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Siggins, Matthew K, Davies, Kate, Fellows, Rosie, Thwaites, Ryan S, Baillie, J Kenneth, Semple, Malcolm G, Openshaw, Peter JM, Zelek, Wioleta M, Harris, Claire L, Morgan, B Paul et al (show 1 more authors) and ISARIC4C Investigators, (2022) Alternative pathway dysregulation in tissues drives sustained complement activation and predicts outcome across the disease course in COVID-19. Immunology.

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Garrod, Gala, Owen, Sophie ORCID: 0000-0002-0458-2357, Baillie, Kenneth, Baldwin, Lisa, Brown, Lottie, Byrne, Rachel ORCID: 0000-0001-5398-3125, Cubas-Atienzar, Ana ORCID: 0000-0002-9604-124X, Cuevas, Luis ORCID: 0000-0002-6581-0587, Fraser, Alice, Fletcher, Thomas ORCID: 0000-0002-3712-415X et al (show 13 more authors) , Goodwin, Lynsey, Kay, Grant, Kontogianni, Konstantina, Mason, Jenifer, Openshaw, Peter JM, Menzies, Stefanie, Moore, Shona, Semple, Malcolm ORCID: 0000-0001-9700-0418, Taylor, Joseph, Turtle, Lance CW ORCID: 0000-0002-0778-1693, Williams, Christopher, Adams, Emily and ISARIC4C Investigators, (2021) Comparative evaluation of ten lateral flow immunoassays to detect SARS-CoV-2 antibodies. Wellcome Open Research, 6. p. 18.

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Thompson, CP ORCID: 0000-0001-9248-9365, Grayson, N, Paton, RS, Bolton, J, Lourenco, J ORCID: 0000-0001-9803-5209, Penman, BS, Lee, L ORCID: 0000-0003-3915-3015, Odon, V, Mongkolsapaya, J, Chinnakannan, S ORCID: 0000-0002-4404-0229 et al (show 27 more authors) , Dejnirattisai, W, Edmans, M, Fyfe, A, Imlach, C, Kooblall, K, Lim, N, Liu, C, Lopez-Camacho, C, McInally, C, McNaughton, AL, Ramamurthy, N, Ratcliff, J, Supasa, P, Sampson, O, Wang, B ORCID: 0000-0001-9700-0418, Mentzer, A ORCID: 0000-0002-4502-2209, Turner, M, Semple, MG ORCID: 0000-0001-9700-0418, Baillie, JK, Harvala, H, Screaton, GR ORCID: 0000-0002-3549-4309, Temperton, N ORCID: 0000-0002-7978-3815, Klenerman, P ORCID: 0000-0003-4307-9161, Jarvis, LM, Gupta, S, Simmonds, P and ISARIC4C Investigators, (2020) Detection of neutralising antibodies to SARS coronavirus 2 to determine population exposure in Scottish blood donors between March and May 2020. medRxiv.

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McNaughton, Anna, Paton, Robert, Edmans, Matthew, Youngs, Jonathan, Wellens, Judith, Phalora, Prabhjeet, Fyfe, Alex, Belij-Rammerstorfer, Sandra, Bolton, Jai, Ball, Jonathan et al (show 47 more authors) , Carnell, George ORCID: 0000-0001-8875-0989, Dejnirattisai, Wanwisa, Dold, Christina, Eyre, David ORCID: 0000-0001-5095-6367, Hopkins, Philip, Howarth, Alison, Kooblall, Kreepa, Klim, Hannah, Leaver, Susannah, Lee, Lian, López-Camacho, César, Lumley, Sheila, Macallan, Derek, Mentzer, Alexander, Provine, Nicholas, Ratcliff, Jeremy, Slon-Compos, Jose, Skelly, Donal, Stolle, Lucas, Supasa, Piyada, Temperton, Nigel ORCID: 0000-0002-7978-3815, Walker, Chris, Wang, Beibei, Wyncoll, Duncan, Simmonds, Peter, Lambe, Teresa, Baillie, Kenneth, Semple, Malcolm ORCID: 0000-0001-9700-0418, Openshaw, Peter IM, Obolski, Uri, Turner, Marc, Carroll, Miles, Mongkolsapaya, Juthathip, Screaton, Gavin, Kennedy, Stephen, Jarvis, Lisa, Barnes, Eleanor ORCID: 0000-0002-0860-0831, Dunachie, Susanna ORCID: 0000-0001-5665-6293, Lourenço, José, Matthews, Philippa, Bicanic, Tihana, Klenerman, Paul ORCID: 0000-0003-4307-9161, Gupta, Sunetra, Thompson, Craig ORCID: 0000-0001-9248-9365, OPTIC consortium, , SNBTS consortium, and ISARIC4C Investigators, (2021) Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses. [Preprint]

