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Bengtsson, Rebecca J, Dallman, Timothy J, Allen, Hester, De Silva, P Malaka ORCID: 0000-0002-0579-0131, Stenhouse, George ORCID: 0000-0002-9681-9242, Pulford, Caisey V, Bennett, Rebecca J, Jenkins, Claire and Baker, Kate S ORCID: 0000-0001-5850-1949 (2021) Accessory Genome Dynamics and Structural Variation of <i>Shigella</i> from Persistent Infections. mBio, 12 (2). e00254-e00221.

Kintz, Erica, Brainard, Julii, Vanderes, Mike, Vivancos, Roberto, Byrne, Lisa, Butt, Saira, Jenkins, Claire, Elson, Richard, Lake, Iain and Hunter, Paul (2023) Animal and environmental risk factors for sporadic Shiga toxin-producing Escherichia coli (STEC) infection in England: a case control study for O157, O26 and other STEC serotypes. PATHOGENS AND GLOBAL HEALTH, 117 (7). pp. 655-663.

Elson, Richard, Davies, Tilman M, Jenkins, Claire, Vivancos, Roberto, O'Brien, Sarah J ORCID: 0000-0003-2896-8999 and Lake, Iain R (2020) Application of kernel smoothing to estimate the spatio-temporal variation in risk of STEC O157 in England. Spatial and Spatio-temporal Epidemiology, 32. p. 100305.

Buczkowska, Matylda, Butt, Saira, Jenkins, Claire, Hungerford, Daniel ORCID: 0000-0002-9770-0163, Hawker, Jeremy, Verlander, Neville Q, O’Connell, Anne-Marie and Byrne, Lisa (2023) Association between socioeconomic deprivation and incidence of Infectious Intestinal Disease by pathogen and linked transmission route: An ecological analysis in the UK. Epidemiology and Infection, 151. e109-.

Thorley, Katie, Charles, Hannah, Greig, David R, Prochazka, Mateo, Mason, Lewis CE ORCID: 0000-0001-5049-1352, Baker, Kate S ORCID: 0000-0001-5850-1949, Godbole, Gauri, Sinka, Katy and Jenkins, Claire (2023) Emergence of extensively drug-resistant and multidrug-resistant Shigella flexneri serotype 2a associated with sexual transmission among gay, bisexual, and other men who have sex with men, in England: a descriptive epidemiological study. LANCET INFECTIOUS DISEASES, 23 (6). pp. 732-739.

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De Silva, P Malaka ORCID: 0000-0002-0579-0131, Bennett, Rebecca J, Kuhn, Lauriane, Ngondo, Patryk ORCID: 0000-0003-4847-9375, Debande, Lorine ORCID: 0000-0003-2043-8707, Njamkepo, Elisabeth, Ho, Brian ORCID: 0000-0003-4979-780X, Weill, François-Xavier, Marteyn, Benoît S, Jenkins, Claire et al (show 1 more authors) and Baker, Kate S ORCID: 0000-0001-5850-1949 (2023) Escherichia coli killing by epidemiologically successful sublineages of Shigella sonnei is mediated by colicins. EBioMedicine, 97. 104822-.

Inns, Thomas ORCID: 0000-0002-1218-958X, Flanagan, Stephen, Greig, David R, Jenkins, Claire, Seddon, Keeley, Chin, Toong and Cartwright, Joanna (2018) First use of whole-genome sequencing to investigate a cluster of <i>Yersinia enterocolitica</i>, Liverpool, United Kingdom, 2017. JOURNAL OF MEDICAL MICROBIOLOGY, 67 (12). pp. 1747-1752.

Sumilo, Dana, Love, Nicola K ORCID: 0000-0003-3750-7158, Manuel, Rohini, Dabke, Girija, Paranthaman, Karthik, Jenkins, Claire and McCarthy, Noel D (2023) Forgotten but not gone:<i> Yersinia</i> infections in England, 1975 to 2020. EUROSURVEILLANCE, 28 (14). 2200516-.

