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Suarez-Esquivel, Marcela, Baker, Kate S ORCID: 0000-0001-5850-1949, Ruiz-Villalobos, Nazareth, Hernandez-Mora, Gabriela, Barquero-Calvo, Elias, Gonzalez-Barrientos, Rocio, Castillo-Zeledon, Amanda, Jimenez-Rojas, Cesar, Chacon-Diaz, Carlos, Cloeckaert, Axel et al (show 4 more authors) , Chaves-Olarte, Esteban, Thomson, Nicholas R, Moreno, Edgardo and Guzman-Verri, Caterina (2017) Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution. Genome Biology and Evolution, 9 (7). pp. 1901-1912.

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Suarez-Esquivel, Marcela, Ruiz-Villalobos, Nazareth, Castillo-Zeledon, Amanda, Jimenez-Rojas, Cesar, Roop, R Martin II, Comerci, Diego J, Barquero-Calvo, Elias, Chacon-Diaz, Carlos, Caswell, Clayton C, Baker, Kate S ORCID: 0000-0001-5850-1949 et al (show 6 more authors) , Chaves-Olarte, Esteban, Thomson, Nicholas R, Moreno, Edgardo, Letesson, Jean J, De Bolle, Xavier and Guzman-Verri, Caterina (2016) Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains. FRONTIERS IN MICROBIOLOGY, 7 (SEP). 1557-.

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Suarez-Esquivel, Marcela, Ruiz-Villalobos, Nazareth, Jimenez-Rojas, Cesar, Barquero-Calvo, Elias, Chacon-Diaz, Carlos, Viquez-Ruiz, Eunice, Rojas-Campos, Norman, Baker, Kate S ORCID: 0000-0001-5850-1949, Oviedo-Sanchez, Gerardo, Amuy, Ernesto et al (show 4 more authors) , Chaves-Olarte, Esteban, Thomson, Nicholas R, Moreno, Edgardo and Guzman-Verri, Caterina (2017) Brucella neotomae Infection in Humans, Costa Rica. EMERGING INFECTIOUS DISEASES, 23 (6). pp. 997-1000.

Lewis, Joseph M ORCID: 0000-0002-3837-5188, Mphasa, Madalitso, Banda, Rachel, Beale, Mathew A, Heinz, Eva, Mallewa, Jane, Jewell, Christopher, Faragher, Brian, Thomson, Nicholas R and Feasey, Nicholas A (2022) Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults. NATURE MICROBIOLOGY, 7 (10). 1593-+.

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Njoroge, Samuel M, Madé, Laure, von Mentzer, Astrid, Kulohoma, Benard W, Kamanu, Timothy K, Ouko, Tom T, Kiiru, John, Ward, Melissa J, Thomson, Nicholas R, Fevre, Eric ORCID: 0000-0001-8931-4986 et al (show 2 more authors) , Woolhouse, Mark and Kariuki, Samuel (2022) Draft Genome Sequence of an Enterotoxigenic Escherichia coli Strain Carrying Genes for Colonization Surface Antigen 13 and a Heat-Labile Toxin. Microbiology Resource Announcements, 11 (10). e0041622-.

Lewis, Joseph M ORCID: 0000-0002-3837-5188, Lester, Rebecca, Mphasa, Madalitso, Banda, Rachel, Edwards, Thomas, Thomson, Nicholas R and Feasey, Nicholas (2020) Emergence of carbapenemase-producing Enterobacteriaceae in Malawi. JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE, 20. pp. 225-227.

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Guzman-Verri, Caterina, Suarez-Esquivel, Marcela, Ruiz-Villalobos, Nazareth, Zygmunt, Michel S, Gonnet, Mathieu, Campos, Elena, Viquez-Ruiz, Eunice, Chacon-Diaz, Carlos, Aragon-Aranda, Beatriz, Conde-Alvarez, Raquel et al (show 7 more authors) , Moriyon, Ignacio, Maria Blasco, Jose, Munoz, Pilar M, Baker, Kate S ORCID: 0000-0001-5850-1949, Thomson, Nicholas R, Cloeckaert, Axel and Moreno, Edgardo (2019) Genetic and Phenotypic Characterization of the Etiological Agent of Canine Orchiepididymitis Smooth Brucella sp. BCCN84.3. FRONTIERS IN VETERINARY SCIENCE, 6 (JUN). 175-.

