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Thomson, Emma C, Rosen, Laura E, Shepherd, James G, Spreafico, Roberto, Filipe, Ana da Silva, Wojcechowskyj, Jason A, Davis, Chris, Piccoli, Luca, Pascall, David J, Dillen, Josh et al (show 56 more authors) , Lytras, Spyros, Czudnochowski, Nadine, Shah, Rajiv, Meury, Marcel, Jesudason, Natasha, De Marco, Anna, Li, Kathy, Bassi, Jessica, O'Toole, Aine, Pinto, Dora, Colquhoun, Rachel M, Culap, Katja, Jackson, Ben, Zatta, Fabrizia, Rambaut, Andrew, Jaconi, Stefano, Sreenu, Vattipally B, Nix, Jay, Zhang, Ivy, Jarrett, Ruth F, Glass, William G, Beltramello, Martina, Nomikou, Kyriaki, Pizzuto, Matteo, Tong, Lily, Cameroni, Elisabetta, Croll, Tristan I, Johnson, Natasha, Di Iulio, Julia, Wickenhagen, Arthur, Ceschi, Alessandro, Harbison, Aoife M, Mair, Daniel, Ferrari, Paolo, Smollett, Katherine, Sallusto, Federica, Carmichael, Stephen, Garzoni, Christian, Nichols, Jenna, Galli, Massimo, Hughes, Joseph, Riva, Agostino, Ho, Antonia, Schiuma, Marco, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Openshaw, Peter JM, Fadda, Elisa, Baillie, J Kenneth, Chodera, John D, Rihn, Suzannah J, Lycett, Samantha J, Virgin, Herbert W, Telenti, Amalio, Corti, Davide, Robertson, David L and Snell, Gyorgy (2021) Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity. CELL, 184 (5). 1171-+.

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Li, Kathy K, Woo, Y Mun, Stirrup, Oliver, Hughes, Joseph, Ho, Antonia, Filipe, Ana Da Silva, Johnson, Natasha, Smollett, Katherine, Mair, Daniel, Carmichael, Stephen et al (show 32 more authors) , Tong, Lily, Nichols, Jenna, Aranday-Cortes, Elihu, Brunker, Kirstyn, Parr, Yasmin A, Nomikou, Kyriaki, McDonald, Sarah E, Niebel, Marc, Asamaphan, Patawee, Sreenu, Vattipally B, Robertson, David L, Taggart, Aislynn, Jesudason, Natasha, Shah, Rajiv, Shepherd, James, Singer, Josh, Taylor, Alison HM, Cousland, Zoe, Price, Jonathan, Lees, Jennifer S, Jones, Timothy PW, Lopez, Carlos Varon, MacLean, Alasdair, Starinskij, Igor, Gunson, Rory, Morris, Scott TW, Thomson, Peter C, Geddes, Colin C, Traynor, Jamie P, Breuer, Judith, Thomson, Emma C and Mark, Patrick B (2021) Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units – A high risk community-hospital interface. Journal of Infection, 83 (1). pp. 96-103.