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Docherty, AB, Harrison, EM, Green, CA ORCID: 0000-0002-1984-4014, Hardwick, H ORCID: 0000-0003-3421-6435, Pius, R, Norman, L ORCID: 0000-0002-3490-2788, Holden, KA, Read, JM, Dondelinger, F ORCID: 0000-0003-1816-6300, Carson, G ORCID: 0000-0001-8439-9933 et al (show 14 more authors) , Merson, L, Lee, J, Plotkin, D, Sigfrid, L ORCID: 0000-0003-2764-1177, Halpin, S ORCID: 0000-0003-1310-2594, Jackson, C, Gamble, C ORCID: 0000-0002-3021-1955, Horby, PW, Nguyen-Van-Tam, JS, Dunning, J ORCID: 0000-0002-4035-4562, Openshaw, PJM, Baillie, JK, Semple, MG ORCID: 0000-0001-9700-0418 and ISARIC4C Investigators, (2020) Features of 16,749 hospitalised UK patients with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol. MedRxiv.

Keeling, Matt J, Dyson, Louise, Guyver-Fletcher, Glen, Holmes, Alex, Semple, Malcolm G ORCID: 0000-0001-9700-0418, ISARIC4C Investigators, , Tildesley, Michael J and Hill, Edward M (2021) Fitting to the UK COVID-19 outbreak, short-term forecasts and estimating the reproductive number. medRxiv.

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Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah, Prince, Tessa, Randle, Nadine, Salguero, Javier, Tree, Julia, Vamos, Ecaterina, Nelson, Charlotte, Stewart, James ORCID: 0000-0002-8928-2037 et al (show 10 more authors) , Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth, Openshaw, Peter, Turtle, Lance, Matthews, David, Carroll, Miles, Darby, Alistair ORCID: 0000-0002-3786-6209, Hiscox, Julian ORCID: 0000-0002-6582-0275, ISARIC4C Investigators, and COVID-19 Genomics UK (COG-UK) Consortium, (2021) Identification and quantification of SARS-CoV-2 leader subgenomic mRNA gene junctions in nasopharyngeal samples shows phasic transcription in animal models of COVID-19 and dysregulation at later time points that can also be identified in humans. bioRxiv.

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Leclerc, Quentin ORCID: 0000-0003-4761-001X, Fuller, Naomi ORCID: 0000-0003-4026-5591, Keogh, Ruth, Diaz-Ordaz, Karla ORCID: 0000-0003-3155-1561, Sekula, Richard, Semple, Malcolm ORCID: 0000-0001-9700-0418, Atkins, Katherine ORCID: 0000-0001-5250-0558, Procter, Simon ORCID: 0000-0002-0380-1503, Knight, Gwenan ORCID: 0000-0002-7263-9896, ISARIC4C Investigators, et al (show 1 more authors) and CMMID COVID-19 Working Group, (2021) Importance of patient bed pathways and length of stay differences in predicting COVID-19 bed occupancy in England. medRxiv.

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Drake, Thomas M, Fairfield, Cameron J, Pius, Riinu, Knight, Stephen R, Norman, Lisa, Girvan, Michelle, Hardwick, Hayley E, Docherty, Annemarie B, Thwaites, Ryan S, Openshaw, Peter JM et al (show 4 more authors) , Baillie, J Kenneth, Harrison, Ewen M, Semple, Malcolm G ORCID: 0000-0001-9700-0418 and ISARIC4C Investigators, (2021) Non-steroidal anti-inflammatory drug use and outcomes of COVID-19 in the ISARIC Clinical Characterisation Protocol UK cohort: a matched, prospective cohort study. The Lancet. Rheumatology, 3 (7). e498-e506.

