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Sibbring, JS ORCID: 0000-0001-9178-6851 (2018) Application of Next-Generation Sequencing to Genomic Structural Variation Detection for Genetic Diagnosis of Rare Disorders. PhD thesis, University of Liverpool.

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Jayaraman, Siddharth, Harris, Claire, Paxton, Edith, Donachie, Anne-Marie, Vaikkinen, Heli, McCulloch, Richard, Hall, James PJ ORCID: 0000-0002-4896-4592, Kenny, John, Lenzi, Luca, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 et al (show 4 more authors) , Cobbold, Christina, Reeve, Richard, Michoel, Tom and Morrison, Liam (2019) Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections. PLoS Neglected Tropical Diseases.

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Jayaraman, Siddharth, Harris, Claire, Paxton, Edith, Donachie, Anne-Marie, Vaikkinen, Heli, McCulloch, Richard, Hall, James PJ ORCID: 0000-0002-4896-4592, Kenny, John, Lenzi, Luca ORCID: 0000-0003-2697-691X, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 et al (show 4 more authors) , Cobbold, Christina, Reeve, Richard, Michoel, Tom and Morrison, Liam (2019) Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections. PLoS Neglected Tropical Diseases, 13 (4). e0007262-.

Ofon, Elvis, Noyes, Harry ORCID: 0000-0002-0656-200X, Eyanga, Vincent Ebo'o, Njiokou, Flobert, Koffi, Mathurin, Fogue, Pythagore, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, MacLeod, Annette, Matovu, Enock and Simo, Gustave (2019) Association between IL1 gene polymorphism and human African trypanosomiasis in populations of sleeping sickness foci of southern Cameroon. PLOS NEGLECTED TROPICAL DISEASES, 13 (3). e0007283-.

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Kabore, Justin Windingoudi, Ilboudo, Hamidou, Noyes, Harry ORCID: 0000-0002-0656-200X, Camara, Oumou, Kabore, Jacques, Camara, Mamadou, Koffi, Mathurin, Lejon, Veerle, Jamonneau, Vincent, MacLeod, Annette et al (show 6 more authors) , Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Marie, Adrien, Belem, Gaston, Matovu, Enock, Bucheton, Bruno and Sidibe, Issa (2017) Candidate gene polymorphisms study between human African trypanosomiasis clinical phenotypes in Guinea. PLOS NEGLECTED TROPICAL DISEASES, 11 (8). e0005833-.

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Ahouty, Bernardin, Koffi, Mathurin, Ilboudo, Hamidou, Simo, Gustave, Matovu, Enock, Mulindwa, Julius, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Bucheton, Bruno, Sidibe, Issa, Jamonneau, Vincent et al (show 3 more authors) , MacLeod, Annette, Noyes, Harry ORCID: 0000-0002-0656-200X and N'Guetta, Simon-Pierre (2017) Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Cote d'Ivoire. PLOS NEGLECTED TROPICAL DISEASES, 11 (10). e0005992-.

Alshehri, EA (2019) Comparative genomic analysis of Neospora caninum and Toxoplasma gondii. Unspecified thesis, University of Liverpool.

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Nyangiri, Oscar A, Noyes, Harry ORCID: 0000-0002-0656-200X, Mulindwa, Julius, Ilboudo, Hamidou, Kabore, Justin Windingoudi, Ahouty, Bernardin, Koffi, Mathurin, Asina, Olivier Fataki, Mumba, Dieudonne, Ofon, Elvis et al (show 14 more authors) , Simo, Gustave, Kimuda, Magambo Phillip, Enyaru, John, Alibu, Vincent Pius, Kamoto, Kelita, Chisi, John, Simuunza, Martin, Camara, Mamadou, Sidibe, Issa, MacLeod, Annette, Bucheton, Bruno, Hall, Neil, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Matovu, Enock (2020) Copy number variation in human genomes from three major ethno-linguistic groups in Africa. BMC GENOMICS, 21 (1). 289-.

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Meyer, Vera ORCID: 0000-0002-2298-2258, Andersen, Mikael R ORCID: 0000-0003-4794-6808, Brakhage, Axel A, Braus, Gerhard H, Caddick, Mark X, Cairns, Timothy C ORCID: 0000-0001-7106-224X, de Vries, Ronald P ORCID: 0000-0002-4363-1123, Haarmann, Thomas ORCID: 0000-0001-6033-8140, Hansen, Kim, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 et al (show 5 more authors) , Krappmann, Sven ORCID: 0000-0002-8299-7777, Mortensen, Uffe H, Peñalva, Miguel A ORCID: 0000-0002-3102-2806, Ram, Arthur FJ and Head, Ritchie M (2016) Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper. Fungal biology and biotechnology, 3 (1). 6-.

