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Millan, Claudia, Keegan, Ronan M, Pereira, Joana, Sammito, Massimo D, Simpkin, Adam J, McCoy, Airlie J, Lupas, Andrei N, Hartmann, Marcus D, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Read, Randy J (2021) Assessing the utility of CASP14 models for molecular replacement. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 89 (12). pp. 1752-1769.

Rodriguez, Filomeno Sanchez, Mesdaghi, Shahram, Simpkin, Adam J, Burgos-Marmol, J Javier, Murphy, David L, Uski, Ville, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2021) ConPlot: web-based application for the visualization of protein contact maps integrated with other data. BIOINFORMATICS, 37 (17). 2763 - 2765.

Sánchez Rodríguez, Filomeno, Mesdaghi, Shahram, Simpkin, Adam J, Burgos-Mármol, J Javier, Murphy, David L, Uski, Ville, Keegan, Ronan M and Rigden, Daniel J (2021) ConPlot: web-based application for the visualization of protein contact maps integrated with other data. Bioinformatics (Oxford, England), 37 (17). 2763 - 2765.

Simpkin, Adam J, Sanchez Rodriguez, Filomeno, Mesdaghi, Shahram, Kryshtafovych, Andriy and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2021) Evaluation of model refinement in CASP14. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 89 (12). pp. 1852-1869.

Simpkin, Adam J ORCID: 0000-0003-1883-9376 and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2016) GP0.4 from bacteriophage T7: in silico characterisation of its structure and interaction with E. coli FtsZ. BMC research notes, 9 (1). 343-.

Sanchez Rodriguez, Filomeno, Simpkin, Adam J, Davies, Owen R, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2020) Helical ensembles outperform ideal helices in molecular replacement. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 76 (Pt 10). pp. 962-970.

Pereira, Joana, Simpkin, Adam J, Hartmann, Marcus D, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Keegan, Ronan M and Lupas, Andrei N (2021) High-accuracy protein structure prediction in CASP14. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 89 (12). pp. 1687-1699.

Simpkin, Adam J, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simkovic, Felix, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2019) Molecular replacement using structure predictions from databases. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 75 (Pt 12). pp. 1051-1062.

Bengtsson, Rebecca J, Simpkin, Adam J, Pulford, Caisey V, Low, Ross, Rasko, David A, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Hall, Neil, Barry, Eileen M, Tennant, Sharon M and Baker, Kate S ORCID: 0000-0001-5850-1949 (2022) Pathogenomic analyses of Shigella isolates inform factors limiting shigellosis prevention and control across LMICs. NATURE MICROBIOLOGY, 7 (2). 251-+.

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Simpkin, Adam J ORCID: 0000-0003-1883-9376, Caballero, Iracema, McNicholas, Stuart, Stevenson, Kyle, Jimenez, Elisabet, Rodriguez, Filomneno Sanchez, Fando, Maria, Uski, Ville, Ballard, Charles, Chojnowski, Grzegorz et al (show 5 more authors) , Lebedev, Andrey, Krissinel, Eugene, Uson, Isabel, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Keegan, Ronan M (2023) Predicted models and <i>CCP</i>4. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 79 (Pt 9). pp. 806-819.

Keegan, Ronan M, McNicholas, Stuart J, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Simkovic, Felix ORCID: 0000-0003-3430-6828, Uski, Ville, Ballard, Charles C, Winn, Martyn D, Wilson, Keith S and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2018) Recent developments in <i>MrBUMP</i>: better search-model preparation, graphical interaction with search models, and solution improvement and assessment. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 74 (Pt 3). pp. 167-182.

Simpkin, Adam J, Winn, Martyn D, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Keegan, Ronan M (2021) Redeployment of automated MrBUMP searchmodel identification for map fitting in cryo-EM. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 77 (Pt 11). pp. 1378-1385.

Mesdaghi, Shahram, Murphy, David L, Simpkin, Adam J and Rigden, Daniel John ORCID: 0000-0002-7565-8937 (2023) Structural Insights into Pink-eyed Dilution Protein (Oca2). Bioscience reports, 43 (7). BSR20230060-BSR20230060.

Simpkin, Adam J ORCID: 0000-0003-1883-9376, Mesdaghi, Shahram, Rodriguez, Filomeno Sanchez, Elliott, Luc, Murphy, David L, Kryshtafovych, Andriy, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2023) Tertiary structure assessment at CASP15. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 91 (12). pp. 1616-1635.