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Nickbakhsh, Sema, Hughes, Joseph, Christofidis, Nicolaos, Griffiths, Emily, Shaaban, Sharif, Enright, Jessica, Smollett, Katherine, Nomikou, Kyriaki, Palmalux, Natasha, Tong, Lily et al (show 645 more authors) , Carmichael, Stephen, Sreenu, Vattipally B, Orton, Richard, Goldstein, Emily J, Tomb, Rachael M, Robson, Samuel C, Connor, Thomas R, Loman, Nicholas J, Golubchik, Tanya, Nunez, Rocio T Martinez, Bonsall, David, Rambaut, Andrew, Snell, Luke B, Livett, Rich, Ludden, Catherine, Corden, Sally, Nastouli, Eleni, Nebbia, Gaia, Johnston, Ian, Lythgoe, Katrina, Torok, M Estee, Goodfellow, Ian G, Prieto, Jacqui A, Saeed, Kordo, Jackson, David K, Houlihan, Catherine, Frampton, Dan, Hamilton, William L, Witney, Adam A, Bucca, Giselda, Pope, Cassie F, Moore, Catherine, Thomson, Emma C, Harrison, Ewan M, Smith, Colin P, Rogan, Fiona, Beckwith, Shaun M, Murray, Abigail, Singleton, Dawn, Eastick, Kirstine, Sheridan, Liz A, Randell, Paul, Jackson, Leigh M, Ariani, Cristina V, Gonçalves, Sónia, Fairley, Derek J, Loose, Matthew W, Watkins, Joanne, Moses, Samuel, Nicholls, Sam, Bull, Matthew, Amato, Roberto, Smith, Darren L, Aanensen, David M, Barrett, Jeffrey C, Aggarwal, Dinesh, Shepherd, James G, Curran, Martin D, Parmar, Surendra, Parker, Matthew D, Williams, Catryn, Glaysher, Sharon, Underwood, Anthony P, Bashton, Matthew, Pacchiarini, Nicole, Loveson, Katie F, Byott, Matthew, Carabelli, Alessandro M, Templeton, Kate E, de Silva, Thushan I, Wang, Dennis, Langford, Cordelia F, Sillitoe, John, Gunson, Rory N, Cottrell, Simon, O’Grady, Justin, Kwiatkowski, Dominic, Lillie, Patrick J, Cortes, Nicholas, Moore, Nathan, Thomas, Claire, Burns, Phillipa J, Mahungu, Tabitha W, Liggett, Steven, Beckett, Angela H, Holden, Matthew TG, Levett, Lisa J, Osman, Husam, Hassan-Ibrahim, Mohammed O, Simpson, David A, Chand, Mrera, Gupta, Ravi K, Darby, Alistair C ORCID: 0000-0002-3786-6209, Paterson, Steve ORCID: 0000-0002-1307-2981, Pybus, Oliver G, Volz, Erik M, de Angelis, Daniela, Robertson, David L, Page, Andrew J, Martincorena, Inigo, Aigrain, Louise, Bassett, Andrew R, Wong, Nick, Taha, Yusri, Erkiert, Michelle J, Chapman, Michael H Spencer, Dewar, Rebecca, McHugh, Martin P, Mookerjee, Siddharth, Aplin, Stephen, Harvey, Matthew, Sass, Thea, Umpleby, Helen, Wheeler, Helen, McKenna, James P, Warne, Ben, Taylor, Joshua F, Chaudhry, Yasmin, Izuagbe, Rhys, Jahun, Aminu S, Young, Gregory R, McMurray, Claire, McCann, Clare M, Nelson, Andrew, Elliott, Scott, Lowe, Hannah, Price, Anna, Crown, Matthew R, Rey, Sara, Roy, Sunando, Temperton, Ben, Shaaban, Sharif, Hesketh, Andrew R, Laing, Kenneth G, Monahan, Irene M, Heaney, Judith, Pelosi, Emanuela, Silviera, Siona, Wilson-Davies, Eleri, Fryer, Helen, Adams, Helen, du Plessis, Louis, Johnson, Rob, Harvey, William T, Hughes, Joseph, Orton, Richard J, Spurgin, Lewis G, Bourgeois, Yann, Ruis, Chris, O’Toole, Áine, Gourtovaia, Marina, Sanderson, Theo, Fraser, Christophe, Edgeworth, Jonathan, Breuer, Judith, Michell, Stephen L, Todd, John A, John, Michaela, Buck, David, Gajee, Kavitha, Kay, Gemma