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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Hahn, Anne M, Petrone, Mary E, Zhou, Shuntai, Ferguson, David, Breban, Mallery I, Pham, Kien, Pena-Hernandez, Mario A, Castaldi, Christopher, Hill, Verity et al (show 4 more authors) , Schulz, Wade, Swanstrom, Ronald I, Roberts, Scott C and Grubaugh, Nathan D (2023) Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection. CELL REPORTS MEDICINE, 4 (2). 100943-.

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Nicholls, Samuel M, Poplawski, Radoslaw, Bull, Matthew J, Underwood, Anthony, Chapman, Michael, Abu-Dahab, Khalil, Taylor, Ben, Colquhoun, Rachel M, Rowe, Will PM, Jackson, Ben et al (show 13 more authors) , Hill, Verity, O’Toole, Áine, Rey, Sara, Southgate, Joel, Amato, Roberto, Livett, Rich, Gonçalves, Sónia, Harrison, Ewan M, Peacock, Sharon J, Aanensen, David M, Rambaut, Andrew, Connor, Thomas R and Loman, Nicholas J (2021) CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance. Genome Biology, 22 (1). 196-.

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McCrone, John T ORCID: 0000-0002-9846-8917, Hill, Verity, Bajaj, Sumali, Pena, Rosario Evans, Lambert, Ben C ORCID: 0000-0003-4274-4158, Inward, Rhys ORCID: 0000-0003-0016-661X, Bhatt, Samir ORCID: 0000-0002-0891-4611, Volz, Erik ORCID: 0000-0001-6268-8937, Ruis, Christopher ORCID: 0000-0003-0977-5534, Dellicour, Simon et al (show 32 more authors) , Baele, Guy ORCID: 0000-0002-1915-7732, Zarebski, Alexander E, Sadilek, Adam ORCID: 0000-0003-0784-7098, Wu, Neo, Schneider, Aaron, Ji, Xiang ORCID: 0000-0002-7243-0865, Raghwani, Jayna, Jackson, Ben ORCID: 0000-0002-9981-0649, Colquhoun, Rachel ORCID: 0000-0002-5577-9897, O'Toole, Áine, Peacock, Thomas P ORCID: 0000-0001-7077-2928, Twohig, Kate, Thelwall, Simon ORCID: 0000-0002-0434-2724, Dabrera, Gavin, Myers, Richard, COVID-19 Genomics UK (COG-UK) Consortium, , Faria, Nuno R ORCID: 0000-0002-9747-8822, Faria, Nuno R ORCID: 0000-0001-8839-2798, Huber, Carmen, Bogoch, Isaac I, Khan, Kamran, du Plessis, Louis ORCID: 0000-0003-0352-6289, Barrett, Jeffrey C, Aanensen, David M, Barclay, Wendy S ORCID: 0000-0002-3948-0895, Chand, Meera, Connor, Thomas ORCID: 0000-0003-2394-6504, Loman, Nicholas J, Suchard, Marc A ORCID: 0000-0001-9818-479X, Pybus, Oliver G ORCID: 0000-0002-8797-2667, Rambaut, Andrew ORCID: 0000-0003-4337-3707 and Kraemer, Moritz UG ORCID: 0000-0001-8838-7147 (2022) Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature, 610 (7930). pp. 154-160.

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du Plessis, Louis ORCID: 0000-0003-0352-6289, McCrone, John T ORCID: 0000-0002-9846-8917, Zarebski, Alexander E ORCID: 0000-0003-1824-7653, Hill, Verity ORCID: 0000-0002-3509-8146, Ruis, Christopher ORCID: 0000-0003-0977-5534, Gutierrez, Bernardo ORCID: 0000-0002-9220-2739, Raghwani, Jayna ORCID: 0000-0001-8538-4995, Ashworth, Jordan ORCID: 0000-0003-1740-7475, Colquhoun, Rachel ORCID: 0000-0002-5577-9897, Connor, Thomas R ORCID: 0000-0003-2394-6504 et al (show 17 more authors) , Faria, Nuno R ORCID: 0000-0001-8839-2798, Jackson, Ben ORCID: 0000-0002-9981-0649, Loman, Nicholas J ORCID: 0000-0002-9843-8988, O'Toole, Áine ORCID: 0000-0001-8083-474X, Nicholls, Samuel M ORCID: 0000-0003-4081-065X, Parag, Kris V ORCID: 0000-0002-7806-3605, Scher, Emily ORCID: 0000-0002-5401-5879, Vasylyeva, Tetyana I, Volz, Erik M ORCID: 0000-0001-6268-8937, Watts, Alexander ORCID: 0000-0002-2675-3460, Bogoch, Isaac I, Khan, Kamran ORCID: 0000-0003-4367-960X, COVID-19 Genomics UK (COG-UK) Consortium, , Aanensen, David M ORCID: 0000-0001-6688-0854, Kraemer, Moritz UG ORCID: 0000-0001-8838-7147, Rambaut, Andrew ORCID: 0000-0003-4337-3707 and Pybus, Oliver G ORCID: 0000-0002-8797-2667 (2021) Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science (New York, N.Y.), 371 (6530). pp. 708-712.

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Volz, Erik, Hill, Verity, McCrone, John T, Price, Anna, Jorgensen, David, O'Toole, Áine, Southgate, Joel, Johnson, Robert, Jackson, Ben, Nascimento, Fabricia F et al (show 22 more authors) , Rey, Sara M, Nicholls, Samuel M, Colquhoun, Rachel M, da Silva Filipe, Ana, Shepherd, James, Pascall, David J ORCID: 0000-0002-7543-0860, Shah, Rajiv, Jesudason, Natasha, Li, Kathy, Jarrett, Ruth ORCID: 0000-0003-0390-3478, Pacchiarini, Nicole, Bull, Matthew, Geidelberg, Lily, Siveroni, Igor, COG-UK Consortium, , Goodfellow, Ian, Loman, Nicholas J, Pybus, Oliver G, Robertson, David L, Thomson, Emma C, Rambaut, Andrew and Connor, Thomas R (2021) Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity. Cell, 184 (1). 64-75.e11.