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Aurrecoechea, Cristina, Barreto, Ana, Basenko, Evelina Y ORCID: 0000-0001-8611-5447, Brestelli, John, Brunk, Brian P, Cade, Shon, Crouch, Kathryn, Doherty, Ryan, Falke, Dave, Fischer, Steve et al (show 20 more authors) , Gajria, Bindu, Harb, Omar S, Heiges, Mark, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Hu, Sufen, Iodice, John, Kissinger, Jessica C, Lawrence, Cris, Li, Wei, Pinney, Deborah F, Pulman, Jane A, Roos, David S, Shanmugasundram, Achchuthan ORCID: 0000-0003-2349-6929, Silva-Franco, Fatima ORCID: 0000-0002-2900-027X, Steinbiss, Sascha, Stoeckert, Christian J Jr, Spruill, Drew, Wang, Haiming, Warrenfeltz, Susanne and Zheng, Jie (2017) EuPathDB: the eukaryotic pathogen genomics database resource. NUCLEIC ACIDS RESEARCH, 45 (D1). D581-D591.

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Mulindwa, Julius, Noyes, Harry ORCID: 0000-0002-0656-200X, Ilboudo, Hamidou, Nyangiri, Oscar, Koffi, Mathurin, Mumba, Dieudonne, Simo, Gustave, Enyaru, John, Chisi, John, Simuunza, Martin et al (show 8 more authors) , Alibu, Pius, Jamoneau, Vincent, Macleod, Annette, Bucheton, Bruno, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Sidibe, Issa, Matovu, Enock and for the TrypanoGEN Research Group, as members of The H3Africa Co, (2017) Evidence of population specific selection inferred from 289 genome sequences of Nilo-Saharan and Niger-Congo linguistic groups in Africa.

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Basenko, Evelina Y ORCID: 0000-0001-8611-5447, Pulman, Jane A, Shanmugasundram, Achchuthan ORCID: 0000-0003-2349-6929, Harb, Omar S, Crouch, Kathryn, Starns, David ORCID: 0000-0001-6583-9067, Warrenfeltz, Susanne, Aurrecoechea, Cristina, Stoeckert, Christian J Jr, Kissinger, Jessica C et al (show 2 more authors) , Roos, David S and Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 (2018) FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes. JOURNAL OF FUNGI, 4 (1). E39-.

Johnson, James R ORCID: 0000-0002-8849-0993, D'Amore, Rosalinda ORCID: 0000-0002-2638-4466, Thain, Simon C ORCID: 0000-0001-8041-4112, Craig, Thomas ORCID: 0000-0001-7029-310X, Mccue, Hannah V, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Hall, Neil and Hall, Anthony JW (2016) GeneMill: A 21st century platform for innovation. BIOCHEMICAL SOCIETY TRANSACTIONS, 44 (3). pp. 681-683.

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Warren, Wesley C, Akopyants, Natalia S, Dobson, Deborah E, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Lye, Lon-Fye, Myler, Peter J, Ramasamy, Gowthaman, Shanmugasundram, Achchuthan ORCID: 0000-0003-2349-6929, Silva-Franco, Fatima, Steinbiss, Sascha et al (show 3 more authors) , Tomlinson, Chad, Wilson, Richard K and Beverley, Stephen M (2021) Genome Assemblies across the Diverse Evolutionary Spectrum of Leishmania Protozoan Parasites. Microbiology Resource Announcements, 10 (35). e0054521-.

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Mulindwa, Julius, Noyes, Harry ORCID: 0000-0002-0656-200X, Ilboudo, Hamidou, Pagani, Luca, Nyangiri, Oscar, Kimuda, Magambo Phillip, Ahouty, Bernardin, Asina, Olivier Fataki, Ofon, Elvis, Kamoto, Kelita et al (show 17 more authors) , Kabore, Justin Windingoudi, Koffi, Mathurin, Ngoyi, Dieudonne Mumba, Simo, Gustave, Chisi, John, Sidibe, Issa, Enyaru, John, Simuunza, Martin, Alibu, Pius, Jamonneau, Vincent, Camara, Mamadou, Tait, Andy, Hall, Neil, Bucheton, Bruno, MacLeod, Annette, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Matovu, Enock (2020) High Levels of Genetic Diversity within Nilo-Saharan Populations: Implications for Human Adaptation. AMERICAN JOURNAL OF HUMAN GENETICS, 107 (3). pp. 473-486.