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Baker, Kate S ORCID: 0000-0001-5850-1949, Dallman, Timothy J, Field, Nigel, Childs, Tristan, Mitchell, Holly, Day, Martin, Weill, Francois-Xavier, Lefevre, Sophie, Tourdjman, Mathieu, Hughes, Gwenda et al (show 2 more authors) , Jenkins, Claire and Thomson, Nicholas (2018) Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance. SCIENTIFIC REPORTS, 8 (1).

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Carey, Megan E ORCID: 0000-0002-7797-9080, Dyson, Zoe A ORCID: 0000-0002-8887-3492, Ingle, Danielle J, Amir, Afreenish, Aworh, Mabel K, Chattaway, Marie Anne, Chew, Ka Lip, Crump, John A ORCID: 0000-0002-4529-102X, Feasey, Nicholas A, Howden, Benjamin P ORCID: 0000-0003-0237-1473 et al (show 105 more authors) , Keddy, Karen H, Maes, Mailis, Parry, Christopher M ORCID: 0000-0001-7563-7282, Van Puyvelde, Sandra ORCID: 0000-0001-8434-5732, Webb, Hattie E ORCID: 0000-0002-1190-7930, Afolayan, Ayorinde Oluwatobiloba ORCID: 0000-0003-1405-2365, Alexander, Anna P, Anandan, Shalini, Andrews, Jason R ORCID: 0000-0002-5967-251X, Ashton, Philip M, Basnyat, Buddha, Bavdekar, Ashish, Bogoch, Isaac I, Clemens, John D, da Silva, Kesia Esther, De, Anuradha ORCID: 0000-0002-8701-4100, de Ligt, Joep, Diaz Guevara, Paula Lucia ORCID: 0000-0002-8252-5622, Dolecek, Christiane, Dutta, Shanta, Ehlers, Marthie M, Francois Watkins, Louise ORCID: 0000-0002-1165-1162, Garrett, Denise O, Godbole, Gauri, Gordon, Melita A ORCID: 0000-0002-0629-0884, Greenhill, Andrew R, Griffin, Chelsey, Gupta, Madhu, Hendriksen, Rene S, Heyderman, Robert S, Hooda, Yogesh, Hormazabal, Juan Carlos, Ikhimiukor, Odion O ORCID: 0000-0002-3738-4584, Iqbal, Junaid ORCID: 0000-0002-5014-2176, Jacob, Jobin John, Jenkins, Claire, Jinka, Dasaratha Ramaiah ORCID: 0000-0002-8184-279X, John, Jacob ORCID: 0000-0003-3654-5099, Kang, Gagandeep ORCID: 0000-0002-3656-564X, Kanteh, Abdoulie, Kapil, Arti, Karkey, Abhilasha, Kariuki, Samuel ORCID: 0000-0003-3209-9503, Kingsley, Robert A, Koshy, Roshine Mary, Lauer, AC, Levine, Myron M, Lingegowda, Ravikumar Kadahalli, Luby, Stephen P, Mackenzie, Grant Austin, Mashe, Tapfumanei, Msefula, Chisomo ORCID: 0000-0003-2304-886X, Mutreja, Ankur, Nagaraj, Geetha, Nagaraj, Savitha, Nair, Satheesh ORCID: 0000-0002-7297-1485, Naseri, Take K, Nimarota-Brown, Susana, Njamkepo, Elisabeth, Okeke, Iruka N ORCID: 0000-0002-1694-7587, Perumal, Sulochana Putli Bai, Pollard, Andrew J, Pragasam, Agila Kumari, Qadri, Firdausi, Qamar, Farah N, Rahman, Sadia Isfat Ara, Rambocus, Savitra Devi, Rasko, David A, Ray, Pallab, Robins-Browne, Roy, Rongsen-Chandola, Temsunaro, Rutanga, Jean Pierre ORCID: 0000-0002-5273-6170, Saha, Samir K ORCID: 0000-0003-3820-0748, Saha, Senjuti ORCID: 0000-0001-6087-6766, Saigal, Karnika, Sajib, Mohammad Saiful Islam, Seidman, Jessica C, Shakya, Jivan, Shamanna, Varun, Shastri, Jayanthi, Shrestha, Rajeev, Sia, Sonia, Sikorski, Michael J, Singh, Ashita, Smith, Anthony M, Tagg, Kaitlin A, Tamrakar, Dipesh, Tanmoy, Arif Mohammed, Thomas, Maria, Thomas, Mathew S, Thomsen, Robert, Thomson, Nicholas R, Tupua, Siaosi, Vaidya, Krista, Valcanis, Mary, Veeraraghavan, Balaji, Weill, François-Xavier, Wright, Jackie, Dougan, Gordon, Argimón, Silvia, Keane, Jacqueline A, Aanensen, David M ORCID: 0000-0001-6688-0854, Baker, Stephen, Holt, Kathryn E ORCID: 0000-0003-3949-2471 and Global Typhoid Genomics Consortium Group Authorship, (2023) Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 <i>Salmonella</i> Typhi genomes. eLife, 12. e85867-.