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Jackson, Ben, Boni, Maciej F, Bull, Matthew J, Colleran, Amy, Colquhoun, Rachel M, Darby, Alistair C ORCID: 0000-0002-3786-6209, Haldenby, Sam, Hill, Verity, Lucaci, Anita, McCrone, John T et al (show 14 more authors) , Nicholls, Samuel M, O’Toole, Áine, Pacchiarini, Nicole, Poplawski, Radoslaw, Scher, Emily, Todd, Flora ORCID: 0000-0001-5293-6394, Webster, Hermione J, Whitehead, Mark ORCID: 0000-0002-0452-1511, Wierzbicki, Claudia ORCID: 0000-0001-7266-2597, Loman, Nicholas J, Connor, Thomas R, Robertson, David L, Pybus, Oliver G and Rambaut, Andrew (2021) Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic. Cell, 184 (20). 5179-+.

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Aggarwal, Dinesh, Warne, Ben, Jahun, Aminu S, Hamilton, William L, Fieldman, Thomas, du Plessis, Louis, Hill, Verity, Blane, Beth, Watkins, Emmeline, Wright, Elizabeth et al (show 33 more authors) , Hall, Grant, Ludden, Catherine, Myers, Richard, Hosmillo, Myra, Chaudhry, Yasmin, Pinckert, Malte L, Georgana, Iliana, Izuagbe, Rhys, Leek, Danielle, Nsonwu, Olisaeloka, Hughes, Gareth J, Packer, Simon, Page, Andrew J, Metaxaki, Marina, Fuller, Stewart, Weale, Gillian, Holgate, Jon, Brown, Christopher A, Howes, Rob, McFarlane, Duncan, Dougan, Gordon, Pybus, Oliver G, De Angelis, Daniela, Maxwell, Patrick H, Peacock, Sharon J, Weekes, Michael P, Illingworth, Chris, Harrison, Ewan M, Matheson, Nicholas J, Goodfellow, Ian G, Ctr, Cambridge Covid-19 Testing, COVID-, Univ Cambridge Asymptomatic and Consor, COVID-19 Genomics UKCOG-UK (2022) Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission. NATURE COMMUNICATIONS, 13 (1). 751-.

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Nickbakhsh, Sema, Hughes, Joseph, Christofidis, Nicolaos, Griffiths, Emily, Shaaban, Sharif, Enright, Jessica, Smollett, Katherine, Nomikou, Kyriaki, Palmalux, Natasha, Tong, Lily et al (show 645 more authors) , Carmichael, Stephen, Sreenu, Vattipally B, Orton, Richard, Goldstein, Emily J, Tomb, Rachael M, Robson, Samuel C, Connor, Thomas R, Loman, Nicholas J, Golubchik, Tanya, Nunez, Rocio T Martinez, Bonsall, David, Rambaut, Andrew, Snell, Luke B, Livett, Rich, Ludden, Catherine, Corden, Sally, Nastouli, Eleni, Nebbia, Gaia, Johnston, Ian, Lythgoe, Katrina, Torok, M Estee, Goodfellow, Ian G, Prieto, Jacqui A, Saeed, Kordo, Jackson, David K, Houlihan, Catherine, Frampton, Dan, Hamilton, William L, Witney, Adam A, Bucca, Giselda, Pope, Cassie F, Moore, Catherine, Thomson, Emma C, Harrison, Ewan M, Smith, Colin P, Rogan, Fiona, Beckwith, Shaun M, Murray, Abigail, Singleton, Dawn, Eastick, Kirstine, Sheridan, Liz A, Randell, Paul, Jackson, Leigh M, Ariani, Cristina V, Gonçalves, Sónia, Fairley, Derek J, Loose, Matthew W, Watkins, Joanne, Moses, Samuel, Nicholls, Sam, Bull, Matthew, Amato, Roberto, Smith, Darren L, Aanensen, David M, Barrett, Jeffrey C, Aggarwal, Dinesh, Shepherd, James G, Curran, Martin D, Parmar, Surendra, Parker, Matthew D, Williams, Catryn, Glaysher, Sharon, Underwood, Anthony P, Bashton, Matthew, Pacchiarini, Nicole, Loveson, Katie F, Byott, Matthew, Carabelli, Alessandro M, Templeton, Kate E, de Silva, Thushan I, Wang, Dennis, Langford, Cordelia F, Sillitoe, John, Gunson, Rory N, Cottrell, Simon, O’Grady, Justin, Kwiatkowski, Dominic, Lillie, Patrick J, Cortes, Nicholas, Moore, Nathan, Thomas, Claire, Burns, Phillipa J, Mahungu, Tabitha W, Liggett, Steven, Beckett, Angela H, Holden, Matthew TG, Levett, Lisa J, Osman, Husam, Hassan-Ibrahim, Mohammed O, Simpson, David A, Chand, Mrera, Gupta, Ravi K, Darby, Alistair C ORCID: 0000-0002-3786-6209, Paterson, Steve ORCID: 0000-0002-1307-2981, Pybus, Oliver G, Volz, Erik M, de Angelis, Daniela, Robertson, David L, Page, Andrew J, Martincorena, Inigo, Aigrain, Louise, Bassett, Andrew R, Wong, Nick, Taha, Yusri, Erkiert, Michelle J, Chapman, Michael H Spencer, Dewar, Rebecca, McHugh, Martin P, Mookerjee, Siddharth, Aplin, Stephen, Harvey, Matthew, Sass, Thea, Umpleby, Helen, Wheeler, Helen, McKenna, James P, Warne, Ben, Taylor, Joshua F, Chaudhry, Yasmin, Izuagbe, Rhys, Jahun, Aminu S, Young, Gregory R, McMurray, Claire, McCann, Clare M, Nelson, Andrew, Elliott, Scott, Lowe, Hannah, Price, Anna, Crown, Matthew R, Rey, Sara, Roy, Sunando, Temperton, Ben, Shaaban, Sharif, Hesketh, Andrew R, Laing, Kenneth G, Monahan, Irene