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Millan, Claudia, Keegan, Ronan M, Pereira, Joana, Sammito, Massimo D, Simpkin, Adam J, McCoy, Airlie J, Lupas, Andrei N, Hartmann, Marcus D, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Read, Randy J (2021) Assessing the utility of CASP14 models for molecular replacement. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 89 (12). pp. 1752-1769.

Rodriguez, Filomeno Sanchez, Mesdaghi, Shahram, Simpkin, Adam J, Burgos-Marmol, J Javier, Murphy, David L, Uski, Ville, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2021) ConPlot: web-based application for the visualization of protein contact maps integrated with other data. BIOINFORMATICS, 37 (17). 2763 - 2765.

Sánchez Rodríguez, Filomeno, Mesdaghi, Shahram, Simpkin, Adam J, Burgos-Mármol, J Javier, Murphy, David L, Uski, Ville, Keegan, Ronan M and Rigden, Daniel J (2021) ConPlot: web-based application for the visualization of protein contact maps integrated with other data. Bioinformatics (Oxford, England), 37 (17). 2763 - 2765.

Zhang, Jin, Fan, Fei, Zhao, Yanhe, Sun, Lifang, Liu, Yadan, Keegan, Ronan M, Isupov, Michail N and Wu, Yunkun (2017) Crystal structure of the type IV secretion system component CagX from <i>Helicobacter pylori</i>. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 73 (Pt 3). pp. 167-173.

Rigden, Daniel J ORCID: 0000-0002-7565-8937, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simkovic, Felix ORCID: 0000-0003-3430-6828, Simpkin, Adam ORCID: 0000-0003-1883-9376, Winn, Martyn D, Mayans, Olga and Keegan, Ronan M (2018) Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in <i>AMPLE</i>. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 74 (Pt 3). pp. 183-193.

Keegan, Ronan M, Bibby, Jaclyn, Thomas, Jens ORCID: 0000-0003-0277-8505, Xu, Dong, Zhang, Yang, Mayans, Olga, Winn, Martyn D and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2015) Exploring the speed and performance of molecular replacement with <i>AMPLE</i> using <i>QUARK ab initio</i> protein models. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 71 (Pt 2). pp. 338-343.

Thomas, Jens MH ORCID: 0000-0003-0277-8505, Keegan, Ronan M, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Davies, Owen R (2020) Extending the scope of coiled-coil crystal structure solution by <i>AMPLE</i> through improved <i>ab initio</i> modelling. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 76 (Pt 3). pp. 272-284.

Sanchez Rodriguez, Filomeno, Simpkin, Adam J, Davies, Owen R, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2020) Helical ensembles outperform ideal helices in molecular replacement. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 76 (Pt 10). pp. 962-970.

Pereira, Joana, Simpkin, Adam J, Hartmann, Marcus D, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Keegan, Ronan M and Lupas, Andrei N (2021) High-accuracy protein structure prediction in CASP14. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 89 (12). pp. 1687-1699.

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Hewetson, Aveline, Khan, Nazmul H, Dominguez, Matthew J, Do, Hoa Quynh, Kusko, RE, Borcik, Collin G, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Keegan, Ronan M, Sutton, R Bryan, Latham, Michael P et al (show 2 more authors) , Wylie, Benjamin J and Cornwall, Gail A (2020) Maturation of the functional mouse CRES amyloid from globular form. Proceedings of the National Academy of Sciences of the United States of America, 117 (28). pp. 16363-16372.

Simpkin, Adam J, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simkovic, Felix, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2019) Molecular replacement using structure predictions from databases. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 75 (Pt 12). pp. 1051-1062.

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Simpkin, Adam J ORCID: 0000-0003-1883-9376, Caballero, Iracema, McNicholas, Stuart, Stevenson, Kyle, Jimenez, Elisabet, Rodriguez, Filomneno Sanchez, Fando, Maria, Uski, Ville, Ballard, Charles, Chojnowski, Grzegorz et al (show 5 more authors) , Lebedev, Andrey, Krissinel, Eugene, Uson, Isabel, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Keegan, Ronan M (2023) Predicted models and <i>CCP</i>4. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 79 (Pt 9). pp. 806-819.

Keegan, Ronan M, McNicholas, Stuart J, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Simkovic, Felix ORCID: 0000-0003-3430-6828, Uski, Ville, Ballard, Charles C, Winn, Martyn D, Wilson, Keith S and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2018) Recent developments in <i>MrBUMP</i>: better search-model preparation, graphical interaction with search models, and solution improvement and assessment. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 74 (Pt 3). pp. 167-182.

Simpkin, Adam J, Winn, Martyn D, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Keegan, Ronan M (2021) Redeployment of automated MrBUMP searchmodel identification for map fitting in cryo-EM. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 77 (Pt 11). pp. 1378-1385.

Thomas, Jens MH ORCID: 0000-0003-0277-8505, Keegan, Ronan M, Bibby, Jaclyn, Winn, Martyn D, Mayans, Olga and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2015) Routine phasing of coiled-coil protein crystal structures with <i>AMPLE</i>. IUCRJ, 2 (Pt 2). pp. 198-206.

