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Boshier, Florencia AT, Venturini, Cristina, Stirrup, Oliver, Guerra-Assunção, José Afonso, Alcolea-Medina, Adela, Becket, Angela H, Byott, Matthew, Charalampous, Themoula, Filipe, Ana da Silva, Frampton, Dan et al (show 35 more authors) , Glaysher, Sharon, Khan, Tabassum, Kulasegara-Shylini, Raghavendran, Kele, Beatrix, Monahan, Irene M, Mollett, Guy, Parker, Matthew, Pelosi, Emanuela, Randell, Paul, Roy, Sunando, Taylor, Joshua F, Weller, Sophie J, Wilson-Davies, Eleri, Wade, Phillip, Williams, Rachel, Copas, Andrew J, Cutino-Moguel, Teresa, Freemantle, Nick, Hayward, Andrew C, Holmes, Alison ORCID: 0000-0001-5554-5743, Hughes, Joseph, Mahungu, Tabitha W, Nebbia, Gaia, Nastouli, Eleni, Partridge, David G, Pope, Cassie F, Price, James R, Robson, Samuel C, Saeed, Kordo, Shin, Gee Yen, de Silva, Thushan I, Snell, Luke B, Thomson, Emma C, Witney, Adam A and Breuer, Judith (2021) The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study. Journal of Infection, 83 (6). pp. 693-700.

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Stirrup, Oliver, Blackstone, James, Mapp, Fiona, MacNeil, Alyson, Panca, Monica, Holmes, Alison ORCID: 0000-0001-5554-5743, Machin, Nicholas, Shin, Gee Yen, Mahungu, Tabitha, Saeed, Kordo et al (show 39 more authors) , Saluja, Tranprit, Taha, Yusri, Mahida, Nikunj, Pope, Cassie, Chawla, Anu, Cutino-Moguel, Maria-Teresa, Tamuri, Asif, Williams, Rachel, Darby, Alistair ORCID: 0000-0002-3786-6209, Robertson, David L, Flaviani, Flavia, Nastouli, Eleni, Robson, Samuel, Smith, Darren, Loose, Matthew, Laing, Kenneth, Monahan, Irene, Kele, Beatrix, Haldenby, Sam, George, Ryan, Bashton, Matthew, Witney, Adam A, Byott, Matthew, Coll, Francesc, Chapman, Michael, Peacock, Sharon J, Hughes, Joseph, Nebbia, Gaia, Partridge, David G, Parker, Matthew, Price, James Richard, Peters, Christine, Roy, Sunando, Snell, Luke B, de, Silva Thushan I, Thomson, Emma, Flowers, Paul, Copas, Andrew and Breuer, Judith (2022) Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study. ELIFE, 11. e78427-.

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Boshier, Florencia AT, Pang, Juanita, Penner, Justin, Parker, Matthew, Alders, Nele, Bamford, Alasdair, Grandjean, Louis, Grunewald, Stephanie, Hatcher, James, Best, Timothy et al (show 10 more authors) , Dalton, Caroline, Bynoe, Patricia Dyal, Frauenfelder, Claire, Köeglmeier, Jutta, Myerson, Phoebe, Roy, Sunando, Williams, Rachel, Silva, Thushan I, Goldstein, Richard A and Breuer, Judith (2022) Evolution of viral variants in remdesivir‐treated and untreated SARS‐CoV‐2‐infected pediatrics patients. Journal of Medical Virology, 94 (1). pp. 161-172.

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Leary, Shay, Gaudieri, Silvana, Parker, Matthew, Chopra, Abha, James, Ian, Pakala, Suman, Alves, Eric, John, Mina, Lindsey, Benjamin, Keeley, Alexander et al (show 10 more authors) , Rowland-Jones, Sarah, Swanson, Maurice, Ostrov, David, Bubenik, Jodi, Das, Suman, Sidney, John, Sette, Alessandro, De Silva, Thushan, Phillips, Elizabeth and Mallal, Simon (2021) Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level. Pathogens and Immunity, 6 (2). pp. 27-49.

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Stirrup, Oliver, Hughes, Joseph, Parker, Matthew, Partridge, David G, Shepherd, James G, Blackstone, James, Coll, Francesc, Keeley, Alexander, Lindsey, Benjamin B, Marek, Aleksandra et al (show 6 more authors) , Peters, Christine, Singer, Joshua B, Tamuri, Asif, de Silva, Thushan I, Thomson, Emma C and Breuer, Judith (2021) Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data. eLife, 10. e65828-.

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Stirrup, Oliver, Boshier, Florencia, Venturini, Cristina, Guerra-Assunção, José Afonso, Alcolea-Medina, Adela, Beckett, Angela, Charalampous, Themoula, da Silva Filipe, Ana, Glaysher, Sharon, Khan, Tabassum et al (show 31 more authors) , Kulasegaran Shylini, Raghavendran, Kele, Beatrix, Monahan, Irene, Mollett, Guy, Parker, Matthew, Pelosi, Emanuela, Randell, Paul, Roy, Sunando, Taylor, Joshua, Weller, Sophie, Wilson-Davies, Eleri, Wade, Phillip, Williams, Rachel, Copas, Andrew, Cutino-Moguel, Maria-Teresa, Freemantle, Nick, Hayward, Andrew C, Holmes, Alison ORCID: 0000-0001-5554-5743, Hughes, Joseph, Mahungu, Tabitha, Nebbia, Gaia, Partridge, David, Pope, Cassie, Price, James, Robson, Samuel, Saeed, Kordo, de Silva, Thushan, Snell, Luke, Thomson, Emma, Witney, Adam A and Breuer, Judith (2021) SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study. BMJ Open Respiratory Research, 8 (1). e001029-e001029.