M, Heaney, Judith, Pelosi, Emanuela, Silviera, Siona, Wilson-Davies, Eleri, Fryer, Helen, Adams, Helen, du Plessis, Louis, Johnson, Rob, Harvey, William T, Hughes, Joseph, Orton, Richard J, Spurgin, Lewis G, Bourgeois, Yann, Ruis, Chris, O’Toole, Áine, Gourtovaia, Marina, Sanderson, Theo, Fraser, Christophe, Edgeworth, Jonathan, Breuer, Judith, Michell, Stephen L, Todd, John A, John, Michaela, Buck, David, Gajee, Kavitha, Kay, Gemma L, Peacock, Sharon J, Heyburn, David, Kitchman, Katie, McNally, Alan, Pritchard, David T, Dervisevic, Samir, Muir, Peter, Robinson, Esther, Vipond, Barry B, Ramadan, Newara A, Jeanes, Christopher, Weldon, Danni, Catalan, Jana, Jones, Neil, da Silva Filipe, Ana, Williams, Chris, Fuchs, Marc, Miskelly, Julia, Jeffries, Aaron R, Oliver, Karen, Park, Naomi R, Ash, Amy, Koshy, Cherian, Barrow, Magdalena, Buchan, Sarah L, Mantzouratou, Anna, Clark, Gemma, Holmes, Christopher W, Campbell, Sharon, Davis, Thomas, Tan, Ngee Keong, Brown, Julianne R, Harris, Kathryn A, Kidd, Stephen P, Grant, Paul R, Xu-McCrae, Li, Cox, Alison, Madona, Pinglawathee, Pond, Marcus, Randell, Paul A, Withell, Karen T, Williams, Cheryl, Graham, Clive, Denton-Smith, Rebecca, Swindells, Emma, Turnbull, Robyn, Sloan, Tim J, Bosworth, Andrew, Hutchings, Stephanie, Pymont, Hannah M, Casey, Anna, Ratcliffe, Liz, Jones, Christopher R, Knight, Bridget A, Haque, Tanzina, Hart, Jennifer, Irish-Tavares, Dianne, Witele, Eric, Mower, Craig, Watson, Louisa K, Collins, Jennifer, Eltringham, Gary, Crudgington, Dorian, Macklin, Ben, Iturriza-Gomara, Miren, Lucaci, Anita O, McClure, Patrick C, Carlile, Matthew, Holmes, Nadine, Moore, Christopher, Storey, Nathaniel, Rooke, Stefan, Yebra, Gonzalo, Craine, Noel, Perry, Malorie, Alikhan, Nabil-Fareed, Bridgett, Stephen, Cook, Kate F, Fearn, Christopher, Goudarzi, Salman, Lyons, Ronan A, Williams, Thomas, Haldenby, Sam T, Durham, Jillian, Leonard, Steven, Davies, Robert M, Batra, Rahul, Blane, Beth, Spyer, Moira J, Smith, Perminder, Yavus, Mehmet, Williams, Rachel J, Mahanama, Adhyana IK, Samaraweera, Buddhini, Girgis, Sophia T, Hansford, Samantha E, Green, Angie, Beaver, Charlotte, Bellis, Katherine L, Dorman, Matthew J, Kay, Sally, Prestwood, Liam, Rajatileka, Shavanthi, Quick, Joshua, Poplawski, Radoslaw, Reynolds, Nicola, Mack, Andrew, Morriss, Arthur, Whalley, Thomas, Patel, Bindi, Georgana, Iliana, Hosmillo, Myra, Pinckert, Malte L, Stockton, Joanne, Henderson, John H, Hollis, Amy, Stanley, William, Yew, Wen C, Myers, Richard, Thornton, Alicia, Adams, Alexander, Annett, Tara, Asad, Hibo, Birchley, Alec, Coombes, Jason, Evans, Johnathan M, Fina, Laia, Gatica-Wilcox, Bree, Gilbert, Lauren, Graham, Lee, Hey, Jessica, Hilvers, Ember, Jones, Sophie, Jones, Hannah, Kumziene-Summerhayes, Sara, McKerr, Caoimhe, Powell, Jessica, Pugh, Georgia, Taylor, Sarah, Trotter, Alexander J, Williams, Charlotte A, Kermack, Leanne M, Foulkes, Benjamin H, Gallis, Marta, Hornsby, Hailey R, Louka, Stavroula F, Pohare, Manoj, Wolverson, Paige, Zhang, Peijun, MacIntyre-Cockett, George, Trebes, Amy, Moll, Robin J, Ferguson, Lynne, Goldstein, Emily J, Maclean, Alasdair, Tomb, Rachael, Starinskij, Igor, Thomson, Laura, Southgate, Joel, Kraemer, Moritz UG, Raghwani, Jayna, Zarebski, Alex E, Boyd, Olivia, Geidelberg, Lily, Illingworth, Chris J, Jackson, Chris, Pascall, David, Vattipally, Sreenu, Freeman, Timothy M, Hsu, Sharon N, Lindsey, Benjamin B, James, Keith, Lewis, Kevin, Tonkin-Hill, Gerry, Tovar-Corona, Jaime M, Cox, MacGregor, Abudahab, Khalil, Menegazzo, Mirko, Taylor, Ben EW, Yeats, Corin A, Mukaddas, Afrida, Wright, Derek W, de Oliveira Martins, Leonardo, Colquhoun, Rachel, Hill, Verity, Jackson, Ben, McCrone, JT, Medd, Nathan, Scher, Emily, Keatley, Jon-Paul, Curran, Tanya, Morgan, Sian, Maxwell, Patrick, Smith, Ken, Eldirdiri, Sahar, Kenyon, Anita, Holmes, Alison H, Price, James R, Wyatt, Tim, Mather, Alison E, SkvortsovHartley, Timofey John A, Guest, Martyn, Kitchen, Christine, Merrick, Ian, Munn, Robert, Bertolusso, Beatrice, Lynch, Jessica, Vernet, Gabrielle, Kirk, Stuart, Wastnedge, Elizabeth, Stanley, Rachael, Idle, Giles, Bradley, Declan T, Poyner, Jennifer, Mori, Matilde, Jones, Owen, Wright, Victoria, Brooks, Ellena, Churcher, Carol M, Fragakis, Mireille, Galai, Katerina, Jermy, Andrew, Judges, Sarah, McManus, Georgina M, Smith, Kim S, Westwick, Elaine, Attwood, Stephen