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Canals, Rocío ORCID: 0000-0001-7079-7690, Hammarlöf, Disa L, Kröger, Carsten, Owen, Siân V ORCID: 0000-0001-5330-3177, Fong, Wai Yee ORCID: 0000-0002-9868-6295, Lacharme-Lora, Lizeth, Zhu, Xiaojun, Wenner, Nicolas, Carden, Sarah E, Honeycutt, Jared et al (show 9 more authors)
(2019)
Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.
PLoS Biology, 17 (1).
e3000059-.
Barbitoff, Yury A, Matveenko, Andrew G, Matiiv, Anton B, Maksiutenko, Evgeniia M, Moskalenko, Svetlana E, Drozdova, Polina B, Polev, Dmitrii E, Beliavskaia, Alexandra Y ORCID: 0000-0002-1194-5689, Danilov, Lavrentii G, Predeus, Alexander V ORCID: 0000-0002-2750-1599 et al (show 1 more authors)
(2021)
Chromosome-level genome assembly and structural variant analysis of two laboratory yeast strains from the Peterhof Genetic Collection lineage.
G3-GENES GENOMES GENETICS, 11 (4).
jkab029-.
Perez-Sepulveda, Blanca M, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Fong, Wai Yee ORCID: 0000-0002-9868-6295, Parry, Christopher M, Cheesbrough, John, Wigley, Paul, Feasey, Nicholas A and Hinton, Jay CD
(2021)
Complete Genome Sequences of African <i>Salmonella enterica</i> Serovar Enteritidis Clinical Isolates Associated with Bloodstream Infection.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 10 (12).
e01452-e01420.
Lobov, Arseniy A, Danilov, Lavrentii G, Masharskiy, Alexey E, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Mikhailova, Natalia A, Granovitch, Andrei I and Maltseva, Arina L
(2022)
Data on RNA-seq analysis of the oviducts of five closely related species genus <i>Littorina</i> (Mollusca, Caenogastropoda): <i>L. saxatilis, L. arcana, L. compressa, L. obtusata, L. fabalis</i>.
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Fong, Wai Yee, Canals, Rocio, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Perez-Sepulveda, Blanca, Wenner, Nicolas, Lora, Lizeth Lacharme-, Feasey, Nicholas, Wigley, Paul and Hinton, Jay CD ORCID: 0000-0003-2671-6026
(2023)
Genome- wide fitness analysis identifies genes required for in vitro growth and macrophage infection by African and global epidemic pathovariants of Salmonella enterica Enteritidis.
MICROBIAL GENOMICS, 9 (5).
Barbitoff, Yury A, Serebryakova, Elena A, Nasykhova, Yulia A, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Polev, Dmitrii E, Shuvalova, Anna R, Vasiliev, Evgenii V, Urazov, Stanislav P, Sarana, Andrey M, Scherbak, Sergey G et al (show 7 more authors)
(2018)
Identification of Novel Candidate Markers of Type 2 Diabetes and Obesity in Russia by Exome Sequencing with a Limited Sample Size.
GENES, 9 (8).
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Powers, TuShun R, Haeberle, Amanda L, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Hammarlof, Disa L, Cundiff, Jennifer A, Saldana-Ahuactzi, Zeus, Hokamp, Karsten, Hinton, Jay CD ORCID: 0000-0003-2671-6026 and Knodler, Leigh A
(2021)
Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of <i>Salmonella enterica</i>.
PLOS PATHOGENS, 17 (8).
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Beliavskaia, Alexandra Y ORCID: 0000-0002-1194-5689, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Garushyants, Sofya K, Logacheva, Maria D, Gong, Jun, Zou, Songbao, Gelfand, Mikhail S and Rautian, Maria S
(2020)
New Intranuclear Symbiotic Bacteria from Macronucleus of <i>Paramecium putrinum</i>-"<i>Candidatus</i> Gortzia Yakutica".
DIVERSITY-BASEL, 12 (5).
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Powers, TuShun R ORCID: 0000-0003-0762-6316, Haeberle, Amanda L, Hammarlöf, Disa L ORCID: 0000-0002-8077-7615, Cundiff, Jennifer A, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Hokamp, Karsten ORCID: 0000-0001-7464-2370, Hinton, Jay CD ORCID: 0000-0003-2671-6026 and Knodler, Leigh A ORCID: 0000-0002-3028-2198
(2021)
Niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of <i>Salmonella enterica</i>.
Shikov, Anton E, Skitchenko, Rostislav K, Predeus, Alexander V ORCID: 0000-0002-2750-1599 and Barbitoff, Yury A
(2020)
Phenome-wide functional dissection of pleiotropic effects highlights key molecular pathways for human complex traits.
SCIENTIFIC REPORTS, 10 (1).
1037-.
