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Nicholls, Samuel M, Poplawski, Radoslaw, Bull, Matthew J, Underwood, Anthony, Chapman, Michael, Abu-Dahab, Khalil, Taylor, Ben, Colquhoun, Rachel M, Rowe, Will PM, Jackson, Ben et al (show 13 more authors) , Hill, Verity, O’Toole, Áine, Rey, Sara, Southgate, Joel, Amato, Roberto, Livett, Rich, Gonçalves, Sónia, Harrison, Ewan M, Peacock, Sharon J, Aanensen, David M, Rambaut, Andrew, Connor, Thomas R and Loman, Nicholas J
(2021)
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Genome Biology, 22 (1).
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Jackson, Ben, Boni, Maciej F, Bull, Matthew J, Colleran, Amy, Colquhoun, Rachel M, Darby, Alistair C 
ORCID: 0000-0002-3786-6209, Haldenby, Sam, Hill, Verity, Lucaci, Anita, McCrone, John T et al (show 14 more authors) , Nicholls, Samuel M, O’Toole, Áine, Pacchiarini, Nicole, Poplawski, Radoslaw, Scher, Emily, Todd, Flora ORCID: 0000-0001-5293-6394, Webster, Hermione J, Whitehead, Mark ORCID: 0000-0002-0452-1511, Wierzbicki, Claudia ORCID: 0000-0001-7266-2597, Loman, Nicholas J, Connor, Thomas R, Robertson, David L, Pybus, Oliver G and Rambaut, Andrew
(2021)
Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic.
Cell, 184 (20).
5179-+.
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Nickbakhsh, Sema, Hughes, Joseph, Christofidis, Nicolaos, Griffiths, Emily, Shaaban, Sharif, Enright, Jessica, Smollett, Katherine, Nomikou, Kyriaki, Palmalux, Natasha, Tong, Lily et al (show 645 more authors) , Carmichael, Stephen, Sreenu, Vattipally B, Orton, Richard, Goldstein, Emily J, Tomb, Rachael M, Robson, Samuel C, Connor, Thomas R, Loman, Nicholas J, Golubchik, Tanya, Nunez, Rocio T Martinez, Bonsall, David, Rambaut, Andrew, Snell, Luke B, Livett, Rich, Ludden, Catherine, Corden, Sally, Nastouli, Eleni, Nebbia, Gaia, Johnston, Ian, Lythgoe, Katrina, Torok, M Estee, Goodfellow, Ian G, Prieto, Jacqui A, Saeed, Kordo, Jackson, David K, Houlihan, Catherine, Frampton, Dan, Hamilton, William L, Witney, Adam A, Bucca, Giselda, Pope, Cassie F, Moore, Catherine, Thomson, Emma C, Harrison, Ewan M, Smith, Colin P, Rogan, Fiona, Beckwith, Shaun M, Murray, Abigail, Singleton, Dawn, Eastick, Kirstine, Sheridan, Liz A, Randell, Paul, Jackson, Leigh M, Ariani, Cristina V, Gonçalves, Sónia, 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(2022)
Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning.
Scientific Reports, 12 (1).
11735-.
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Vöhringer, Harald S, Sanderson, Theo, Sinnott, Matthew, De Maio, Nicola, Nguyen, Thuy, Goater, Richard, Schwach, Frank, Harrison, Ian, Hellewell, Joel, Ariani, Cristina V et al (show 923 more authors) , Gonçalves, Sonia, Jackson, David K, Johnston, Ian, Jung, Alexander W, Saint, Callum, Sillitoe, John, Suciu, Maria, Goldman, Nick, Panovska-Griffiths, Jasmina, Abnizova, Irina, Aigrain, Louise, Alderton, Alex, Ali, Mozam, Allen, Laura, Amato, Roberto, Anderson, Ralph, Ariani, Cristina, Austin-Guest, Siobhan, Bala, Sendu, Barrett, Jeffrey, Bassett, Andrew, Battleday, Kristina, Beal, James, Beale, Mathew, Beaver, Charlotte, Bellany, Sam, Bellerby, Tristram, Bellis, Katie, Berger, Duncan, Berriman, Matt, Betteridge, Emma, Bevan, Paul, Binley, Simon, Bishop, Jason, Blackburn, Kirsty, Bonfield, James, Boughton, Nick, Bowker, Sam, Brendler-Spaeth, Timothy, Bronner, Iraad, Brooklyn, Tanya, Buddenborg, Sarah Kay, Bush, Robert, Caetano, Catarina, Cagan, Alex, Carter, Nicola, Cartwright, Joanna, 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(2021)
Genomic reconstruction of the SARS-CoV-2 epidemic in England.
Nature, 600 (7889).
pp. 506-511.
Collapse authors list.
Eales, Oliver, Page, Andrew J, de Oliveira Martins, Leonardo, Wang, Haowei, Bodinier, Barbara, Haw, David, Jonnerby, Jakob, Atchison, Christina, Robson, Samuel C, Connor, Thomas R et al (show 638 more authors) , Loman, Nicholas J, Golubchik, Tanya, Nunez, Rocio T Martinez, Bonsall, David, Rambaut, Andrew, Snell, Luke B, Livett, Rich, Ludden, Catherine, Corden, Sally, Nastouli, Eleni, Nebbia, Gaia, Johnston, Ian, Lythgoe, Katrina, Torok, M Estee, Goodfellow, Ian G, Prieto, Jacqui A, Saeed, Kordo, Jackson, David K, Houlihan, Catherine, Frampton, Dan, Hamilton, William L, Witney, Adam A, Bucca, Giselda, Pope, Cassie F, Moore, Catherine, Thomson, Emma C, Harrison, Ewan M, Smith, Colin P, Rogan, Fiona, Beckwith, Shaun M, Murray, Abigail, Singleton, Dawn, Eastick, Kirstine, Sheridan, Liz A, Randell, Paul, Jackson, Leigh M, Ariani, Cristina V, Gonçalves, Sónia, Fairley, Derek J, Loose, Matthew W, Watkins, Joanne, Moses, Samuel, Nicholls, Sam, Bull, Matthew, Amato, Roberto, Smith, Darren L, 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(2022)
SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2.
BMC Infectious Diseases, 22 (1).
647-.
Collapse authors list.
Kraemer, Moritz UG, Hill, Verity, Ruis, Christopher, Dellicour, Simon, Bajaj, Sumali, McCrone, John T, Baele, Guy, Parag, Kris V, Battle, Anya Lindström, Gutierrez, Bernardo et al (show 14 more authors) , Jackson, Ben, Colquhoun, Rachel, O’Toole, Áine, Klein, Brennan, Vespignani, Alessandro, Volz, Erik, Faria, Nuno R, Aanensen, David M, Loman, Nicholas J, du Plessis, Louis, Cauchemez, Simon, Rambaut, Andrew, Scarpino, Samuel V and Pybus, Oliver G
(2021)
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence.
Science, 373 (6557).
pp. 889-895.