W, Bolt, Frances, Davies, Alisha, De Lacy, Elen, Downing, Fatima, Edwards, Sue, Meadows, Lizzie, Jeremiah, Sarah, Smith, Nikki, Foulser, Luke, Charalampous, Themoula, Patel, Amita, Berry, Louise, Boswell, Tim, Fleming, Vicki M, Howson-Wells, Hannah C, Joseph, Amelia, Khakh, Manjinder, Lister, Michelle M, Bird, Paul W, Fallon, Karlie, Helmer, Thomas, McMurray, Claire L, Odedra, Mina, Shaw, Jessica, Tang, Julian W, Willford, Nicholas J, Blakey, Victoria, Raviprakash, Veena, Sheriff, Nicola, Williams, Lesley-Anne, Feltwell, Theresa, Bedford, Luke, Cargill, James S, Hughes, Warwick, Moore, Jonathan, Stonehouse, Susanne, Atkinson, Laura, Lee, Jack CD, Shah, Divya, Alcolea-Medina, Adela, Ohemeng-Kumi, Natasha, Ramble, John, Sehmi, Jasveen, Williams, Rebecca, Chatterton, Wendy, Pusok, Monika, Everson, William, Castigador, Anibolina, Macnaughton, Emily, El Bouzidi, Kate, Lampejo, Temi, Sudhanva, Malur, Breen, Cassie, Sluga, Graciela, Ahmad, Shazaad SY, George, Ryan P, Machin, Nicholas W, Binns, Debbie, James, Victoria, Blacow, Rachel, Coupland, Lindsay, Smith, Louise, Barton, Edward, Padgett, Debra, Scott, Garren, Cross, Aidan, Mirfenderesky, Mariyam, Greenaway, Jane, Cole, Kevin, Clarke, Phillip, Duckworth, Nichola, Walsh, Sarah, Bicknell, Kelly, Impey, Robert, Wyllie, Sarah, Hopes, Richard, Bishop, Chloe, Chalker, Vicki, Harrison, Ian, Gifford, Laura, Molnar, Zoltan, Auckland, Cressida, Evans, Cariad, Johnson, Kate, Partridge, David G, Raza, Mohammad, Baker, Paul, Bonner, Stephen, Essex, Sarah, Murray, Leanne J, Lawton, Andrew I, Burton-Fanning, Shirelle, Payne, Brendan AI, Waugh, Sheila, Gomes, Andrea N, Kimuli, Maimuna, Murray, Darren R, Ashfield, Paula, Dobie, Donald, Ashford, Fiona, Best, Angus, Crawford, Liam, Cumley, Nicola, Mayhew, Megan, Megram, Oliver, Mirza, Jeremy, Moles-Garcia, Emma, Percival, Benita, Driscoll, Megan, Ensell, Leah, Lowe, Helen L, Maftei, Laurentiu, Mondani, Matteo, Chaloner, Nicola J, Cogger, Benjamin J, Easton, Lisa J, Huckson, Hannah, Lewis, Jonathan, Lowdon, Sarah, Malone, Cassandra S, Munemo, Florence, Mutingwende, Manasa, Nicodemi, Roberto, Podplomyk, Olga, Somassa, Thomas, Beggs, Andrew, Richter, Alex, Cormie, Claire, Dias, Joana, Forrest, Sally, Higginson, Ellen E, Maes, Mailis, Young, Jamie, Davidson, Rose K, Jackson, Kathryn A, Turtle, Lance, Keeley, Alexander J, Ball, Jonathan, Byaruhanga, Timothy, Chappell, Joseph G, Dey, Jayasree, Hill, Jack D, Park, Emily J, Fanaie, Arezou, Hilson, Rachel A, Yaze, Geraldine, Lo, Stephanie, Afifi, Safiah, Beer, Robert, Maksimovic, Joshua, McCluggage, Kathryn, Spellman, Karla, Bresner, Catherine, Fuller, William, Marchbank, Angela, Workman, Trudy, Shelest, Ekaterina, Debebe, Johnny, Sang, Fei, Zamudio, Marina Escalera, Francois, Sarah, Gutierrez, Bernardo, Vasylyeva, Tetyana I, Flaviani, Flavia, Ragonnet-Cronin, Manon, Smollett, Katherine L, Broos, Alice, Mair, Daniel, Nichols, Jenna, Nomikou, Kyriaki, Tong, Lily, Tsatsani, Ioulia, O’Brien, Sarah, Rushton, Steven, Sanderson, Roy, Perkins, Jon, Cotton, Seb, Gallagher, Abbie, Allara, Elias, Pearson, Clare, Bibby, David, Dabrera, Gavin, Ellaby, Nicholas, Gallagher, Eileen, Hubb, Jonathan, Lackenby, Angie, Lee, David, Manesis, Nikos, Mbisa, Tamyo, Platt, Steven, Twohig, Katherine A, Morgan, Mari, Aydin, Alp, Baker, David J, Foster-Nyarko, Ebenezer, Prosolek, Sophie J, Rudder, Steven, Baxter, Chris, Carvalho, Sílvia F, Lavin, Deborah, Mariappan, Arun, Radulescu, Clara, Singh, Aditi, Tang, Miao, Morcrette, Helen, Bayzid, Nadua, Cotic, Marius, Balcazar, Carlos E, Gallagher, Michael D, Maloney, Daniel, Stanton, Thomas D, Williamson, Kathleen A, Manley, Robin, Michelsen, Michelle L, Sambles, Christine M, Studholme, David J, Warwick-Dugdale, Joanna, Eccles, Richard, Gemmell, Matthew, Gregory, Richard, Hughes, Margaret ORCID: 0000-0001-7251-6821, Nelson, Charlotte, Rainbow, Lucille, Vamos, Edith E, Webster, Hermione J, Whitehead, Mark ORCID: 0000-0002-0452-1511, Wierzbicki, Claudia, Angyal, Adrienn, Green, Luke R, Whiteley, Max, Betteridge, Emma, Bronner, Iraad F, Farr, Ben W, Goodwin, Scott, Lensing, Stefanie V, McCarthy, Shane A, Quail, Michael A, Rajan, Diana, Redshaw, Nicholas M, Scott, Carol, Shirley, Lesley, Thurston, Scott AJ, Rowe, Will, Gaskin, Amy, Le-Viet, Thanh, Bonfield, James, Liddle, Jennifier, Whitwham, Andrew, Templeton, Kate, Gunson, Rory N, da Silva Filipe, Ana, Milosevic, Catriona, Thomson, Emma, Robertson, David L, Holden, Matthew TG, Illingworth, Christopher JR and Smith-Palmer, Alison (2022) Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning. 