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Hu, Huafeng (2022) ADVANCED MEDICAL IMAGE CLASSIFICATION WITH CONVOLUTIONAL NEURAL NETWORKS. PhD thesis, University of Liverpool.

Jiang, Zhengyong (2022) The Application of Machine Learning Methods to Portfolio Management. PhD thesis, University of Liverpool.

Song, Zitao, Huang, Daiyun, Song, Bowen, Chen, Kunqi, Song, Yiyou, Liu, Gang, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications. NATURE COMMUNICATIONS, 12 (1). 4011-.

Song, Sifan, Dang, Kang, Yu, Qinji, Wang, Zilong, Coenen, Frans ORCID: 0000-0003-1026-6649, Su, Jionglong and Ding, Xiaowei (2022) BILATERAL-VIT FOR ROBUST FOVEA LOCALIZATION. In: 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), 2022-3-28 - 2022-3-31.

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Liu, Lian, Song, Bowen, Ma, Jiani, Song, Yi, Zhang, Song-Yao, Tang, Yujiao, Wu, Xiangyu, Wei, Zhen, Chen, Kunqi, Su, Jionglong et al (show 10 more authors) , Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Zhang, Lin, Zhang, Shao-Wu, Huang, Yufei, Lei, Xiujuan, Liu, Hui and Meng, Jia ORCID: 0000-0003-3455-205X (2020) Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 18. pp. 1587-1604.

Song, Bowen, Chen, Kunqi, Tang, Yujiao, Wei, Zhen, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome. BRIEFINGS IN BIOINFORMATICS, 22 (6). bbab088-.

Huang, Daiyun (2022) DEEP LEARNING-BASED RNA MODIFICATION PREDICTION METHOD DEVELOPMENT. PhD thesis, University of Liverpool.

Wang, Chengyu, Yu, Limin, Su, Jionglong, Mahy, Trevor, Selis, Valerio ORCID: 0000-0002-1856-4707, Yang, Chunxiao and Ma, Fei ORCID: 0000-0001-6099-480X (2023) Down Syndrome detection with Swin Transformer architecture. BIOMEDICAL SIGNAL PROCESSING AND CONTROL, 86. p. 105199.

Lin, Shengzhao, Su, Jionglong, Song, Sifan and Zhang, Jiaming (2021) An Event-Triggered Low-Cost Tactile Perception System for Social Robot's Whole Body Interaction. IEEE ACCESS, 9. pp. 80986-80995.

Wang, Chengyu, Yu, Limin, Zhu, Xu ORCID: 0000-0002-7371-4595, Su, Jionglong and Ma, Fei ORCID: 0000-0001-6099-480X (2020) Extended ResNet and Label Feature Vector Based Chromosome Classification. IEEE Access, 8. pp. 201098-201108.

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Wan, Guobin, Deng, Fuhao, Jiang, Zijian, Song, Sifan ORCID: 0000-0002-7940-650X, Hu, Di, Chen, Lifu, Wang, Haibo, Li, Miaochun, Chen, Gong, Yan, Ting et al (show 2 more authors) , Su, Jionglong and Zhang, Jiaming (2022) FECTS: A Facial Emotion Cognition and Training System for Chinese Children with Autism Spectrum Disorder. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE, 2022. 9213526-.

Gong, Haoyan, Su, Jionglong, Seng, Kah Phooi, Nguyen, Anh ORCID: 0000-0002-1449-211X, Liu, Ao and Liu, Hongbin ORCID: 0000-0002-7398-9193 (2023) Film-GAN: towards realistic analog film photo generation. Neural Computing and Applications.

Coenen, Frans ORCID: 0000-0003-1026-6649, Wang, Yining, Song, Zitao, Qian, Pin, Song, Sifan, Jiang, Zhengyong and Su, Jionglong (2022) From Deterministic to Stochastic: An Interpretable Stochastic Model-free Reinforcement Learning Framework for Portfolio Optimization. Applied Intelligence, 53 (12). pp. 15188-15203.