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Drake, Thomas M, Docherty, Annemarie B, Harrison, Ewen M, Quint, Jennifer K, Adamali, Huzaifa, Agnew, Sarah, Babu, Suresh, Barber, Christopher M, Barratt, Shaney, Bendstrup, Elisabeth et al (show 61 more authors) , Bianchi, Stephen, Castillo Villegas, Diego, Chaudhuri, Nazia, Chua, Felix, Coker, Robina, Chang, William, Crawshaw, Anjali, Crowley, Louise E, Dosanjh, Davinder, Fiddler, Christine A, Forrest, Ian A, George, Peter M, Gibbons, Michael A, Groom, Katherine, Haney, Sarah, Hart, Simon P, Heiden, Emily, Henry, Michael, Ho, Ling-Pei, Hoyles, Rachel K, Hutchinson, John, Hurley, Killian, Jones, Mark G, Jones, Steve, Kokosi, Maria, Kreuter, Michael, Mackay, Laura S, Mahendran, Siva, Margaritopoulos, George, Molina-Molina, Maria, Molyneaux, Philip L, O'Brien, Aidan, O'Reilly, Katherine, Packham, Alice, Parfrey, Helen, Poletti, Venerino, Porter, Joanna C, Renzoni, Elisabetta, Rivera-Ortega, Pilar, Russell, Anne-Marie, Saini, Gauri, Spencer, Lisa G, Stella, Giulia M, Stone, Helen, Sturney, Sharon, Thickett, David, Thillai, Muhunthan, Wallis, Tim, Ward, Katie, Wells, Athol U, West, Alex, Wickremasinghe, Melissa, Woodhead, Felix, Hearson, Glenn, Howard, Lucy, Baillie, J Kenneth, Openshaw, Peter JM, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Stewart, Iain, Jenkins, R Gisli and ISARIC4C Investigators, (2020) Outcome of Hospitalization for COVID-19 in Patients with Interstitial Lung Disease: An International Multicenter Study. Am J Respir Crit Care Med, 202 (12). pp. 1656-1665.

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Drake, Thomas, Docherty, Annemarie, Harrison, Ewen ORCID: 0000-0002-5018-3066, Quint, Jennifer, Adamali, Huzaifa ORCID: 0000-0002-8230-175X, Adamali, Huzaifa ORCID: 0000-0003-0149-4869, Agnew, Sarah, Babu, Suresh, Barber, Christopher, Barratt, Shaney et al (show 63 more authors) , Bendstrup, Elisabeth ORCID: 0000-0002-4238-6963, Bendstrup, Elisabeth ORCID: 0000-0003-3067-7349, Bianchi, Stephen, Villegas, Diego Castillo, Chaudhuri, Nazia ORCID: 0000-0003-3325-6996, Chua, Felix ORCID: 0000-0001-7845-0173, Coker, Robina, Chang, William, Crawshaw, Anjali, Crowley, Louise, Dosanjh, Davinder, Fiddler, Christine, Forrest, Ian, George, Peter, Gibbons, Michael, Groom, Katherine, Haney, Sarah, Hart, Simon, Heiden, Emily, Henry, Michael, Ho, Ling-Pei, Hoyles, Rachel, Hutchinson, John, Hurley, Killian, Jones, Mark, Jones, Steve, Kokosi, Maria, Kreuter, Michael, MacKay, Laura, Mahendran, Siva, Margaritopoulos, George, Molina-Molina, Maria, Molyneaux, Philip, O’Brien, Aiden, O’Reilly, Katherine, Packham, Alice, Parfrey, Helen, Poletti, Venerino, Porter, Joanna ORCID: 0000-0002-7307-169X, Renzoni, Elisabetta, Rivera-Ortega, Pilar, Russell, Anne-Marie, Saini, Gauri, Spencer, Lisa, Stella, Giulia, Stone, Helen, Sturney, Sharon, Thickett, David, Thillai, Muhunthan, Wallis, Tim, Ward, Katie, Wells, Athol, West, Alex, Wickremasinghe, Melissa, Woodhead, Felix, Hearson, Glenn ORCID: 0000-0002-5815-3996, Howard, Lucy, Baillie, Kenneth, Openshaw, Peter JM, Semple, Malcolm ORCID: 0000-0001-9700-0418, Stewart, Iain, Jenkins, Gisli and ISARIC4C Investigators, ORCID: 0000-0002-7929-2119 (2020) Outcome of hospitalisation for COVID-19 in patients with Interstitial Lung Disease: An international multicentre study. medrxiv.