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Vöhringer, Harald S, Sanderson, Theo, Sinnott, Matthew, De Maio, Nicola, Nguyen, Thuy, Goater, Richard, Schwach, Frank, Harrison, Ian, Hellewell, Joel, Ariani, Cristina V et al (show 923 more authors) , Gonçalves, Sonia, Jackson, David K, Johnston, Ian, Jung, Alexander W, Saint, Callum, Sillitoe, John, Suciu, Maria, Goldman, Nick, Panovska-Griffiths, Jasmina, Abnizova, Irina, Aigrain, Louise, Alderton, Alex, Ali, Mozam, Allen, Laura, Amato, Roberto, Anderson, Ralph, Ariani, Cristina, Austin-Guest, Siobhan, Bala, Sendu, Barrett, Jeffrey, Bassett, Andrew, Battleday, Kristina, Beal, James, Beale, Mathew, Beaver, Charlotte, Bellany, Sam, Bellerby, Tristram, Bellis, Katie, Berger, Duncan, Berriman, Matt, Betteridge, Emma, Bevan, Paul, Binley, Simon, Bishop, Jason, Blackburn, Kirsty, Bonfield, James, Boughton, Nick, Bowker, Sam, Brendler-Spaeth, Timothy, Bronner, Iraad, Brooklyn, Tanya, Buddenborg, Sarah Kay, Bush, Robert, Caetano, Catarina, Cagan, Alex, Carter, Nicola, Cartwright, Joanna, Monteiro, Tiago Carvalho, Chapman, Liz, Chillingworth, Tracey-Jane, Clapham, Peter, Clark, Richard, Clarke, Adrian, Clarke, Catriona, Cole, Daryl, Cook, Elizabeth, Coppola, Maria, Cornell, Linda, Cornwell, Clare, Corton, Craig, Crackett, Abby, Cranage, Alison, Craven, Harriet, Craw, Sarah, Crawford, Mark, Cutts, Tim, Dabrowska, Monika, Davies, Matt, Davies, Robert, Dawson, Joseph, Day, Callum, Densem, Aiden, Dibling, Thomas, Dockree, Cat, Dodd, David, Dogga, Sunil, Dorman, Matthew, Dougan, Gordon, Dougherty, Martin, Dove, Alexander, Drummond, Lucy, Drury, Eleanor, Dudek, Monika, Durham, Jillian, Durrant, Laura, Easthope, Elizabeth, Eckert, Sabine, Ellis, Pete, Farr, Ben, Fenton, Michael, Ferrero, Marcella, Flack, Neil, Fordham, Howerd, Forsythe, Grace, Foulser, Luke, Francis, Matt, Fraser, Audrey, Freeman, Adam, Galvin, Anastasia, Garcia-Casado, Maria, Gedny, Alex, Girgis, Sophia, Glover, James, Goncalves, Sonia, Goodwin, Scott, Gould, Oliver, Gourtovaia, Marina, Gray, Andy, Gray, Emma, Griffiths, Coline, Gu, Yong, Guerin, Florence, Hamilton, Will, Hanks, Hannah, Harrison, Ewan, Harrott, Alexandria, Harry, Edward, Harvison, Julia, Heath, Paul, Hernandez-Koutoucheva, Anastasia, Hobbs, Rhiannon, Holland, Dave, Holmes, Sarah, Hornett, Gary, Hough, Nicholas, Huckle, Liz, Hughes-Hallet, Lena, Hunter, Adam, Inglis, Stephen, Iqbal, Sameena, Jackson, Adam, Jackson, David, James, Keith, Jamrozy, Dorota, Verdejo, Carlos Jimenez, Jones, Matthew, Kallepally, Kalyan, Kane, Leanne, Kay, Keely, Kay, Sally, Keatley, Jon, Keith, Alan, King, Alison, Kitchin, Lucy, Kleanthous, Matt, Klimekova, Martina, Korlevic, Petra, Krasheninnkova, Ksenia, Lane, Greg, Langford, Cordelia, Laverack, Adam, Law, Katharine, Lawniczak, Mara, Lensing, Stefanie, Leonard, Steven, Letchford, Laura, Lewis, Kevin, Lewis-Wade, Amanah, Liddle, Jennifer, Lin, Quan, Lindsay, Sarah, Linsdell, Sally, Livett, Rich, Lo, Stephanie, Long, Rhona, Lovell, Jamie, Lovell, Jon, Ludden, Catherine, Mack, James, Maddison, Mark, Makunin, Aleksei, Mamun, Irfan, Mansfield, Jenny, Marriott, Neil, Martin, Matt, Mayho, Matthew, McCarthy, Shane, McClintock, Jo, McGuigan, Samantha, McHugh, Sandra, McMinn, Liz, Meadows, Carl, Mobley, Emily, Moll, Robin, Morra, Maria, Morrow, Leanne, Murie, Kathryn, Nash, Sian, Nathwani, Claire, Naydenova, Plamena, Neaverson, Alexandra, Nelson, Rachel, Nerou, Ed, Nicholson, Jon, Nimz, Tabea, Noell, Guillaume G, O’Meara, Sarah, Ohan, Valeriu, Oliver, Karen, Olney, Charles, Ormond, Doug, Oszlanczi, Agnes, Palmer, Steve, Pang, Yoke Fei, Pardubska, Barbora, Park, Naomi, Parmar, Aaron, Patel, Gaurang, Patel, Minal, Payne, Maggie, Peacock, Sharon, Petersen, Arabella, Plowman, Deborah, Preston, Tom, Prestwood, Liam, Puethe, Christoph, Quail, Michael, Rajan, Diana, Rajatileka, Shavanthi, Rance, Richard, Rawlings, Suzannah, Redshaw, Nicholas, Reynolds, Joe, Reynolds, Mark, Rice, Simon, Richardson, Matt, Roberts, Connor, Robinson, Katrina, Robinson, Melanie, Robinson, David, Rogers, Hazel, Rojo, Eduardo