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Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simkovic, Felix ORCID: 0000-0003-3430-6828, Keegan, Ronan, Mayans, Olga, Zhang, Chengxin, Zhang, Yang and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2017) Approaches to ab initio molecular replacement of α-helical transmembrane proteins. Acta Crystallographica Section D: Structural Biology, 73 (12). pp. 985-996.

Simkovic, Felix ORCID: 0000-0003-3430-6828, Thomas, Jens MH ORCID: 0000-0003-0277-8505 and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2017) ConKit: a python interface to contact predictions. BIOINFORMATICS, 33 (14). pp. 2209-2211.

Rigden, Daniel J ORCID: 0000-0002-7565-8937, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simkovic, Felix ORCID: 0000-0003-3430-6828, Simpkin, Adam ORCID: 0000-0003-1883-9376, Winn, Martyn D, Mayans, Olga and Keegan, Ronan M (2018) Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in <i>AMPLE</i>. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 74 (Pt 3). pp. 183-193.

Thomas, Jens MH ORCID: 0000-0003-0277-8505, Keegan, Ronan M, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Davies, Owen R (2020) Extending the scope of coiled-coil crystal structure solution by <i>AMPLE</i> through improved <i>ab initio</i> modelling. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 76 (Pt 3). pp. 272-284.

Baumont de Oliveira, Francis J ORCID: 0000-0001-5386-2008, Ferson, Scott ORCID: 0000-0002-2613-0650, Dyer, Ronald AD, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Myers, Paul D and Gray, Nicholas G ORCID: 0000-0002-0930-4575 (2022) How High Is High Enough? Assessing Financial Risk for Vertical Farms Using Imprecise Probability. SUSTAINABILITY, 14 (9). p. 5676.

Simpkin, Adam J, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simkovic, Felix, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2019) Molecular replacement using structure predictions from databases. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 75 (Pt 12). pp. 1051-1062.

Keegan, Ronan M, McNicholas, Stuart J, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Simkovic, Felix ORCID: 0000-0003-3430-6828, Uski, Ville, Ballard, Charles C, Winn, Martyn D, Wilson, Keith S and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2018) Recent developments in <i>MrBUMP</i>: better search-model preparation, graphical interaction with search models, and solution improvement and assessment. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 74 (Pt 3). pp. 167-182.

Thomas, Jens MH ORCID: 0000-0003-0277-8505, Keegan, Ronan M, Bibby, Jaclyn, Winn, Martyn D, Mayans, Olga and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2015) Routine phasing of coiled-coil protein crystal structures with <i>AMPLE</i>. IUCRJ, 2 (Pt 2). pp. 198-206.

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Agirre, Jon, Atanasova, Mihaela, Bagdonas, Haroldas, Ballard, Charles B, Basle, Arnaud, Beilsten-Edmands, James, Borges, Rafael J, Brown, David G, Burgos-Marmol, J Javier ORCID: 0000-0003-1861-2657, Berrisford, John M et al (show 84 more authors) , Bond, Paul S, Caballero, Iracema, Catapano, Lucrezia, Chojnowski, Grzegorz, Cook, Atlanta G, Cowtan, Kevin D, Croll, Tristan I, Debreczeni, Judit E, Devenish, Nicholas E, Dodson, Eleanor J, Drevon, Tarik R, Emsley, Paul, Evans, Gwyndaf, Evans, Phil R, Fando, Maria, Foadi, James, Fuentes-Montero, Luis, Garman, Elspeth F, Gerstel, Markus, Gildea, Richard J, Hatti, Kaushik, Hekkelman, Maarten L, Heuser, Philipp, Hoh, Soon Wen, Hough, Michael A, Jenkins, Huw T, Jimenez, Elisabet, Joosten, Robbie P, Keegan, Ronan M, Keep, Nicholas, Krissinel, Eugene B, Kolenko, Petr, Kovalevskiy, Oleg, Lamzin, Victor S, Lawson, David M, Lebedev, Andrey A, Leslie, Andrew GW, Lohkamp, Bernhard, Long, Fei, Maly, Martin, McCoy, Airlie J, McNicholas, Stuart J, Medina, Ana, Millan, Claudia, Murray, James W, Murshudov, Garib N, Nicholls, Robert A, Noble, Martin EM, Oeffner, Robert, Pannu, Navraj S, Parkhurst, James M, Pearce, Nicholas, Pereira, Joana, Perrakis, Anastassis, Powell, Harold R, Read, Randy J, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Rochira, William, Sammito, Massimo, Rodriguez, Filomeno Sanchez, Sheldrick, George M, Shelley, Kathryn L, Simkovic, Felix, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Skubak, Pavol, Sobolev, Egor, Steiner, Roberto A, Stevenson, Kyle, Tews, Ivo, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Thorn, Andrea, Trivino Valls, Josep, Uski, Ville, Uson, Isabel, Vagin, Alexei, Velankar, Sameer, Vollmar, Melanie, Walden, Helen, Waterman, David, Wilson, Keith S, Winn, Martyn D, Winter, Graeme, Wojdyr, Marcin and Yamashita, Keitaro (2023) The <i>CCP4</i> suite: integrative software for macromolecular crystallography. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 79 (Pt 6). pp. 449-461.

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Krissinel, Eugene, Lebedev, Andrey A, Uski, Ville, Ballard, Charles B, Keegan, Ronan M, Kovalevskiy, Oleg, Nicholls, Robert A, Pannu, Navraj S, Skubak, Pavol, Berrisford, John et al (show 23 more authors) , Fando, Maria, Lohkamp, Bernhard, Wojdyr, Marcin, Simpkin, Adam J ORCID: 0000-0003-1883-9376, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Oliver, Christopher, Vonrhein, Clemens, Chojnowski, Grzegorz, Basle, Arnaud, Purkiss, Andrew, Isupov, Michail N, McNicholas, Stuart, Lowe, Edward, Trivino, Josep, Cowtan, Kevin, Agirre, Jon, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Uson, Isabel, Lamzin, Victor, Tews, Ivo, Bricogne, Gerard, Leslie, Andrew GW and Brown, David G (2022) <i>CCP</i>4 Cloud for structure determination and project management in macromolecular crystallograpny. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 78 (Pt 9). pp. 1079-1089.

Simpkin, Adam J ORCID: 0000-0003-1883-9376, Thomas, Jens MH ORCID: 0000-0003-0277-8505, Keegan, Ronan M and Rigden, Daniel J ORCID: 0000-0002-7565-8937 (2022) <i>MrParse:</i> finding homologues in the PDB and the EBI AlphaFold database tor molecular replacement and more. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 78 (Pt 5). pp. 553-559.