blastochloris viridis</i>. GENOME ANNOUNCEMENTS, 4 (1). e01520-e01515.

D'Amore, Rosalinda ORCID: 0000-0002-2638-4466, Johnson, James ORCID: 0000-0002-8849-0993, Haldenby, Sam, Hall, Neil, Hughes, Margaret ORCID: 0000-0001-7251-6821, Joynson, Ryan, Kenny, John G, Patron, Nicola, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Hall, Anthony (2017) SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms. BIOTECHNIQUES, 63 (1). pp. 13-20.

Abbas, Ali Hadi ORCID: 0000-0003-2694-730X, Pereira, Sara Silva, D'Archivio, Simon, Wickstead, Bill, Morrison, Liam J, Hall, Neil, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Jackson, Andrew P ORCID: 0000-0002-5704-8596 (2018) The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense. Genome Biology and Evolution, 10 (9). pp. 2458-2473.

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Carr, Daniel F, Ayehunie, Seyoum, Davies, Andrea, Duckworth, Carrie A ORCID: 0000-0001-9992-7540, French, Stephanie, Hall, Neil, Hussain, Syed, Mellor, Howard R, Norris, Alan, Park, B Kevin ORCID: 0000-0001-8384-824X et al (show 11 more authors) , Penrose, Alexander, Pritchard, D Mark ORCID: 0000-0001-7971-3561, Probert, Chris S ORCID: 0000-0003-4550-0239, Ramaiah, Shashi, Sadler, Claire, Schmitt, Michael, Shaw, Alison, Sidaway, James E, Vries, Robert G, Wagoner, Matthew and Pirmohamed, Munir ORCID: 0000-0002-7534-7266 (2017) Towards better models and mechanistic biomarkers for drug-induced gastrointestinal injury. PHARMACOLOGY & THERAPEUTICS, 172. pp. 181-194.

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Perez-Sepulveda, Blanca ORCID: 0000-0002-2891-4010, Heavens, Darren, Pulford, Caisey ORCID: 0000-0003-2500-9119, Predeus, Alexander ORCID: 0000-0002-2750-1599, Low, Ross ORCID: 0000-0002-0956-2822, Webster, Hermione, Schudoma, Christian, Rowe, Will ORCID: 0000-0003-0384-4463, Lipscombe, James, Watkins, Chris et al (show 8 more authors) , Kumwenda, Benjamin, Shearer, Neil, Costigan, Karl, Baker, Kate, Feasey, Nicholas, Hinton, Jay ORCID: 0000-0003-2671-6026, Hall, Neil ORCID: 0000-0003-2808-0009 and The 10KSG consortium, (2020) An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes. Genome Biology.

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Perez-Sepulveda, Blanca M, Heavens, Darren, Pulford, Caisey V, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Low, Ross, Webster, Hermione, Dykes, Gregory F, Schudoma, Christian, Rowe, Will, Lipscombe, James et al (show 8 more authors) , Watkins, Chris, Kumwenda, Benjamin, Shearer, Neil, Costigan, Karl, Baker, Kate S ORCID: 0000-0001-5850-1949, Feasey, Nicholas A, Hinton, Jay CD ORCID: 0000-0003-2671-6026 and Hall, Neil (2021) An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes. GENOME BIOLOGY, 22 (1). 349-.

Gardiner, Laura-Jayne, Quinton-Tulloch, Mark, Olohan, Lisa, Price, Jonathan, Hall, Neil and Hall, Anthony (2015) A genome-wide survey of DNA methylation in hexaploid wheat. Genome Biology, 16 (1). 273-.

Stenhouse, George E ORCID: 0000-0002-9681-9242, Keddy, Karen H ORCID: 0000-0001-8640-2235, Bengtsson, Rebecca J, Hall, Neil, Smith, Anthony M ORCID: 0000-0002-3637-7155, Thomas, Juno ORCID: 0000-0002-8986-1135, Iturriza-Gómara, Miren and Baker, Kate S ORCID: 0000-0001-5850-1949 (2023) The genomic epidemiology of shigellosis in South Africa. Nature communications, 14 (1). 7715-.

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Jordan, Katherine W, Wang, Shichen, Lun, Yanni, Gardiner, Laura-Jayne, MacLachlan, Ron, Hucl, Pierre, Wiebe, Krysta, Wong, Debbie, Forrest, Kerrie L, Sharpe, Andrew G et al (show 15 more authors) , Sidebottom, Christine HD, Hall, Neil, Toomajian, Christopher, Close, Timothy, Dubcovsky, Jorge, Akhunova, Alina, Talbert, Luther, Bansal, Urmil K, Bariana, Harbans S, Hayden, Matthew J, Pozniak, Curtis, Jeddeloh, Jeffrey A, Hall, Anthony, Akhunov, Eduard and Consortium, IWGS (2015) A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes. Genome Biology, 16 (1). 48-.

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Wilson, Catherine N, Pulford, Caisey V, Akoko, James, Perez Sepulveda, Blanca ORCID: 0000-0002-2891-4010, Predeus, Alex V ORCID: 0000-0002-2750-1599, Bevington, Jessica, Duncan, Patricia, Hall, Neil, Wigley, Paul, Feasey, Nicholas et al (show 4 more authors) , Pinchbeck, Gina ORCID: 0000-0002-5671-8623, Hinton, Jay CD ORCID: 0000-0003-2671-6026, Gordon, Melita A ORCID: 0000-0002-0629-0884 and Fevre, Eric M ORCID: 0000-0001-8931-4986 (2020) <i>Salmonella</i> identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets. PLOS NEGLECTED TROPICAL DISEASES, 14 (11). e0008796-.

Olohan, Lisa, Gardiner, Laura-Jayne, Lucaci, Anita, Steuernagel, Burkhard, Wulff, Brande, Kenny, John, Hall, Neil and Hall, Anthony (2018) A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample. BMC GENOMICS, 19 (1). 250-.