Martin, Roopra, Daljit, Rose, Mark, Rudd, Luke, Sadri, Ramin, Salmon, Nicholas, Saul, David, Schwach, Frank, Scott, Carol, Seekings, Phil, Shirley, Lesley, Simms, Alison, Sinnott, Matthew, Sivadasan, Shanthi, Siwek, Bart, Sizer, Dale, Skeldon, Kenneth, Skelton, Jason, Slater-Tunstill, Joanna, Sloper, Lisa, Smerdon, Nathalie, Smith, Chris, Smith, Christen, Smith, James, Smith, Katie, Smith, Michelle, Smith, Sean, Smith, Tina, Sneade, Leighton, Soria, Carmen Diaz, Sousa, Catarina, Souster, Emily, Sparkes, Andrew, Spencer-Chapman, Michael, Squares, Janet, Stanley, Robert, Steed, Claire, Stickland, Tim, Still, Ian, Stratton, Michael R, Strickland, Michelle, Swann, Allen, Swiatkowska, Agnieszka, Sycamore, Neil, Swift, Emma, Symons, Edward, Szluha, Suzanne, Taluy, Emma, Tao, Nunu, Taylor, Katy, Taylor, Sam, Thompson, Stacey, Thompson, Mark, Thomson, Mark, Thomson, Nicholas, Thurston, Scott, Tonkin-Hill, Gerry, Toombs, Dee, Topping, Benjamin, Tovar-Corona, Jaime, Ungureanu, 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Fairley, Derek J, Loose, Matthew W, Watkins, Joanne, Moses, Samuel, Nicholls, Sam, Bull, Matthew, Smith, Darren L, Aanensen, David M, Aggarwal, Dinesh, Shepherd, James G, Curran, Martin D, Parmar, Surendra, Parker, Matthew D, Williams, Catryn, Glaysher, Sharon, Underwood, Anthony P, Bashton, Matthew, Pacchiarini, Nicole, Loveson, Katie F, Byott, Matthew, Carabelli, Alessandro M, Templeton, Kate E, de Silva, Thushan I, Wang, Dennis, Langford, Cordelia F, Gunson, Rory N, Cottrell, Simon, O’Grady, Justin, Kwiatkowski, Dominic, Lillie, Patrick J, Cortes, Nicholas, Moore, Nathan, Thomas, Claire, Burns, Phillipa J, Mahungu, Tabitha W, Liggett, Steven, Beckett, Angela H, Holden, Matthew TG, Levett, Lisa J, Osman, Husam, Hassan-Ibrahim, Mohammed O, Simpson, David A, Chand, Meera, Gupta, Ravi K, Darby, Alistair C ORCID: 0000-0002-3786-6209, Paterson, Steve, Pybus, Oliver G, Volz, Erik M, de Angelis, Daniela, Robertson, David L, Page, Andrew J, Bassett, Andrew R, Wong, Nick, Taha, Yusri, 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Macklin, Ben, Iturriza-Gomara, Miren, Lucaci, Anita O, McClure, Patrick C, Carlile, Matthew, Holmes, Nadine, Moore, Christopher, Storey, Nathaniel, Rooke, Stefan, Yebra, Gonzalo, Craine, Noel, Perry, Malorie, Alikhan, Nabil-Fareed, Bridgett, Stephen, Cook, Kate F, Fearn, Christopher, Goudarzi, Salman, Lyons, Ronan A, Williams, Thomas, Haldenby, Sam T, Davies, Robert M, Batra, Rahul, Blane, Beth, Spyer, Moira J, Smith, Perminder, Yavus, Mehmet, Williams, Rachel J, Mahanama, Adhyana IK, Samaraweera, Buddhini, Girgis, Sophia T, Hansford, Samantha E, Green, Angie, Bellis, Katherine L, Dorman, Matthew J, Quick, Joshua, Poplawski, Radoslaw, Reynolds, Nicola, Mack, Andrew, Morriss, Arthur, Whalley, Thomas, Patel, Bindi, Georgana, Iliana, Hosmillo, Myra, Pinckert, Malte L, Stockton, Joanne, Henderson, John H, Hollis, Amy, Stanley, William, Yew, Wen C, Myers, Richard, Thornton, Alicia, Adams, Alexander, Annett, Tara, Asad, Hibo, Birchley, Alec, Coombes, Jason, Evans, Johnathan M, Fina, Laia, 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Paul W, Fallon, Karlie, Helmer, Thomas, McMurray, Claire L, Odedra, Mina, Shaw, Jessica, Tang, Julian W, Willford, Nicholas J, Blakey, Victoria, Raviprakash, Veena, Sheriff, Nicola, Williams, Lesley-Anne, Feltwell, Theresa, Bedford, Luke, Cargill, James S, Hughes, Warwick, Moore, Jonathan, Stonehouse, Susanne, Atkinson, Laura, Lee, Jack CD, Shah, Divya, Alcolea, Adela, Ohemeng-Kumi, Natasha, Ramble, John, Sehmi, Jasveen, Williams, Rebecca, Chatterton, Wendy, Pusok, Monika, Everson, William, Castigador, Anibolina, Macnaughton, Emily, El Bouzidi, Kate, Lampejo, Temi, Sudhanva, Malur, Breen, Cassie, Sluga, Graciela, Ahmad, Shazaad SY, George, Ryan P, Machin, Nicholas W, Binns, Debbie, James, Victoria, Blacow, Rachel, Coupland, Lindsay, Smith, Louise, Barton, Edward, Padgett, Debra, Scott, Garren, Cross, Aidan, Mirfenderesky, Mariyam, Greenaway, Jane, Cole, Kevin, Clarke, Phillip, Duckworth, Nichola, Walsh, Sarah, Bicknell, Kelly, Impey, Robert, Wyllie, Sarah, Hopes, Richard, Bishop, Chloe, Chalker, Vicki, Gifford, Laura, Molnar, Zoltan, Auckland, Cressida, Evans, Cariad, Johnson, Kate, Partridge, David G, Raza, Mohammad, Baker, Paul, Bonner, Stephen, Essex, Sarah, Murray, Leanne J, Lawton, Andrew I, Burton-Fanning, Shirelle, Payne, Brendan AI, Waugh, Sheila, Gomes, Andrea N, Kimuli, Maimuna, Murray, Darren