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Number of items: 23.


Song, Zitao, Huang, Daiyun, Song, Bowen, Chen, Kunqi, Song, Yiyou, Liu, Gang, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X
(2021) Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications. NATURE COMMUNICATIONS, 12 (1). 4011-.


Liu, Lian, Song, Bowen, Ma, Jiani, Song, Yi, Zhang, Song-Yao, Tang, Yujiao, Wu, Xiangyu, Wei, Zhen, Chen, Kunqi, Su, Jionglong
et al (show 10 more authors) (2020) Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 18. pp. 1587-1604.


Song, Bowen, Chen, Kunqi, Tang, Yujiao, Wei, Zhen, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X
(2021) ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome. BRIEFINGS IN BIOINFORMATICS, 22 (6). bbab088-.


Tang, Yujiao, Chen, Kunqi, Wu, Xiangyu, Wei, Zhen, Zhang, Song-Yao, Song, Bowen, Zhang, Shao-Wu, Huang, Yufei and Meng, Jia ORCID: 0000-0003-3455-205X
(2019) DRUM: Inference of Disease-Associated m(6)A RNA Methylation Sites From a Multi-Layer Heterogeneous Network. FRONTIERS IN GENETICS, 10 (APR). 266-.


Zhang, Yuxin, Jiang, Jie, Ma, Jiongming, Wei, Zhen, Wang, Yue, Song, Bowen, Meng, Jia ORCID: 0000-0003-3455-205X, Jia, Guifang, de Magalhães, João Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937
et al (show 2 more authors) (2022) DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology. Nucleic acids research, 51 (D1). gkac1061-gkac1061.


Huang, Daiyun, Chen, Kunqi, Song, Bowen, Wei, Zhen, Su, Jionglong, Coenen, Frans ORCID: 0000-0003-1026-6649, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X
(2022) Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation. NUCLEIC ACIDS RESEARCH, 50 (18). pp. 10290-10310.


Coenen, Frans ORCID: 0000-0003-1026-6649, Chen, Kunqi, Song, Bowen, Zhen, Wei, Huang, Daiyun, Su, Jionglong, de Magalhães, João Pedro, Rigden, Daniel and Meng, Jia
(2022) Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation. Nucleic Acids Research.


Song, Bowen
(2022) Machine learning enabled genetic and functional interpretation of the epitranscriptome. PhD thesis, University of Liverpool.


Song, Bowen, Tang, Yujiao, Wei, Zhen, Liu, Gang, Su, Jionglong, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi
(2020) PIANO: A Web Server for Pseudouridine-Site (ψ) Identification and Functional Annotation. FRONTIERS IN GENETICS, 11. 88-.


Song, Bowen, Chen, Kunqi, Tang, Yujiao, Ma, Jialin, Meng, Jia ORCID: 0000-0003-3455-205X and Wei, Zhen
(2020) PSI-MOUSE: Predicting Mouse Pseudouridine Sites From Sequence and Genome-Derived Features. EVOLUTIONARY BIOINFORMATICS, 16. 1176934320925752-.


Song, Bowen, Wang, Xuan, Liang, Zhanmin, Ma, Jiongming, Huang, Daiyun, Wang, Yue, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X, Liu, Gang
et al (show 2 more authors) (2023) RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication. NUCLEIC ACIDS RESEARCH, 51 (D1). D1388-D1396.


Chen, Kunqi, Song, Bowen, Tang, Yujiao, Wei, Zhen, Xu, Qingru, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X
(2021) RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. NUCLEIC ACIDS RESEARCH, 49 (D1). D1396-D1404.


Li, Zhirou, Mao, Jinge, Huang, Daiyun, Song, Bowen and Meng, Jia ORCID: 0000-0003-3455-205X
(2022) RNADSN: Transfer-Learning 5-Methyluridine (m<SUP>5</SUP>U) Modification on mRNAs from Common Features of tRNA. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 23 (21). 13493-.