L, Peacock, Sharon J, Heyburn, David, Kitchman, Katie, McNally, Alan, Pritchard, David T, Dervisevic, Samir, Muir, Peter, Robinson, Esther, Vipond, Barry B, Ramadan, Newara A, Jeanes, Christopher, Weldon, Danni, Catalan, Jana, Jones, Neil, da Silva Filipe, Ana, Williams, Chris, Fuchs, Marc, Miskelly, Julia, Jeffries, Aaron R, Oliver, Karen, Park, Naomi R, Ash, Amy, Koshy, Cherian, Barrow, Magdalena, Buchan, Sarah L, Mantzouratou, Anna, Clark, Gemma, Holmes, Christopher W, Campbell, Sharon, Davis, Thomas, Tan, Ngee Keong, Brown, Julianne R, Harris, Kathryn A, Kidd, Stephen P, Grant, Paul R, Xu-McCrae, Li, Cox, Alison, Madona, Pinglawathee, Pond, Marcus, Randell, Paul A, Withell, Karen T, Williams, Cheryl, Graham, Clive, Denton-Smith, Rebecca, Swindells, Emma, Turnbull, Robyn, Sloan, Tim J, Bosworth, Andrew, Hutchings, Stephanie, Pymont, Hannah M, Casey, Anna, Ratcliffe, Liz, Jones, Christopher R, Knight, Bridget A, Haque, Tanzina, Hart, Jennifer, Irish-Tavares, Dianne, Witele, Eric, Mower, Craig, Watson, Louisa K, Collins, Jennifer, Eltringham, Gary, Crudgington, Dorian, Macklin, Ben, Iturriza-Gomara, Miren, Lucaci, Anita O, McClure, Patrick C, Carlile, Matthew, Holmes, Nadine, Moore, Christopher, Storey, Nathaniel, Rooke, Stefan, Yebra, Gonzalo, Craine, Noel, Perry, Malorie, Alikhan, Nabil-Fareed, Bridgett, Stephen, Cook, Kate F, Fearn, Christopher, Goudarzi, Salman, Lyons, Ronan A, Williams, Thomas, Haldenby, Sam T, Durham, Jillian, Leonard, Steven, Davies, Robert M, Batra, Rahul, Blane, Beth, Spyer, Moira J, Smith, Perminder, Yavus, Mehmet, Williams, Rachel J, Mahanama, Adhyana IK, Samaraweera, Buddhini, Girgis, Sophia T, Hansford, Samantha E, Green, Angie, Beaver, Charlotte, Bellis, Katherine L, Dorman, Matthew J, Kay, Sally, Prestwood, Liam, Rajatileka, Shavanthi, Quick, Joshua, Poplawski, Radoslaw, Reynolds, Nicola, Mack, Andrew, Morriss, Arthur, Whalley, Thomas, Patel, Bindi, Georgana, Iliana, Hosmillo, Myra, Pinckert, Malte L, Stockton, Joanne, Henderson, John H, Hollis, Amy, Stanley, William, Yew, Wen C, Myers, Richard, Thornton, Alicia, Adams, Alexander, Annett, Tara, Asad, Hibo, Birchley, Alec, Coombes, Jason, Evans, Johnathan M, Fina, Laia, Gatica-Wilcox, Bree, Gilbert, Lauren, Graham, Lee, Hey, Jessica, Hilvers, Ember, Jones, Sophie, Jones, Hannah, Kumziene-Summerhayes, Sara, McKerr, Caoimhe, Powell, Jessica, Pugh, Georgia, Taylor, Sarah, Trotter, Alexander J, Williams, Charlotte A, Kermack, Leanne M, Foulkes, Benjamin H, Gallis, Marta, Hornsby, Hailey R, Louka, Stavroula F, Pohare, Manoj, Wolverson, Paige, Zhang, Peijun, MacIntyre-Cockett, George, Trebes, Amy, Moll, Robin J, Ferguson, Lynne, Goldstein, Emily J, Maclean, Alasdair, Tomb, Rachael, Starinskij, Igor, Thomson, Laura, Southgate, Joel, Kraemer, Moritz UG, Raghwani, Jayna, Zarebski, Alex E, Boyd, Olivia, Geidelberg, Lily, Illingworth, Chris J, Jackson, Chris, Pascall, David, Vattipally, Sreenu, Freeman, Timothy M, Hsu, Sharon N, Lindsey, Benjamin B, James, Keith, Lewis, Kevin, Tonkin-Hill, Gerry, Tovar-Corona, Jaime M, Cox, MacGregor, Abudahab, Khalil, Menegazzo, Mirko, Taylor, Ben