Leckenby, AE (2018) Improved genomic assembly and genomic analyses of Entamoeba histolytica. Doctor of Philosophy thesis, University of Liverpool.

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Haldenby, Sam, Bronowski, Christina ORCID: 0000-0001-8089-4021, Nelson, Charlotte, Kenny, John, Martinez-Rodriguez, Carmen, Chaudhuri, Roy, Williams, Nicola J, Forbes, Ken, Strachan, Norval J, Pulman, Jane et al (show 8 more authors) , Winstanley, Ian N, Corless, Caroline E, Humphrey, Tom J, Bolton, Frederick J, O'Brien, Sarah J ORCID: 0000-0003-2896-8999, Hall, Neil, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Winstanley, Craig ORCID: 0000-0002-2662-8053 (2020) Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom. PLOS ONE, 15 (01). e0227535-.

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Ilboudo, Hamidou, Noyes, Harry ORCID: 0000-0002-0656-200X, Mulindwa, Julius, Kimuda, Magambo Phillip, Koffi, Mathurin, Kabore, Justin Windingoudi, Ahouty, Bernadin, Ngoyi, Dieudonne Mumba, Fataki, Olivier, Simo, Gustave et al (show 14 more authors) , Ofon, Elvis, Enyaru, John, Chisi, John, Kamoto, Kelita, Simuunza, Martin, Alibu, Vincent P, Lejon, Veerle, Jamonneau, Vincent, Macleod, Annette, Camara, Mamadou, Bucheton, Bruno, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Sidibe, Issa and Matovu, Enock (2017) Introducing the TrypanoGEN biobank: A valuable resource for the elimination of human African trypanosomiasis. PLOS NEGLECTED TROPICAL DISEASES, 11 (6). e0005438-.

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Aljabr, Waleed ORCID: 0000-0002-9385-2776, Touzelet, Olivier, Pollakis, Georgios ORCID: 0000-0002-9659-5461, Wu, Weining, Munday, Diane C, Hughes, Margaret ORCID: 0000-0001-7251-6821, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Kenny, John, Fearns, Rachel, Barr, John N et al (show 2 more authors) , Matthews, David A and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2016) Investigating the Influence of Ribavirin on Human Respiratory Syncytial Virus RNA Synthesis by Using a High-Resolution Transcriptome Sequencing Approach. JOURNAL OF VIROLOGY, 90 (10). pp. 4876-4888.

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Kimuda, Magambo Phillip, Noyes, Harry ORCID: 0000-0002-0656-200X, Mulindwa, Julius, Enyaru, John, Alibu, Vincent Pius, Sidibe, Issa, Ngoyi, Dieuodonne Mumba, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, MacLeod, Annette, Bishop, Ozlem Tastan et al (show 1 more authors) and Matovu, Enock (2018) No evidence for association between APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations. PLOS NEGLECTED TROPICAL DISEASES, 12 (2). e0006300-.

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Kimuda, Magambo Phillip ORCID: 0000-0003-3911-8359, Noyes, Harry, Mulindwa, Julius, Enyaru, John, Alibu, Vincent Pius, Sidibe, Issa, Mumba, Dieuodonne, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, MacLeod, Annette, Bishop, Özlem Tastan et al (show 2 more authors) , Matovu, Enock and Matovu, Enock (2017) No evidence for association with APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations.

D'Amore, Rosalinda ORCID: 0000-0002-2638-4466, Johnson, James ORCID: 0000-0002-8849-0993, Haldenby, Sam, Hall, Neil, Hughes, Margaret ORCID: 0000-0001-7251-6821, Joynson, Ryan, Kenny, John G, Patron, Nicola, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479 and Hall, Anthony (2017) SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms. BIOTECHNIQUES, 63 (1). pp. 13-20.

Abbas, Ali Hadi ORCID: 0000-0003-2694-730X, Pereira, Sara Silva, D'Archivio, Simon, Wickstead, Bill, Morrison, Liam J, Hall, Neil, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Jackson, Andrew P ORCID: 0000-0002-5704-8596 (2018) The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense. Genome Biology and Evolution, 10 (9). pp. 2458-2473.

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Thornton, Sophie, Coupland, Sarah E ORCID: 0000-0002-1464-2069, Olohan, Lisa, Sibbring, Julie S ORCID: 0000-0001-9178-6851, Kenny, John G, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Liu, Xuan, Haldenby, Sam, Heimann, Heinrich, Hussain, Rumana ORCID: 0000-0001-8208-5009 et al (show 3 more authors) , Kipling, Natalie, Taktak, Azzam and Kalirai, Helen ORCID: 0000-0002-4440-2576 (2020) Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma. CANCERS, 12 (4). E1039-.

