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Moore, Shona C ORCID: 0000-0001-8610-2806, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Randle, Nadine ORCID: 0000-0002-3775-9585, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Hartley, Catherine, Haldenby, Sam, Dong, Xiaofeng, Alrezaihi, Abdulrahman, Almsaud, Mai et al (show 36 more authors) , Bentley, Eleanor, Clark, Jordan, Garcia-Dorival, Isabel ORCID: 0000-0002-5654-5662, Gilmore, Paul, Han, Ximeng, Jones, Benjamin, Luu, Lisa ORCID: 0000-0002-7748-5961, Sharma, Parul, Shawli, Ghada, Sun, Yani, Zhao, Qin, Pullan, Steven T, Carter, Daniel P, Bewley, Kevin, Dunning, Jake, Zhou, En-min, Solomon, Tom ORCID: 0000-0001-7266-6547, Beadsworth, Michael, Cruise, James, Crook, Derrick W, Matthews, David A, Davidson, Andrew D, Mahmood, Zana ORCID: 0000-0001-6000-6648, Aljabr, Waleed ORCID: 0000-0002-9385-2776, Druce, Julian, Vipond, Richard, Ng, Lisa ORCID: 0000-0003-4071-5222, Renia, Laurent, Openshaw, Peter JM, Baillie, J Kenneth, Carroll, Miles W, Stewart, James ORCID: 0000-0002-8928-2037, Darby, Alistair ORCID: 0000-0002-3786-6209, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance ORCID: 0000-0002-0778-1693 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2020) Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism. VIRUSES-BASEL, 12 (10). 1164-.

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Prince, Tessa ORCID: 0000-0002-8796-2629, Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Randle, Nadine ORCID: 0000-0002-3775-9585, Hartley, Catherine, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Jones, Benjamin, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Baillie, J Kenneth, Openshaw, Peter JM et al (show 9 more authors) , Turtle, Lance, Hughes, Grant L, Anderson, Enyia R, Patterson, Edward I, Druce, Julian, Screaton, Gavin, Carroll, Miles W, Stewart, James P ORCID: 0000-0002-8928-2037 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2022) Analysis of SARS-CoV-2 in Nasopharyngeal Samples from Patients with COVID-19 Illustrates Population Variation and Diverse Phenotypes, Placing the Growth Properties of Variants of Concern in Context with Other Lineages. MSPHERE, 7 (3). e0091321-.

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Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Prince, Tessa ORCID: 0000-0002-8796-2629, Randle, Nadine ORCID: 0000-0002-3775-9585, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Salguero, Francisco J, Tree, Julia, Vamos, Ecaterina, Nelson, Charlotte et al (show 11 more authors) , Clark, Jordan, Ryan, Yan, Stewart, James P ORCID: 0000-0002-8928-2037, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Baillie, J Kenneth, Openshaw, Peter JM, Turtle, Lance ORCID: 0000-0002-0778-1693, Matthews, David A, Carroll, Miles W, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2022) Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers. GIGASCIENCE, 11. giac045-.

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Khan, Asis, Fujita, Ayako Wendy, Randle, Nadine ORCID: 0000-0002-3775-9585, Regidor-Cerrillo, Javier, Shaik, Jahangheer S, Shen, Kui, Oler, Andrew J, Quinones, Mariam, Latham, Sophia M ORCID: 0000-0003-3400-1020, Akanmori, Bartholomew D et al (show 9 more authors) , Cleaveland, Sarah, Innes, Elizabeth A, Ryan, Una, Slapeta, Jan, Schares, Gereon, Ortega-Mora, Luis M, Dubey, Jitender P, Wastling, Johnathan M and Grigg, Michael E (2019) Global selective sweep of a highly inbred genome of the cattle parasite Neospora caninum. Proceedings of the National Academy of Sciences of the United States of America, 116 (45). pp. 22764-22773.

Marugan-Hernandez, Virginia, Jeremiah, Georgia, Aguiar-Martins, Kelsilandia, Burrell, Alana, Vaughan, Sue, Xia, Dong, Randle, Nadine ORCID: 0000-0002-3775-9585 and Tomley, Fiona (2020) The Growth of Eimeria tenella: Characterization and Application of Quantitative Methods to Assess Sporozoite Invasion and Endogenous Development in Cell Culture. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 10. 579833-.

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Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah, Prince, Tessa, Randle, Nadine, Salguero, Javier, Tree, Julia, Vamos, Ecaterina, Nelson, Charlotte, Stewart, James ORCID: 0000-0002-8928-2037 et al (show 10 more authors) , Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth, Openshaw, Peter, Turtle, Lance, Matthews, David, Carroll, Miles, Darby, Alistair ORCID: 0000-0002-3786-6209, Hiscox, Julian ORCID: 0000-0002-6582-0275, ISARIC4C Investigators, and COVID-19 Genomics UK (COG-UK) Consortium, (2021) Identification and quantification of SARS-CoV-2 leader subgenomic mRNA gene junctions in nasopharyngeal samples shows phasic transcription in animal models of COVID-19 and dysregulation at later time points that can also be identified in humans. bioRxiv.

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Zhou, Jie, Peacock, Thomas ORCID: 0000-0001-7077-2928, Brown, Jonathan ORCID: 0000-0001-6849-3962, Goldhill, Daniel, Elrefaey, Ahmed, Penrice-Randal, Rebekah, Cowton, Vanessa, De Lorenzo, Giuditta, Furnon, Wilhelm, Harvey, William et al (show 19 more authors) , Kugathasan, Ruthiran, Frise, Rebecca, Baillon, Laury, Lassauniere, Ria, Thakur, Nazia, Gallo, Giulia, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Dong, Xiaofeng, Randle, Nadine ORCID: 0000-0002-3775-9585, Sweeney, Fiachra, Glynn, Martha, Quantrill, Jessica, McKay, Paul, Patel, Arvind, Palmarini, Massimo, Hiscox, Julian ORCID: 0000-0002-6582-0275, Bailey, Dalan and Barclay, Wendy ORCID: 0000-0002-3948-0895 (2021) Mutations that adapt SARS-CoV-2 to mustelid hosts do not increase fitness in the human airway. Cell Rep, 38 (6). 110344-.