EW, Yeats, Corin A, Mukaddas, Afrida, Wright, Derek W, de Oliveira Martins, Leonardo, Colquhoun, Rachel, Hill, Verity, Jackson, Ben, McCrone, JT, Medd, Nathan, Scher, Emily, Keatley, Jon-Paul, Curran, Tanya, Morgan, Sian, Maxwell, Patrick, Smith, Ken, Eldirdiri, Sahar, Kenyon, Anita, Holmes, Alison H, Price, James R, Wyatt, Tim, Mather, Alison E, SkvortsovHartley, Timofey John A, Guest, Martyn, Kitchen, Christine, Merrick, Ian, Munn, Robert, Bertolusso, Beatrice, Lynch, Jessica, Vernet, Gabrielle, Kirk, Stuart, Wastnedge, Elizabeth, Stanley, Rachael, Idle, Giles, Bradley, Declan T, Poyner, Jennifer, Mori, Matilde, Jones, Owen, Wright, Victoria, Brooks, Ellena, Churcher, Carol M, Fragakis, Mireille, Galai, Katerina, Jermy, Andrew, Judges, Sarah, McManus, Georgina M, Smith, Kim S, Westwick, Elaine, Attwood, Stephen W, Bolt, Frances, Davies, Alisha, De Lacy, Elen, Downing, Fatima, Edwards, Sue, Meadows, Lizzie, Jeremiah, Sarah, Smith, Nikki, Foulser, Luke, Charalampous, Themoula, Patel, Amita, Berry, Louise, Boswell, Tim, Fleming, Vicki M, Howson-Wells, Hannah C, Joseph, Amelia, Khakh, Manjinder, Lister, Michelle M, Bird, Paul W, Fallon, Karlie, Helmer, Thomas, McMurray, Claire L, Odedra, Mina, Shaw, Jessica, Tang, Julian W, Willford, Nicholas J, Blakey, Victoria, Raviprakash, Veena, Sheriff, Nicola, Williams, Lesley-Anne, Feltwell, Theresa, Bedford, Luke, Cargill, James S, Hughes, Warwick, Moore, Jonathan, Stonehouse, Susanne, Atkinson, Laura, Lee, Jack CD, Shah, Divya, Alcolea-Medina, Adela, Ohemeng-Kumi, Natasha, Ramble, John, Sehmi, Jasveen, Williams, Rebecca, Chatterton, Wendy, Pusok, Monika, Everson, William, Castigador, Anibolina, Macnaughton, Emily, El Bouzidi, Kate, Lampejo, Temi, Sudhanva, Malur, Breen, Cassie, Sluga, Graciela, Ahmad, Shazaad SY, George, Ryan P, Machin, Nicholas W, Binns, Debbie, James, Victoria, Blacow, Rachel, Coupland, Lindsay, Smith, Louise, Barton, Edward, Padgett, Debra, Scott, Garren, Cross, Aidan, Mirfenderesky, Mariyam, Greenaway, Jane, Cole, Kevin, Clarke, Phillip, Duckworth, Nichola, Walsh, Sarah, Bicknell, Kelly, Impey, Robert, Wyllie, Sarah, Hopes, Richard, Bishop, Chloe, Chalker, Vicki, Harrison, Ian, Gifford, Laura, Molnar, Zoltan, Auckland, Cressida, Evans, Cariad, Johnson, Kate, Partridge, David G, Raza, Mohammad, Baker, Paul, Bonner, Stephen, Essex, Sarah, Murray, Leanne J, Lawton, Andrew I, Burton-Fanning, Shirelle, Payne, Brendan AI, Waugh, Sheila, Gomes, Andrea N, Kimuli, Maimuna, Murray, Darren R, Ashfield, Paula, Dobie, Donald, Ashford, Fiona, Best, Angus, Crawford, Liam, Cumley, Nicola, Mayhew, Megan, Megram, Oliver, Mirza, Jeremy, Moles-Garcia, Emma, Percival, Benita, Driscoll, Megan, Ensell, Leah, Lowe, Helen L, Maftei, Laurentiu, Mondani, Matteo, Chaloner, Nicola J, Cogger, Benjamin J, Easton, Lisa J, Huckson, Hannah, Lewis, Jonathan, Lowdon, Sarah, Malone, Cassandra S, Munemo, Florence, Mutingwende, Manasa, Nicodemi, Roberto, Podplomyk, Olga, Somassa, Thomas, Beggs, Andrew, Richter, Alex, Cormie, Claire, Dias, Joana, Forrest, Sally, Higginson, Ellen