Liu, Lian, Song, Bowen, Chen, Kunqi, Zhang, Yuxin, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Lei, Xiujuan and Wei, Zhen
(2022) WHISTLE server: A high-accuracy genomic coordinate-based machine learning platform for RNA modification prediction. METHODS, 203. pp. 378-382.


Huang, Daiyun, Song, Bowen, Wei, Jingjue, Su, Jionglong, Coenen, Frans ORCID: 0000-0003-1026-6649 and Meng, Jia ORCID: 0000-0003-3455-205X
(2021) Weakly supervised learning of RNA modifications from low-resolution epitranscriptome data. In: 29th Intelligent Systems for Molecular Biology and 20th International Society for Computational Biology (ISMB-ISCB) joint conference, England.


Liang, Zhanmin, Ye, Haokai, Ma, Jiongming, Wei, Zhen, Wang, Yue, Zhang, Yuxin, Huang, Daiyun, Song, Bowen, Meng, Jia ORCID: 0000-0003-3455-205X, Rigden, Daniel J ORCID: 0000-0002-7565-8937
et al (show 1 more authors) (2023) m(6) A-Atlas v2.0: updated resources for unraveling the N 6-methyladenosine (m(6)A) epitranscriptome among multiple species. NUCLEIC ACIDS RESEARCH. gkad691-.


Ma, Jiongming, Song, Bowen, Wei, Zhen, Huang, Daiyun, Zhang, Yuxin, Su, Jionglong, de Magalhães, João Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi
(2022) m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome. Nucleic acids research, 50 (D1). D196-D203.


Xu, Zhongxing, Wang, Xuan, Meng, Jia ORCID: 0000-0003-3455-205X, Zhang, Lin and Song, Bowen
(2023) m5U-GEPred: prediction of RNA 5-methyluridine sites based on sequence-derived and graph embedding features. Frontiers in microbiology, 14. 1277099-.


Jiang, Jie, Song, Bowen, Tang, Yujiao, Chen, Kunqi, Wei, Zhen and Meng, Jia ORCID: 0000-0003-3455-205X
(2020) m5UPred: A Web Server for the Prediction of RNA 5-Methyluridine Sites from Sequences. MOLECULAR THERAPY-NUCLEIC ACIDS, 22. pp. 742-747.


Song, Bowen, Huang, Daiyun ORCID: 0000-0002-3067-7165, Zhang, Yuxin, Wei, Zhen, Su, Jionglong, Pedro de Magalhães, João, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi ORCID: 0000-0002-6025-8957
(2022) m6A-TSHub: Unveiling the Context-specific m<sup>6</sup>A Methylation and m<sup>6</sup>A-affecting Mutations in 23 Human Tissues. Genomics, proteomics & bioinformatics. S1672-0229(22)00114-0-.


Song, Bowen, Tang, Yujiao, Chen, Kunqi, Wei, Zhen, Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X
(2020) m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human. Bioinformatics, 36 (11). pp. 3528-3536.


Zhen, Di, Wu, Yuxuan, Zhang, Yuxin, Chen, Kunqi, Song, Bowen, Xu, Haiqi, Tang, Yujiao, Wei, Zhen and Meng, Jia ORCID: 0000-0003-3455-205X
(2020) m<SUP>6</SUP>A Reader: Epitranscriptome Target Prediction and Functional Characterization of <i>N</i><SUP>6</SUP>-Methyladenosine (m<SUP>6</SUP>A) Readers. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 8. 741-.


Tang, Yujiao, Chen, Kunqi, Song, Bowen, Ma, Jiongming, Wu, Xiangyu, Xu, Qingru, Wei, Zhen, Su, Jionglong, Liu, Gang, Rong, Rong
et al (show 4 more authors) (2021) m<SUP>6</SUP>A-Atlas: a comprehensive knowledgebase for unraveling the <i>N</i><SUP>6</SUP>-methyladenosine (m<SUP>6</SUP>A) epitranscriptome. NUCLEIC ACIDS RESEARCH, 49 (D1). D134-D143.

This list was generated on Sat Dec 23 11:25:20 2023 GMT.