Huang, Daiyun, Chen, Kunqi, Song, Bowen, Wei, Zhen, Su, Jionglong, Coenen, Frans ORCID: 0000-0003-1026-6649, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2022) Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation. NUCLEIC ACIDS RESEARCH, 50 (18). pp. 10290-10310.

Coenen, Frans ORCID: 0000-0003-1026-6649, Chen, Kunqi, Song, Bowen, Zhen, Wei, Huang, Daiyun, Su, Jionglong, de Magalhães, João Pedro, Rigden, Daniel and Meng, Jia (2022) Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation. Nucleic Acids Research.

Li, Zhihao, Mu, Yishan, Sun, Zhenglong, Song, Sifan, Su, Jionglong and Zhang, Jiaming (2021) Intention Understanding in Human-Robot Interaction Based on Visual-NLP Semantics. FRONTIERS IN NEUROROBOTICS, 14. 610139-.

Song, Bowen (2022) Machine learning enabled genetic and functional interpretation of the epitranscriptome. PhD thesis, University of Liverpool.

Wang, Yue, Chen, Kunqi, Wei, Zhen, Coenen, Frans ORCID: 0000-0003-1026-6649, Su, Jionglong and Meng, Jia ORCID: 0000-0003-3455-205X (2021) MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis. BIOINFORMATICS, 37 (9). pp. 1285-1291.

Song, Sifan ORCID: 0000-0002-7940-650X, Bai, Tianming, Zhao, Yanxin, Zhang, Wenbo, Yang, Chunxiao, Meng, Jia ORCID: 0000-0003-3455-205X, Ma, Fei ORCID: 0000-0001-6099-480X and Su, Jionglong (2021) A New Convolutional Neural Network Architecture for Automatic Segmentation of Overlapping Human Chromosomes. NEURAL PROCESSING LETTERS, 54 (1). pp. 285-301.

Song, Sifan, Huang, Daiyun, Hu, Yalun, Yang, Chunxiao, Meng, Jia ORCID: 0000-0003-3455-205X, Ma, Fei ORCID: 0000-0001-6099-480X, Coenen, Frans ORCID: 0000-0003-1026-6649, Zhang, Jiaming and Su, Jionglong (2021) A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image. In: 2021 14th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI), 2021-10-23 - 2021-10-25.

Song, Bowen, Tang, Yujiao, Wei, Zhen, Liu, Gang, Su, Jionglong, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi (2020) PIANO: A Web Server for Pseudouridine-Site (ψ) Identification and Functional Annotation. FRONTIERS IN GENETICS, 11. 88-.

Xue, Hao, Wei, Zhen, Chen, Kunqi, Tang, Yujiao, Wu, Xiangyu, Su, Jionglong and Meng, Jia ORCID: 0000-0003-3455-205X (2020) Prediction of RNA Methylation Status From Gene Expression Data Using Classification and Regression Methods. EVOLUTIONARY BIOINFORMATICS, 16. pp. 1-5.

Chen, Kunqi, Song, Bowen, Tang, Yujiao, Wei, Zhen, Xu, Qingru, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. NUCLEIC ACIDS RESEARCH, 49 (D1). D1396-D1404.

Coenen, Frans ORCID: 0000-0003-1026-6649, Wang, Yue, Meng, Jia ORCID: 0000-0003-3455-205X, Wei, Zhen and Su, Jionglong (2023) RgnTX: colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity. Computational and Structural Biotechnology Journal, 21. pp. 4110-4117.

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Song, Sifan, Wang, Jinfeng, Cheng, Fengrui, Cao, Qirui, Zuo, Yihan, Lei, Yongteng, Yang, Ruomai, Yang, Chunxiao, Coenen, Frans ORCID: 0000-0003-1026-6649, Meng, Jia et al (show 2 more authors) , Dang, Kang and Su, Jionglong (2023) A Robust Framework of Chromosome Straightening With Vit-Patch Gan. In: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 2023-4-18 - 2023-4-21.