Simpkin, Adam J ORCID: 0000-0003-1883-9376, Mesdaghi, Shahram, Rodriguez, Filomeno Sanchez, Elliott, Luc, Murphy, David L, Kryshtafovych, Andriy, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2023) Tertiary structure assessment at CASP15. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 91 (12). pp. 1616-1635.

Rodriguez, Filomeno Sanchez, Chojnowski, Grzegorz, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2022) Using deep-learning predictions of inter-residue distances for model validation. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 78 (Pt 12). pp. 1412-1427.

Guo, Jingxu, Keegan, Ronan M, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Erskine, Peter T, Wood, Steve P, Li, Sheng and Cooper, Jonathan B (2021) The X-ray structure of juvenile hormone diol kinase from the silkworm <i>Bombyx mori</i>. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 77 (Pt 12). pp. 465-472.

Chojnowski, Grzegorz, Simpkin, Adam J, Leonardo, Diego A, Seifert-Davila, Wolfram, Vivas-Ruiz, Dan E, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2022) findMySequence: a neural-network-based approach for identification of unknown proteins in X-ray crystallography and cryo-EM. IUCrJ, 9 (1). pp. 86-97.

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Agirre, Jon, Atanasova, Mihaela, Bagdonas, Haroldas, Ballard, Charles B, Basle, Arnaud, Beilsten-Edmands, James, Borges, Rafael J, Brown, David G, Burgos-Marmol, J Javier ORCID: 0000-0003-1861-2657, Berrisford, John M et al (show 84 more authors) , Bond, Paul S, Caballero, Iracema, Catapano, Lucrezia, Chojnowski, Grzegorz, Cook, Atlanta G, Cowtan, Kevin D, Croll, Tristan I, Debreczeni, Judit E, Devenish, Nicholas E, Dodson, Eleanor J, Drevon, Tarik R, Emsley, Paul, Evans, Gwyndaf, Evans, Phil R, Fando, Maria, Foadi, James, Fuentes-Montero, Luis, Garman, Elspeth F, Gerstel, Markus, Gildea, Richard J, Hatti, Kaushik, Hekkelman, Maarten L, Heuser, Philipp, Hoh, Soon Wen, Hough, Michael A, Jenkins, Huw T, Jimenez, Elisabet, Joosten, Robbie P, Keegan, Ronan M, Keep, Nicholas, Krissinel, Eugene B, Kolenko, Petr, Kovalevskiy, Oleg, Lamzin, Victor S, Lawson, David M, Lebedev, Andrey A, Leslie, Andrew GW, Lohkamp, Bernhard, Long, Fei, Maly, Martin, McCoy, Airlie J, McNicholas, Stuart J, Medina, Ana, Millan, Claudia, Murray, James W, Murshudov, Garib N, Nicholls, Robert A, Noble, Martin EM, Oeffner, Robert, Pannu, Navraj S, Parkhurst, James M, Pearce, Nicholas, Pereira, Joana, Perrakis, Anastassis, Powell, Harold R, Read, Randy J, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Rochira, William, Sammito, Massimo, Rodriguez, Filomeno Sanchez, Sheldrick, George M, Shelley, Kathryn L, Simkovic, Felix, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Skubak, Pavol, Sobolev, Egor, Steiner, Roberto A, Stevenson, Kyle, Tews, Ivo, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Thorn, Andrea, Trivino Valls, Josep, Uski, Ville, Uson, Isabel, Vagin, Alexei, Velankar, Sameer, Vollmar, Melanie, Walden, Helen, Waterman, David, Wilson, Keith S, Winn, Martyn D, Winter, Graeme, Wojdyr, Marcin and Yamashita, Keitaro (2023) The <i>CCP4</i> suite: integrative software for macromolecular crystallography. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 79 (Pt 6). pp. 449-461.

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Krissinel, Eugene, Lebedev, Andrey A, Uski, Ville, Ballard, Charles B, Keegan, Ronan M, Kovalevskiy, Oleg, Nicholls, Robert A, Pannu, Navraj S, Skubak, Pavol, Berrisford, John et al (show 23 more authors) , Fando, Maria, Lohkamp, Bernhard, Wojdyr, Marcin, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Oliver, Christopher, Vonrhein, Clemens, Chojnowski, Grzegorz, Basle, Arnaud, Purkiss, Andrew, Isupov, Michail N, McNicholas, Stuart, Lowe, Edward, Trivino, Josep, Cowtan, Kevin, Agirre, Jon, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Uson, Isabel, Lamzin, Victor, Tews, Ivo, Bricogne, Gerard, Leslie, Andrew GW and Brown, David G (2022) <i>CCP</i>4 Cloud for structure determination and project management in macromolecular crystallograpny. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 78 (Pt 9). pp. 1079-1089.

Simpkin, Adam J ORCID: 0000-0003-1883-9376, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2022) <i>MrParse:</i> finding homologues in the PDB and the EBI AlphaFold database tor molecular replacement and more. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 78 (Pt 5). pp. 553-559.