E, Maes, Mailis, Young, Jamie, Davidson, Rose K, Jackson, Kathryn A, Turtle, Lance, Keeley, Alexander J, Ball, Jonathan, Byaruhanga, Timothy, Chappell, Joseph G, Dey, Jayasree, Hill, Jack D, Park, Emily J, Fanaie, Arezou, Hilson, Rachel A, Yaze, Geraldine, Lo, Stephanie, Afifi, Safiah, Beer, Robert, Maksimovic, Joshua, McCluggage, Kathryn, Spellman, Karla, Bresner, Catherine, Fuller, William, Marchbank, Angela, Workman, Trudy, Shelest, Ekaterina, Debebe, Johnny, Sang, Fei, Zamudio, Marina Escalera, Francois, Sarah, Gutierrez, Bernardo, Vasylyeva, Tetyana I, Flaviani, Flavia, Ragonnet-Cronin, Manon, Smollett, Katherine L, Broos, Alice, Mair, Daniel, Nichols, Jenna, Nomikou, Kyriaki, Tong, Lily, Tsatsani, Ioulia, O’Brien, Sarah, Rushton, Steven, Sanderson, Roy, Perkins, Jon, Cotton, Seb, Gallagher, Abbie, Allara, Elias, Pearson, Clare, Bibby, David, Dabrera, Gavin, Ellaby, Nicholas, Gallagher, Eileen, Hubb, Jonathan, Lackenby, Angie, Lee, David, Manesis, Nikos, Mbisa, Tamyo, Platt, Steven, Twohig, Katherine A, Morgan, Mari, Aydin, Alp, Baker, David J, Foster-Nyarko, Ebenezer, Prosolek, Sophie J, Rudder, Steven, Baxter, Chris, Carvalho, Sílvia F, Lavin, Deborah, Mariappan, Arun, Radulescu, Clara, Singh, Aditi, Tang, Miao, Morcrette, Helen, Bayzid, Nadua, Cotic, Marius, Balcazar, Carlos E, Gallagher, Michael D, Maloney, Daniel, Stanton, Thomas D, Williamson, Kathleen A, Manley, Robin, Michelsen, Michelle L, Sambles, Christine M, Studholme, David J, Warwick-Dugdale, Joanna, Eccles, Richard, Gemmell, Matthew, Gregory, Richard, Hughes, Margaret ORCID: 0000-0001-7251-6821, Nelson, Charlotte, Rainbow, Lucille, Vamos, Edith E, Webster, Hermione J, Whitehead, Mark ORCID: 0000-0002-0452-1511, Wierzbicki, Claudia, Angyal, Adrienn, Green, Luke R, Whiteley, Max, Betteridge, Emma, Bronner, Iraad F, Farr, Ben W, Goodwin, Scott, Lensing, Stefanie V, McCarthy, Shane A, Quail, Michael A, Rajan, Diana, Redshaw, Nicholas M, Scott, Carol, Shirley, Lesley, Thurston, Scott AJ, Rowe, Will, Gaskin, Amy, Le-Viet, Thanh, Bonfield, James, Liddle, Jennifier, Whitwham, Andrew, Templeton, Kate, Gunson, Rory N, da Silva Filipe, Ana, Milosevic, Catriona, Thomson, Emma, Robertson, David L, Holden, Matthew TG, Illingworth, Christopher JR and Smith-Palmer, Alison (2022) Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning. Scientific Reports, 12 (1). 11735-.

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Parker, Matthew D, Lindsey, Benjamin B, Leary, Shay, Gaudieri, Silvana, Chopra, Abha, Wyles, Matthew, Angyal, Adrienn, Green, Luke R, Parsons, Paul, Tucker, Rachel M et al (show 23 more authors) , Brown, Rebecca, Groves, Danielle, Johnson, Katie, Carrilero, Laura, Heffer, Joe, Partridge, David G, Evans, Cariad, Raza, Mohammad, Keeley, Alexander J, Smith, Nikki, Filipe, Ana Da Silva, Shepherd, James G, Davis, Chris, Bennett, Sahan, Sreenu, Vattipally B, Kohl, Alain, Aranday-Cortes, Elihu, Tong, Lily, Nichols, Jenna, Thomson, Emma C, Wang, Dennis, Mallal, Simon and de Silva, Thushan I (2021) Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data. Genome Research, 31 (4). pp. 645-658.