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Shameer, Sanu, Logan-Klumpler, Flora J, Vinson, Florence, Cottret, Ludovic, Merlet, Benjamin, Achcar, Fiona, Boshart, Michael, Berriman, Matthew, Breitling, Rainer, Bringaud, Fredrric et al (show 31 more authors) , Butikofer, Peter, Cattanach, Amy M, Bannerman-Chukualim, Bridget, Creek, Darren J, Crouch, Kathryn, de Koning, Harry P, Denise, Hubert, Ebikeme, Charles, Fairlamb, Alan H, Ferguson, Michael AJ, Ginger, Michael L, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Kerkhoven, Eduard J, Maeser, Pascal, Michels, Paul AM, Nayak, Archana, Nes, David W, Nolan, Derek P, Olsen, Christian, Silva-Franco, Fatima ORCID: 0000-0002-2900-027X, Smith, Terry K, Taylor, Martin C, Tielens, Aloysius GM, Urbaniak, Michael D, van Hellemond, Jaap J, Vincent, Isabel M, Wilkinson, Shane R, Wyllie, Susan, Opperdoes, Fred R, Barrett, Michael P and Jourdan, Fabien (2015) TrypanoCyc: a community-led biochemical pathways database for <i>Trypanosoma brucei</i>. NUCLEIC ACIDS RESEARCH, 43 (D1). D637-D644.

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Amos, Beatrice, Aurrecoechea, Cristina, Barba, Matthieu, Barreto, Ana, Basenko, Evelina Y ORCID: 0000-0001-8611-5447, Bazant, Wojciech, Belnap, Robert, Blevins, Ann S, Bohme, Ulrike, Brestelli, John et al (show 56 more authors) , Brunk, Brian P, Caddick, Mark, Callan, Danielle, Campbell, Lahcen, Christensen, Mikkel B, Christophides, George K, Crouch, Kathryn, Davis, Kristina, DeBarry, Jeremy, Doherty, Ryan, Duan, Yikun, Dunn, Michael, Falke, Dave, Fisher, Steve, Flicek, Paul, Fox, Brett, Gajria, Bindu, Giraldo-Calderon, Gloria I, Harb, Omar S, Harper, Elizabeth, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Hickman, Mark J, Howington, Connor, Hu, Sufen, Humphrey, Jay, Iodice, John, Jones, Andrew ORCID: 0000-0001-6118-9327, Judkins, John, Kelly, Sarah A, Kissinger, Jessica C, Kwon, Dae Kun, Lamoureux, Kristopher, Lawson, Daniel, Li, Wei, Lies, Kallie, Lodha, Disha, Long, Jamie, MacCallum, Robert M, Maslen, Gareth, McDowell, Mary Ann, Nabrzyski, Jaroslaw, Roos, David S, Rund, Samuel SC, Schulman, Stephanie Wever, Shanmugasundram, Achchuthan ORCID: 0000-0003-2349-6929, Sitnik, Vasily, Spruill, Drew, Starns, David ORCID: 0000-0001-6583-9067, Stoeckert, Christian J, Tomko, Sheena Shah, Wang, Haiming, Warrenfeltz, Susanne, Wieck, Robert, Wilkinson, Paul A ORCID: 0000-0002-8836-5439, Xu, Lin and Zheng, Jie (2022) VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. NUCLEIC ACIDS RESEARCH, 50 (D1). D898-D911.

Steinbiss, Sascha, Silva-Franco, Fatima ORCID: 0000-0002-2900-027X, Brunk, Brian, Foth, Bernardo, Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, Berriman, Matthew and Otto, Thomas D (2016) <i>Companion</i>: a web server for annotation and analysis of parasite genomes. NUCLEIC ACIDS RESEARCH, 44 (W1). W29-W34.

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Ofon, Elvis, Noyes, Harry ORCID: 0000-0002-0656-200X, Mulindwa, Julius, Ilboudo, Hamidou, Simuunza, Martin, Eboo, Vincent, Njiokou, Flobert, Koffi, Mathurin, Bucheton, Bruno, Fogue, Pythagore et al (show 3 more authors) , Hertz-Fowler, Christiane ORCID: 0000-0002-0729-6479, MacLeod, Annette and Simo, Gustave (2017) A polymorphism in the haptoglobin, haptoglobin related protein locus is associated with risk of human sleeping sickness within Cameroonian populations. PLOS NEGLECTED TROPICAL DISEASES, 11 (10). e0005979-.