R, Ashfield, Paula, Dobie, Donald, Ashford, Fiona, Best, Angus, Crawford, Liam, Cumley, Nicola, Mayhew, Megan, Megram, Oliver, Mirza, Jeremy, Moles-Garcia, Emma, Percival, Benita, Ensell, Leah, Lowe, Helen L, Maftei, Laurentiu, Mondani, Matteo, Chaloner, Nicola J, Cogger, Benjamin J, Easton, Lisa J, Huckson, Hannah, Lewis, Jonathan, Lowdon, Sarah, Malone, Cassandra S, Munemo, Florence, Mutingwende, Manasa, Nicodemi, Roberto, Podplomyk, Olga, Somassa, Thomas, Beggs, Andrew, Richter, Alex, Cormie, Claire, Dias, Joana, Forrest, Sally, Higginson, Ellen E, Maes, Mailis, Young, Jamie, Davidson, Rose K, Jackson, Kathryn A, Turtle, Lance, Keeley, Alexander J, Ball, 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Eales, Oliver, Page, Andrew J, de Oliveira Martins, Leonardo, Wang, Haowei, Bodinier, Barbara, Haw, David, Jonnerby, Jakob, Atchison, Christina, Robson, Samuel C, Connor, Thomas R et al (show 638 more authors) , Loman, Nicholas J, Golubchik, Tanya, Nunez, Rocio T Martinez, Bonsall, David, Rambaut, Andrew, Snell, Luke B, Livett, Rich, Ludden, Catherine, Corden, Sally, Nastouli, Eleni, Nebbia, Gaia, Johnston, Ian, Lythgoe, Katrina, Torok, M Estee, Goodfellow, Ian G, Prieto, Jacqui A, Saeed, Kordo, Jackson, David K, Houlihan, Catherine, Frampton, Dan, Hamilton, William L, Witney, Adam A, Bucca, Giselda, Pope, Cassie F, Moore, Catherine, Thomson, Emma C, Harrison, Ewan M, Smith, Colin P, Rogan, Fiona, Beckwith, Shaun M, Murray, Abigail, Singleton, Dawn, Eastick, Kirstine, Sheridan, Liz A, Randell, Paul, Jackson, Leigh M, Ariani, Cristina V, Gonçalves, Sónia, Fairley, Derek J, Loose, Matthew W, Watkins, Joanne, Moses, Samuel, Nicholls, Sam, Bull, Matthew, Amato, Roberto, Smith, Darren L, Aanensen, David M, Barrett, Jeffrey C, Aggarwal, Dinesh, Shepherd, James G, Curran, Martin D, Parmar, Surendra, Parker, Matthew D, Williams, Catryn, Glaysher, Sharon, Underwood, Anthony P, Bashton, Matthew, Pacchiarini, Nicole, Loveson, Katie F, Byott, Matthew, Carabelli, Alessandro M, Templeton, Kate E, de Silva, Thushan I, Wang, Dennis, Langford, Cordelia F, Sillitoe, John, Gunson, Rory N, Cottrell, Simon, O’Grady, Justin, Kwiatkowski, Dominic, Lillie, Patrick J, Cortes, Nicholas, Moore, Nathan, Thomas, Claire, Burns, Phillipa J, Mahungu, Tabitha W, Liggett, Steven, Beckett, Angela H, Holden, Matthew TG, Levett, Lisa J, Osman, Husam, Hassan-Ibrahim, Mohammed O, Simpson, David A, Chand, Meera, Gupta, Ravi K, Darby, Alistair C ORCID: 0000-0002-3786-6209, Paterson, Steve ORCID: 0000-0002-1307-2981, Pybus, Oliver G, Volz, Erik M, de Angelis, Daniela, Robertson, David L, Martincorena, Inigo, Aigrain, Louise, Bassett, Andrew R, Wong, Nick, Taha, Yusri, Erkiert, Michelle J, Chapman, Michael H Spencer, Dewar, Rebecca, McHugh, Martin P, Mookerjee, Siddharth, Aplin, Stephen, Harvey, Matthew, Sass, Thea, Umpleby, Helen, Wheeler, Helen, McKenna, James P, Warne, Ben, Taylor, Joshua F, Chaudhry, Yasmin, Izuagbe, Rhys, Jahun, Aminu S, Young, Gregory R, McMurray, Claire, McCann, Clare M, Nelson, Andrew, Elliott, Scott, Lowe, Hannah, Price, Anna, Crown, Matthew R, Rey, Sara, Roy, Sunando, Temperton, Ben, Shaaban, Sharif, Hesketh, Andrew R, Laing, Kenneth G, Monahan, Irene M, Heaney, Judith, Pelosi, Emanuela, Silviera, Siona, Wilson-Davies, Eleri, Fryer, Helen, Adams, Helen, du Plessis, Louis, Johnson, Rob, Harvey, William T, Hughes, Joseph, Orton, Richard J, Spurgin, Lewis G, Bourgeois, Yann, Ruis, Chris, O’Toole, Áine, Gourtovaia, Marina, Sanderson, Theo, Fraser, Christophe, Edgeworth, Jonathan, Breuer, Judith, Michell, Stephen L, Todd, John A, John, Michaela, Buck, David, Gajee, Kavitha, Kay, Gemma L, Peacock, Sharon J, Heyburn, David, Kitchman, Katie, McNally, Alan, Pritchard, David T, Dervisevic, Samir, Muir, Peter, Robinson, Esther, Vipond, Barry B, Ramadan, Newara A, Jeanes, Christopher, Weldon, Danni, Catalan, Jana, Jones, Neil, da Silva Filipe, Ana, Williams, Chris, Fuchs, Marc, Miskelly, Julia, Jeffries, Aaron R, Oliver, Karen, Park, Naomi R, Ash, Amy, Koshy, Cherian, Barrow, Magdalena, Buchan, Sarah L, Mantzouratou, Anna, Clark, Gemma, Holmes, Christopher W, Campbell, Sharon, Davis, Thomas, Tan, Ngee Keong, Brown, Julianne R, Harris, Kathryn A, Kidd, Stephen P, Grant, Paul R, Xu-McCrae, Li, Cox, Alison, Madona, Pinglawathee, Pond, Marcus, Randell, Paul A, Withell, Karen T, Williams, Cheryl, Graham, Clive, Denton-Smith, Rebecca, Swindells, Emma, Turnbull, Robyn, Sloan, Tim