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Hawkey, Jane, Paranagama, Kalani, Baker, Kate S ORCID: 0000-0001-5850-1949, Bengtsson, Rebecca J, Weill, Francois-Xavier, Thomson, Nicholas R, Baker, Stephen, Cerdeira, Louise, Iqbal, Zamin, Hunt, Martin et al (show 5 more authors) , Ingle, Danielle J, Dallman, Timothy J, Jenkins, Claire, Williamson, Deborah A and Holt, Kathryn E (2021) Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, <i>Shigella sonnei</i>. NATURE COMMUNICATIONS, 12 (1). 2684-.

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Baker, KS ORCID: 0000-0001-5850-1949, Dallman, Timothy, Field, Nigel, Childs, Tristan, Mitchell, Holly, Day, Martin, Weill, Francois-Xavier, Lefevre, Sophie, Tourdjman, Mathieu, Hughes, Gwenda et al (show 2 more authors) , Jenkins, Claire and Thomson, Nicholas (2018) Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species. Nature Communications, 9 (1). 1462-.

Morgan, Genever ORCID: 0000-0002-3658-5499, Saal, Mikhela, Corr, Aoife, Jenkins, Claire, Chattaway, Marie Anne, Pinchbeck, Gina ORCID: 0000-0002-5671-8623 and Williams, Nicola (2023) Isolation of <i>Salmonella</i> species of public health concern from commonly fed dried meat dog treats. VETERINARY RECORD, 192 (7). e2642-.

Kintz, Erica, Byrne, Lisa, Jenkins, Claire, Mccarthy, Noel, Vivancos, Roberto and Hunter, Paul (2019) Outbreaks of Shiga Toxin-Producing Escherichia coli Linked to Sprouted Seeds, Salad, and Leafy Greens: A Systematic Review. JOURNAL OF FOOD PROTECTION, 82 (11). pp. 1950-1958.

Bardsley, Megan, Jenkins, Claire, Mitchell, Holly D, Mikhail, Amy FW, Baker, Kate S ORCID: 0000-0001-5850-1949, Foster, Kirsty, Hughes, Gwenda and Dallman, Timothy J (2020) Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of <i>Shigella sonnei</i>. JOURNAL OF CLINICAL MICROBIOLOGY, 58 (4). e01692-e01619.

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Neuert, Saskia, Nair, Satheesh, Day, Martin R, Doumith, Michel, Ashton, Philip M, Mellor, Kate C, Jenkins, Claire, Hopkins, Katie L, Woodford, Neil, de Pinna, Elizabeth et al (show 2 more authors) , Godbole, Gauri and Dallman, Timothy J (2018) Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal <i>Salmonella enterica</i>. FRONTIERS IN MICROBIOLOGY, 9 (MAR). 592-.