Deng, Furong, Zhou, Yu, Song, Sifan, Jiang, Zijian, Chen, Lifu, Su, Jionglong, Sun, Zhenglong and Zhang, Jiaming (2021) Say What You Are Looking At: An Attention-Based Interactive System for Autistic Children. APPLIED SCIENCES-BASEL, 11 (16). p. 7426.

Wang, Yue (2023) Statistical and Deep Learning Approaches for Characterizing RNA Modification with respect to RNA Sequence, Functional Component and Gene Structure. PhD thesis, University of Liverpool.

Wang, Jinfeng, Huang, Qiming, Tang, Feilong, Meng, Jia ORCID: 0000-0003-3455-205X, Su, Jionglong and Song, Sifan ORCID: 0000-0002-7940-650X (2022) Stepwise Feature Fusion: Local Guides Global. .

Ma, Ye (2022) Text Encoding and Decoding from Global Perspectives. PhD thesis, University of Liverpool.

Coenen, Frans ORCID: 0000-0003-1026-6649, Ye, Ruijie, Hu, Huafeng, Thiyagalingam, Jeyarajan and Su, Jionglong (2023) Triple-kernel Gated Attention-based Multiple Instance Learning with Contrastive Learning for Medical Image Analysis. Applied Intelligence, 53 (17). pp. 20311-20326.

Chen, Kunqi, Wei, Zhen, Zhang, Qing, Wu, Xiangyu, Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2019) WHISTLE: a high-accuracy map of the human N<SUP>6</SUP>-methyladenosine (m<SUP>6</SUP>A) epitranscriptome predicted using a machine learning approach. NUCLEIC ACIDS RESEARCH, 47 (7). e41-.

Huang, Daiyun, Song, Bowen, Wei, Jingjue, Su, Jionglong, Coenen, Frans ORCID: 0000-0003-1026-6649 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) Weakly supervised learning of RNA modifications from low-resolution epitranscriptome data. In: 29th Intelligent Systems for Molecular Biology and 20th International Society for Computational Biology (ISMB-ISCB) joint conference, England.

Ma, Jiongming, Song, Bowen, Wei, Zhen, Huang, Daiyun, Zhang, Yuxin, Su, Jionglong, de Magalhães, João Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi (2022) m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome. Nucleic acids research, 50 (D1). D196-D203.

Song, Bowen, Huang, Daiyun ORCID: 0000-0002-3067-7165, Zhang, Yuxin, Wei, Zhen, Su, Jionglong, Pedro de Magalhães, João, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi ORCID: 0000-0002-6025-8957 (2022) m6A-TSHub: Unveiling the Context-specific m⁶A Methylation and m⁶A-affecting Mutations in 23 Human Tissues. Genomics, proteomics & bioinformatics. S1672-0229(22)00114-0-.

Wu, Xiangyu, Wei, Zhen, Chen, Kunqi, Zhang, Qing, Su, Jionglong, Liu, Hui, Zhang, Lin and Meng, Jia ORCID: 0000-0003-3455-205X (2019) m6Acomet: large-scale functional prediction of individual m<SUP>6</SUP>A RNA methylation sites from an RNA co-methylation network. BMC BIOINFORMATICS, 20 (1). 223-.

Song, Bowen, Tang, Yujiao, Chen, Kunqi, Wei, Zhen, Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2020) m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human. Bioinformatics, 36 (11). pp. 3528-3536.

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Tang, Yujiao, Chen, Kunqi, Song, Bowen, Ma, Jiongming, Wu, Xiangyu, Xu, Qingru, Wei, Zhen, Su, Jionglong, Liu, Gang, Rong, Rong et al (show 4 more authors) , Lu, Zhiliang ORCID: 0000-0002-3442-1415, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) m<SUP>6</SUP>A-Atlas: a comprehensive knowledgebase for unraveling the <i>N</i><SUP>6</SUP>-methyladenosine (m<SUP>6</SUP>A) epitranscriptome. NUCLEIC ACIDS RESEARCH, 49 (D1). D134-D143.