Luu, Lisa ORCID: 0000-0002-7748-5961, Johnston, Luke J, Derricott, Hayley, Armstrong, Stuart D ORCID: 0000-0002-3862-1801, Randle, Nadine ORCID: 0000-0002-3775-9585, Hartley, Catherine S, Duckworth, Carrie A ORCID: 0000-0001-9992-7540, Campbell, Barry J ORCID: 0000-0002-7407-012X, Wastling, Jonathan M and Coombes, Janine L ORCID: 0000-0001-5901-9951 (2019) An Open-Format Enteroid Culture System for Interrogation of Interactions Between Toxoplasma gondii and the Intestinal Epithelium. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 9 (AUG). 300-.

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Goldswain, Hannah, Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Shawli, Ghada T, Prince, Tessa ORCID: 0000-0002-8796-2629, Williamson, Maia Kavanagh, Raghwani, Jayna, Randle, Nadine ORCID: 0000-0002-3775-9585, Jones, Benjamin et al (show 20 more authors) , Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Salguero, Francisco J, Tree, Julia A, Hall, Yper, Hartley, Catherine, Erdmann, Maximilian, Bazire, James, Jearanaiwitayakul, Tuksin, Semple, Malcolm G, Openshaw, Peter JM, Baillie, J Kenneth, ISARIC4C Investigators, , Emmett, Stevan R, Digard, Paul, Matthews, David A, Turtle, Lance, Darby, Alistair C ORCID: 0000-0002-3786-6209, Davidson, Andrew D, Carroll, Miles W and Hiscox, Julian A (2023) The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection. Genome biology, 24 (1). p. 47.

Regidor-Cerrillo, Javier, Xia, Dong, Jimenez-Pelayo, Laura, Garcia-Sanchez, Marta, Collantes-Fernandez, Esther, Randle, Nadine ORCID: 0000-0002-3775-9585, Wastling, Jonathan, Ortega-Mora, Luis-Miguel and Horcajo, Pilar (2020) Proteomic Characterization of Host-Pathogen Interactions during Bovine Trophoblast Cell Line Infection by Neospora caninum. PATHOGENS, 9 (9). E749-.

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Dong, Xiaofeng, Goldswain, Hannah, Penrice-Randal, Rebekah, Shawli, Ghada, Prince, Tessa, Williamson, Maia Kavanagh, Randle, Nadine, Jones, Benjamin, Salguero, Francisco, Tree, Julia et al (show 17 more authors) , Hall, Yper, Hartley, Catherine, Erdmann, Maximilian, Bazire, James, Jearanaiwitayakul, Tuksin, Semple, Malcolm ORCID: 0000-0001-9700-0418, Openshaw, Peter, Baille, Kenneth, Emmett, Stevan, Digard, Paul, Matthews, David, Turtle, Lance, Darby, Alistair, Davidson, Andrew, Carroll, Miles, Hiscox, Julian and ISARIC4C investigators, (2021) Rapid selection of P323L in the SARS-CoV-2 polymerase (NSP12) in humans and non-human primate models and confers a large plaque phenotype. [Preprint]

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Prince, Tessa, Dong, Xiaofeng, Penrice-Randal, Rebekah, Randle, Nadine, Hartley, Catherine, Goldswain, Hannah, Jones, Benjamin ORCID: 0000-0002-5162-9357, Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth ORCID: 0000-0001-5258-793X, Openshaw, Peter ORCID: 0000-0002-7220-2555 et al (show 10 more authors) , Turtle, Lance, Hughes, Grant ORCID: 0000-0002-7567-7185, Anderson, Enyia, Patterson, Edward, Druce, Julian, Screaton, Gavin, Carroll, Miles, Stewart, James, Hiscox, Julian and ISARIC4C Investigators, (2021) Sequence analysis of SARS-CoV-2 in nasopharyngeal samples from patients with COVID-19 illustrates population variation and diverse phenotypes, placing the in vitro growth properties of B.1.1.7 and B.1.351 lineage viruses in context. [Preprint]

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Hunt, Vicky L, Tsai, Isheng J, Coghlan, Avril, Reid, Adam J, Holroyd, Nancy, Foth, Bernardo J, Tracey', Alan, Cotton', James A, Stanley, Eleanor J, Beasley, Helen et al (show 28 more authors) , Bennett, Hayley M, Brooks, Karen, Harsha, Bhavana, Kajitani, Rei, Kulkarni, Arpita, Harbecke, Dorothee, Nagayasu, Eiji, Nichol, Sarah, Ogura, Yoshitoshi, Quail, Michael A, Randle, Nadine ORCID: 0000-0002-3775-9585, Xia, Dong, Brattig, Norbert W, Soblik, Hanns, Ribeiro, Diogo M, Sanchez-Flores, Alejandro, Hayashi, Tetsuya, Itoh, Takehiko, Denver, Dee R, Grant, Warwick, Stoltzfus, Jonathan D, Lok, James B, Murayama, Haruhiko, Wastling, Jonathan, Streit, Adrian, Kikuchi, Taisei, Viney, Mark and Berriman, Matthew (2016) The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature Genetics, 48 (3). pp. 299-307.