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Ashton, Philip M, Owen, Sian V ORCID: 0000-0001-5330-3177, Kaindama, Lukeki, Rowe, Will PM ORCID: 0000-0003-0384-4463, Lane, Chris R, Larkin, Lesley, Nair, Satheesh, Jenkins, Claire, de Pinna, Elizabeth M, Feasey, Nicholas A et al (show 2 more authors) , Hinton, Jay CD ORCID: 0000-0003-2671-6026 and Dallman, Timothy J (2017) Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa. GENOME MEDICINE, 9 (1). 92-.

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Vusirikala, Amoolya, Rowell, Sam, Dabke, Girija, Fox, Georgina, Bell, Jade, Manuel, Rohini, Jenkins, Claire, Love, Nicola ORCID: 0000-0003-3750-7158, McCarthy, Noel, Sumilo, Dana et al (show 1 more authors) and Balasegaram, Sooria (2024) Shedding and exclusion from childcare in children with Shiga toxin-producing <i>Escherichia coli</i>, 2018-2022. Epidemiology and infection, 152. e42-e42.

Torraca, Vincenzo, Brokatzky, Dominik, Miles, Sydney L, Chong, Charlotte E ORCID: 0000-0001-8402-3936, De Silva, P Malaka ORCID: 0000-0002-0579-0131, Baker, Stephen, Jenkins, Claire, Holt, Kathryn E, Baker, Kate S ORCID: 0000-0001-5850-1949 and Mostowy, Serge (2023) Shigella Serotypes Associated With Carriage in Humans Establish Persistent Infection in Zebrafish. JOURNAL OF INFECTIOUS DISEASES, 228 (8). pp. 1108-1118.

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Adams, Natalie, Byrne, Lisa, Rose, Tanith, Adak, Bob, Jenkins, Claire, Charlett, Andre, Violato, Mara, O'Brien, Sarah ORCID: 0000-0003-2896-8999, Whitehead, Margaret ORCID: 0000-0001-5614-6576, Barr, Benjamin ORCID: 0000-0002-4208-9475 et al (show 2 more authors) , Taylor-Robinson, David ORCID: 0000-0002-5828-7724 and Hawker, Jeremy (2019) Sociodemographic and clinical risk factors for paediatric typical haemolytic uraemic syndrome: retrospective cohort study. BMJ PAEDIATRICS OPEN, 3 (1). e000465-.

Buczkowska, Matylda, Jenkins, Claire, Hawker, Jeremy, Hungerford, Daniel ORCID: 0000-0002-9770-0163, Katwa, Parisha, Kirkbride, Hilary and Byrne, Lisa (2023) Socioeconomic and ethnic inequalities in incidence and severity of enteric fever in England 2015-2019: analysis of a national enhanced surveillance system. EPIDEMIOLOGY AND INFECTION, 151. e29-.

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Baker, Kate S ORCID: 0000-0001-5850-1949, Dallman, Timothy J, Behar, Adi, Weill, Francois-Xavier, Gouali, Malika, Sobel, Jeremy, Fookes, Maria, Valinsky, Lea, Gal-Mor, Ohad, Connor, Thomas R et al (show 6 more authors) , Nissan, Israel, Bertrand, Sophie, Parkhill, Julian, Jenkins, Claire, Cohen, Dani and Thomson, Nicholas R (2016) Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities. EMERGING INFECTIOUS DISEASES, 22 (9). pp. 1545-1553.

Rew, Vanessa, Mook, Piers, Trienekens, Suzan, Baker, Kate S ORCID: 0000-0001-5850-1949, Dallman, Timothy J, Jenkins, Claire, Crook, Paul D and Thomson, Nicholas R (2018) Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of <i>Shigella sonnei</i> from Israel. MICROBIAL GENOMICS, 4 (3). e000170-.