Glotov, Andrey S, Zelenkova, Irina E, Vashukova, Elena S, Shuvalova, Anna R, Zolotareva, Alexandra D, Polev, Dmitrii E, Barbitoff, Yury A, Glotov, Oleg S, Sarana, Andrey M, Shcherbak, Sergey G et al (show 3 more authors)
(2022)
RNA Sequencing of Whole Blood Defines the Signature of High Intensity Exercise at Altitude in Elite Speed Skaters.
GENES, 13 (4).
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Lobov, Arseniy A, Babkina, Irina Y, Danilov, Lavrentii G, Masharskiy, Alexey E, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Mikhailova, Natalia A, Granovitch, Andrei I and Maltseva, Arina L
(2021)
Species-Specific Proteins in the Oviducts of Snail Sibling Species: Proteotranscriptomic Study of <i>Littorina fabalis</i> and <i>L. obtusata</i>.
BIOLOGY-BASEL, 10 (11).
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Pulford, Caisey, Perez-Sepulveda, Blanca M, Canals, Rocio, Bevington, Jessica A, Bengtsson, Rebecca J, Wenner, Nicolas, Rodwell, Ella V, Kumwenda, Benjamin, Zhu, Xioajun, Bennett, Rebecca J ORCID: 0000-0001-5290-5109 et al (show 21 more authors)
(2020)
Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa.
Nature Microbiology, 6 (3).
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Barbitoff, Yury A, Abasov, Ruslan, Tvorogova, Varvara E, Glotov, Andrey S and Predeus, Alexander V ORCID: 0000-0002-2750-1599
(2022)
Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery.
BMC GENOMICS, 23 (1).
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Barbitoff, Yury A, Polev, Dmitrii E, Glotov, Andrey S, Serebryakova, Elena A, Shcherbakova, Irina V, Kiselev, Artem M, Kostareva, Anna A, Glotov, Oleg S and Predeus, Alexander V ORCID: 0000-0002-2750-1599
(2020)
Systematic dissection of biases in whole-exome and whole-genome sequencing reveals major determinants of coding sequence coverage.
SCIENTIFIC REPORTS, 10 (1).
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Bhatia, Rama P, Kirit, Hande A, Predeus, Alexander V ORCID: 0000-0002-2750-1599 and Bollback, Jonathan P ORCID: 0000-0002-4624-4612
(2022)
Transcriptomic profiling of <i>Escherichia coli</i> K-12 in response to a compendium of stressors.
SCIENTIFIC REPORTS, 12 (1).
8788-.
Bhatia, Rama P, Kirit, Hande A, Predeus, Alexander V and Bollback, Jonathan P ORCID: 0000-0002-4624-4612
(2022)
Transcriptomic profiling of <i>Escherichia coli</i> K-12 in response to a compendium of stressors (vol 8, 8788, 2022).
SCIENTIFIC REPORTS, 12 (1).
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Glotov, Oleg S, Serebryakova, Elena A, Turkunova, Mariia E, Efimova, Olga A, Glotov, Andrey S, Barbitoff, Yury A, Nasykhova, Yulia A, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Polev, Dmitrii E, Fedyakov, Mikhail A et al (show 20 more authors)
(2019)
Whole-exome sequencing in Russian children with non-type 1 diabetes mellitus reveals a wide spectrum of genetic variants in MODY-related and unrelated genes.
MOLECULAR MEDICINE REPORTS, 20 (6).
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Barbitoff, Yury A, Skitchenko, Rostislav K, Poleshchuk, Olga I, Shikov, Anton E, Serebryakova, Elena A, Nasykhova, Yulia A, Polev, Dmitrii E, Shuvalova, Anna R, Shcherbakova, Irina V, Fedyakov, Mikhail A et al (show 3 more authors)
(2019)
Whole-exome sequencing provides insights into monogenic disease prevalence in Northwest Russia.
MOLECULAR GENETICS & GENOMIC MEDICINE, 7 (11).
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Perez-Sepulveda, Blanca M, Heavens, Darren, Pulford, Caisey V, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Low, Ross, Webster, Hermione, Dykes, Gregory F, Schudoma, Christian, Rowe, Will, Lipscombe, James et al (show 8 more authors)
(2021)
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes.
GENOME BIOLOGY, 22 (1).
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Brunke, Adam J, Hansen, Aslak K, Salnitska, Maria, Kypke, Janina L, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Escalona, Hermes, Chapados, Julie T, Eyres, Jackson, Richter, Robin, Smetana, Ales et al (show 6 more authors)
(2021)
The limits of Quediini at last (Staphylinidae: Staphylininae): a rove beetle mega-radiation resolved by comprehensive sampling and anchored phylogenomics.
SYSTEMATIC ENTOMOLOGY, 46 (2).
pp. 396-421.