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Prince, Tessa, Dong, Xiaofeng, Penrice-Randal, Rebekah, Randle, Nadine, Hartley, Catherine, Goldswain, Hannah, Jones, Benjamin ORCID: 0000-0002-5162-9357, Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth ORCID: 0000-0001-5258-793X, Openshaw, Peter ORCID: 0000-0002-7220-2555 et al (show 10 more authors) , Turtle, Lance, Hughes, Grant ORCID: 0000-0002-7567-7185, Anderson, Enyia, Patterson, Edward, Druce, Julian, Screaton, Gavin, Carroll, Miles, Stewart, James, Hiscox, Julian and ISARIC4C Investigators, (2021) Sequence analysis of SARS-CoV-2 in nasopharyngeal samples from patients with COVID-19 illustrates population variation and diverse phenotypes, placing the in vitro growth properties of B.1.1.7 and B.1.351 lineage viruses in context. [Preprint]

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Funk, S, Abbott, S ORCID: 0000-0001-8057-8037, Atkins, BD, Baguelin, M, Baillie, JK ORCID: 0000-0001-5258-793X, Birrell, P, Blake, J ORCID: 0000-0001-7522-3741, Bosse, NI ORCID: 0000-0002-7750-5280, Burton, J ORCID: 0000-0001-8530-0464, Carruthers, J et al (show 40 more authors) , Davies, NG, De Angelis, D, Dyson, L, Edmunds, WJ, Eggo, RM ORCID: 0000-0002-0362-6717, Ferguson, NM, Gaythorpe, K, Gorsich, E, Guyver-Fletcher, G, Hellewell, J, Hill, EM, Holmes, A, House, TA ORCID: 0000-0001-5835-8062, Jewell, C, Jit, M ORCID: 0000-0001-6658-8255, Jombart, T, Joshi, I, Keeling, MJ, Kendall, E, Knock, ES, Kucharski, AJ, Lythgoe, KA, Meakin, SR, Munday, JD, Openshaw, PJM, Overton, CE, Pagani, F, Pearson, J ORCID: 0000-0002-0164-9499, Perez-Guzman, PN, Pellis, L ORCID: 0000-0002-3436-6487, Scarabel, F, Semple, MG ORCID: 0000-0001-9700-0418, Sherratt, K, Tang, M, Tildesley, MJ, Van Leeuwen, E, Whittles, LK ORCID: 0000-0002-8913-0391, CMMID COVID-19 Working Group, , Imperial College COVID-19 Response Team, and ISARIC4C Investigators, (2020) Short-term forecasts to inform the response to the Covid-19 epidemic in the UK. medRxiv.

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Knight, Gwenan ORCID: 0000-0002-7263-9896, Pham, Thi Mui, Stimson, James, Funk, Sebastian, Jafari, Yalda, Pople, Diane ORCID: 0000-0002-5031-0109, Evans, Stephanie ORCID: 0000-0002-2345-5249, Yin, Mo, Brown, Colin, Bhattacharya, Alex et al (show 7 more authors) , Hope, Russell, Semple, Malcolm ORCID: 0000-0001-9700-0418, Read, Jonathan, Cooper, Ben ORCID: 0000-0002-9445-7217, Robotham, Julie, ISARIC4C Investigators, and CMMID COVID-19 working group, (2021) The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020. [Preprint]