Chojnowski, Grzegorz, Simpkin, Adam J, Leonardo, Diego A, Seifert-Davila, Wolfram, Vivas-Ruiz, Dan E, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2022) findMySequence: a neural-network-based approach for identification of unknown proteins in X-ray crystallography and cryo-EM. IUCrJ, 9 (1). pp. 86-97.

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Agirre, Jon, Atanasova, Mihaela, Bagdonas, Haroldas, Ballard, Charles B, Basle, Arnaud, Beilsten-Edmands, James, Borges, Rafael J, Brown, David G, Burgos-Marmol, J Javier ORCID: 0000-0003-1861-2657, Berrisford, John M et al (show 84 more authors) , Bond, Paul S, Caballero, Iracema, Catapano, Lucrezia, Chojnowski, Grzegorz, Cook, Atlanta G, Cowtan, Kevin D, Croll, Tristan I, Debreczeni, Judit E, Devenish, Nicholas E, Dodson, Eleanor J, Drevon, Tarik R, Emsley, Paul, Evans, Gwyndaf, Evans, Phil R, Fando, Maria, Foadi, James, Fuentes-Montero, Luis, Garman, Elspeth F, Gerstel, Markus, Gildea, Richard J, Hatti, Kaushik, Hekkelman, Maarten L, Heuser, Philipp, Hoh, Soon Wen, Hough, Michael A, Jenkins, Huw T, Jimenez, Elisabet, Joosten, Robbie P, Keegan, Ronan M, Keep, Nicholas, Krissinel, Eugene B, Kolenko, Petr, Kovalevskiy, Oleg, Lamzin, Victor S, Lawson, David M, Lebedev, Andrey A, Leslie, Andrew GW, Lohkamp, Bernhard, Long, Fei, Maly, Martin, McCoy, Airlie J, McNicholas, Stuart J, Medina, Ana, Millan, Claudia, Murray, James W, Murshudov, Garib N, Nicholls, Robert A, Noble, Martin EM, Oeffner, Robert, Pannu, Navraj S, Parkhurst, James M, Pearce, Nicholas, Pereira, Joana, Perrakis, Anastassis, Powell, Harold R, Read, Randy J, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Rochira, William, Sammito, Massimo, Rodriguez, Filomeno Sanchez, Sheldrick, George M, Shelley, Kathryn L, Simkovic, Felix, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Skubak, Pavol, Sobolev, Egor, Steiner, Roberto A, Stevenson, Kyle, Tews, Ivo, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Thorn, Andrea, Trivino Valls, Josep, Uski, Ville, Uson, Isabel, Vagin, Alexei, Velankar, Sameer, Vollmar, Melanie, Walden, Helen, Waterman, David, Wilson, Keith S, Winn, Martyn D, Winter, Graeme, Wojdyr, Marcin and Yamashita, Keitaro (2023) The <i>CCP4</i> suite: integrative software for macromolecular crystallography. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 79 (Pt 6). pp. 449-461.

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Krissinel, Eugene, Lebedev, Andrey A, Uski, Ville, Ballard, Charles B, Keegan, Ronan M, Kovalevskiy, Oleg, Nicholls, Robert A, Pannu, Navraj S, Skubak, Pavol, Berrisford, John et al (show 23 more authors) , Fando, Maria, Lohkamp, Bernhard, Wojdyr, Marcin, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Oliver, Christopher, Vonrhein, Clemens, Chojnowski, Grzegorz, Basle, Arnaud, Purkiss, Andrew, Isupov, Michail N, McNicholas, Stuart, Lowe, Edward, Trivino, Josep, Cowtan, Kevin, Agirre, Jon, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Uson, Isabel, Lamzin, Victor, Tews, Ivo, Bricogne, Gerard, Leslie, Andrew GW and Brown, David G (2022) <i>CCP</i>4 Cloud for structure determination and project management in macromolecular crystallograpny. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 78 (Pt 9). pp. 1079-1089.

Simpkin, Adam J ORCID: 0000-0003-1883-9376, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2022) <i>MrParse:</i> finding homologues in the PDB and the EBI AlphaFold database tor molecular replacement and more. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 78 (Pt 5). pp. 553-559.