J, Bosworth, Andrew, Hutchings, Stephanie, Pymont, Hannah M, Casey, Anna, Ratcliffe, Liz, Jones, Christopher R, Knight, Bridget A, Haque, Tanzina, Hart, Jennifer, Irish-Tavares, Dianne, Witele, Eric, Mower, Craig, Watson, Louisa K, Collins, Jennifer, Eltringham, Gary, Crudgington, Dorian, Macklin, Ben, Iturriza-Gomara, Miren, Lucaci, Anita O, McClure, Patrick C, Carlile, Matthew, Holmes, Nadine, Moore, Christopher, Storey, Nathaniel, Rooke, Stefan, Yebra, Gonzalo, Craine, Noel, Perry, Malorie, Alikhan, Nabil-Fareed, Bridgett, Stephen, Cook, Kate F, Fearn, Christopher, Goudarzi, Salman, Lyons, Ronan A, Williams, Thomas, Haldenby, Sam T, Durham, Jillian, Leonard, Steven, Davies, Robert M, Batra, Rahul, Blane, Beth, Spyer, Moira J, Smith, Perminder, Yavus, Mehmet, Williams, Rachel J, Mahanama, Adhyana IK, Samaraweera, Buddhini, Girgis, Sophia T, Hansford, Samantha E, Green, Angie, Beaver, Charlotte, Bellis, Katherine L, Dorman, Matthew J, Kay, Sally, Prestwood, Liam, Rajatileka, Shavanthi, Quick, Joshua, Poplawski, Radoslaw, Reynolds, Nicola, Mack, Andrew, Morriss, Arthur, Whalley, Thomas, Patel, Bindi, Georgana, Iliana, Hosmillo, Myra, Pinckert, Malte L, Stockton, Joanne, Henderson, John H, Hollis, Amy, Stanley, William, Yew, Wen C, Myers, Richard, Thornton, Alicia, Adams, Alexander, Annett, Tara, Asad, Hibo, Birchley, Alec, Coombes, Jason, Evans, Johnathan M, Fina, Laia, Gatica-Wilcox, Bree, Gilbert, Lauren, Graham, Lee, Hey, Jessica, Hilvers, Ember, Jones, Sophie, Jones, Hannah, Kumziene-Summerhayes, Sara, McKerr, Caoimhe, Powell, Jessica, Pugh, Georgia, Taylor, Sarah, Trotter, Alexander J, Williams, Charlotte A, Kermack, Leanne M, Foulkes, Benjamin H, Gallis, Marta, Hornsby, Hailey R, Louka, Stavroula F, Pohare, Manoj, Wolverson, Paige, Zhang, Peijun, MacIntyre-Cockett, George, Trebes, Amy, Moll, Robin J, Ferguson, Lynne, Goldstein, Emily J, Maclean, Alasdair, Tomb, Rachael, Starinskij, Igor, Thomson, Laura, Southgate, Joel, Kraemer, Moritz UG, Raghwani, Jayna, Zarebski, Alex E, Boyd, Olivia, Geidelberg, Lily, Illingworth, Chris J, Jackson, Chris, Pascall, David, Vattipally, Sreenu, Freeman, Timothy M, Hsu, Sharon N, Lindsey, Benjamin B, James, Keith, Lewis, Kevin, Tonkin-Hill, Gerry, Tovar-Corona, Jaime M, Cox, MacGregor, Abudahab, Khalil, Menegazzo, Mirko, MEng, Ben EW Taylor, Yeats, Corin A, Mukaddas, Afrida, Wright, Derek W, Colquhoun, Rachel, Hill, Verity, Jackson, Ben, McCrone, JT, Medd, Nathan, Scher, Emily, Keatley, Jon-Paul, Curran, Tanya, Morgan, Sian, Maxwell, Patrick, Smith, Ken, Eldirdiri, Sahar, Kenyon, Anita, Holmes, Alison H, Price, James R, Wyatt, Tim, Mather, Alison E, Skvortsov, Timofey, Hartley, John A, Guest, Martyn, Kitchen, Christine, Merrick, Ian, Munn, Robert, Bertolusso, Beatrice, Lynch, Jessica, Vernet, Gabrielle, Kirk, Stuart, Wastnedge, Elizabeth, Stanley, Rachael, Idle, Giles, Bradley, Declan T, Poyner, Jennifer, Mori, Matilde, Jones, Owen, Wright, Victoria, Brooks, Ellena, Churcher, Carol M, Fragakis, Mireille, Galai, Katerina, Jermy, Andrew, Judges, Sarah, McManus, Georgina M, Smith, Kim S, Westwick, Elaine, Attwood, Stephen W, Bolt, Frances, Davies, Alisha, De Lacy, Elen, Downing, Fatima, Edwards, Sue, Meadows, Lizzie, Jeremiah, Sarah, Smith, Nikki, Foulser, Luke, Charalampous, Themoula, Patel, Amita, Berry, Louise, Boswell, Tim, Fleming, Vicki M, Howson-Wells, Hannah C, Joseph, Amelia, Khakh, Manjinder, Lister, Michelle M, Bird, Paul W, Fallon, Karlie, Helmer, Thomas, McMurray, Claire L, Odedra, Mina, Shaw, Jessica, Tang, Julian W, Willford, Nicholas J, Blakey, Victoria, Raviprakash, Veena, Sheriff, Nicola, Williams, Lesley-Anne, Feltwell, Theresa, Bedford, Luke, Cargill, James S, Hughes, Warwick, Moore, Jonathan, Stonehouse, Susanne, Atkinson, Laura, Lee, Jack CD, Shah, Divya, Alcolea-Medina, Adela, Ohemeng-Kumi, Natasha, Ramble, John, Sehmi, Jasveen, Williams, Rebecca, Chatterton, Wendy, Pusok, Monika, Everson, William, Castigador, Anibolina, Macnaughton, Emily, Bouzidi, Kate El, Lampejo, Temi, Sudhanva, Malur, Breen, Cassie, Sluga, Graciela, Ahmad, Shazaad SY, George, Ryan P, Machin, Nicholas W, Binns, Debbie, James, Victoria, Blacow, Rachel, Coupland, Lindsay, Smith, Louise, Barton, Edward, Padgett, Debra, Scott, Garren, Cross, Aidan, Mirfenderesky, 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