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Mason, Lewis CE ORCID: 0000-0001-5049-1352, Greig, David R, Cowley, Lauren A, Partridge, Sally R, Martinez, Elena, Blackwell, Grace A, Chong, Charlotte E ORCID: 0000-0001-8402-3936, De Silva, P Malaka ORCID: 0000-0002-0579-0131, Bengtsson, Rebecca J, Draper, Jenny L et al (show 13 more authors) , Ginn, Andrew N, Sandaradura, Indy, Sim, Eby M, Iredell, Jonathan R, Sintchenko, Vitali, Ingle, Danielle J, Howden, Benjamin P, Lefevre, Sophie, Njamkepo, Elisabeth, Weill, Francois-Xavier, Ceyssens, Pieter-Jan, Jenkins, Claire and Baker, Kate S ORCID: 0000-0001-5850-1949 (2023) The evolution and international spread of extensively drug resistant <i>Shigella sonnei</i> (vol 14, 1983, 2023). NATURE COMMUNICATIONS, 14 (1). 2302-.

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Mason, Lewis CE ORCID: 0000-0001-5049-1352, Greig, David R, Cowley, Lauren A, Partridge, Sally R, Martinez, Elena, Blackwell, Grace A, Chong, Charlotte E ORCID: 0000-0001-8402-3936, De Silva, P Malaka ORCID: 0000-0002-0579-0131, Bengtsson, Rebecca J, Draper, Jenny L et al (show 13 more authors) , Ginn, Andrew N, Sandaradura, Indy, Sim, Eby M, Iredell, Jonathan R, Sintchenko, Vitali, Ingle, Danielle J, Howden, Benjamin P, Lefèvre, Sophie, Njampeko, Elisabeth, Weill, François-Xavier, Ceyssens, Pieter-Jan, Jenkins, Claire and Baker, Kate S ORCID: 0000-0001-5850-1949 (2023) The evolution and international spread of extensively drug resistant Shigella sonnei. Nature communications, 14 (1). p. 1983.

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Bengtsson, Rebecca J, Baker, Kate S ORCID: 0000-0001-5850-1949, Cunningham, Andrew A ORCID: 0000-0002-3543-6504, Greig, David R ORCID: 0000-0001-9436-067X, John, Shinto K, Macgregor, Shaheed K, Seilern-Moy, Katharina, Spiro, Simon, Chong, Charlotte C, De Silva, P Malaka ORCID: 0000-0002-0579-0131 et al (show 2 more authors) , Jenkins, Claire and Lawson, Becki (2023) The genomic epidemiology of Escherichia albertii infecting humans and birds in Great Britain. Nature communications, 14 (1). 1707-.

Baker, Kate S ORCID: 0000-0001-5850-1949, Dallman, Timothy J, Thomson, Nicholas R and Jenkins, Claire (2018) An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men. MICROBIAL GENOMICS, 4 (7). e000181-.

Elson, Richard, Grace, Katherine, Vivancos, Roberto, Jenkins, Claire, Adak, Goutam K, O'Brien, Sarah J ORCID: 0000-0003-2896-8999 and Lake, Lain R (2018) A spatial and temporal analysis of risk factors associated with sporadic Shiga toxin-producing <i>Escherichia coli</i> O157 infection in England between 2009 and 2015. EPIDEMIOLOGY AND INFECTION, 146 (15). pp. 1928-1939.

Malaka De Silva, P, Stenhouse, George E, Blackwell, Grace A, Bengtsson, Rebecca J, Jenkins, Claire, Hall, James PJ ORCID: 0000-0002-4896-4592 and Baker, Kate S ORCID: 0000-0001-5850-1949 (2022) A tale of two plasmids: contributions of plasmid associated phenotypes to epidemiological success among Shigella. Proceedings. Biological sciences, 289 (1980). p. 20220581.