Mather, Alison E, Lawson, Becki, de Pinna, Elizabeth, Wigley, Paul, Parkhill, Julian, Thomson, Nicholas R, Page, Andrew J, Holmes, Mark A and Paterson, Gavin K (2016) Genomic Analysis of Salmonella enterica Serovar Typhimurium from Wild Passerines in England and Wales. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82 (22). pp. 6728-6735.

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Musicha, Patrick, Msefula, Chisomo L, Mather, Alison E, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cain, Amy K, Peno, Chikondi, Kallonen, Teemu, Khonga, Margaret, Denis, Brigitte, Gray, Katherine J et al (show 4 more authors) , Heyderman, Robert S, Thomson, Nicholas R, Everett, Dean B and Feasey, Nicholas A (2019) Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 74 (5). pp. 1223-1232.

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Lewis, Joseph M ORCID: 0000-0002-3837-5188, Mphasa, Madalitso, Banda, Rachel, Beale, Mathew A, Mallewa, Jane, Anscome, Catherine, Zuza, Allan, Roberts, Adam P, Heinz, Eva, Thomson, Nicholas R et al (show 1 more authors) and Feasey, Nicholas A (2023) Genomic analysis of extended-spectrum beta-lactamase (ESBL) producing <i>Escherichia coli</i> colonising adults in Blantyre, Malawi reveals previously undescribed diversity. Microbial genomics, 9 (6).

Lewis, Joseph M ORCID: 0000-0002-3837-5188, Mphasa, Madalitso, Banda, Rachel, Beale, Mathew A, Mallewa, Jane, Heinz, Eva, Thomson, Nicholas R and Feasey, Nicholas A (2022) Genomic and antigenic diversity of colonizing Klebsiella pneumoniae isolates mirrors that of invasive isolates in Blantyre, Malawi. MICROBIAL GENOMICS, 8 (3).

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Musicha, Patrick, Feasey, Nicholas A, Cain, Amy K, Kallonen, Teemu, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Peno, Chikondi, Khonga, Margaret, Thompson, Sarah, Gray, Katherine J, Mather, Alison E et al (show 4 more authors) , Heyderman, Robert S, Everett, Dean B, Thomson, Nicholas R and Msefula, Chisomo L (2017) Genomic landscape of extended-spectrum beta-lactamase resistance in Escherichia coli from an urban African setting. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 72 (6). pp. 1602-1609.

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Carey, Megan E ORCID: 0000-0002-7797-9080, Dyson, Zoe A ORCID: 0000-0002-8887-3492, Ingle, Danielle J, Amir, Afreenish, Aworh, Mabel K, Chattaway, Marie Anne, Chew, Ka Lip, Crump, John A ORCID: 0000-0002-4529-102X, Feasey, Nicholas A, Howden, Benjamin P ORCID: 0000-0003-0237-1473 et al (show 105 more authors) , Keddy, Karen H, Maes, Mailis, Parry, Christopher M ORCID: 0000-0001-7563-7282, Van Puyvelde, Sandra ORCID: 0000-0001-8434-5732, Webb, Hattie E ORCID: 0000-0002-1190-7930, Afolayan, Ayorinde Oluwatobiloba ORCID: 0000-0003-1405-2365, Alexander, Anna P, Anandan, Shalini, Andrews, Jason R ORCID: 0000-0002-5967-251X, Ashton, Philip M, Basnyat, Buddha, Bavdekar, Ashish, Bogoch, Isaac I, Clemens, John D, da Silva, Kesia Esther, De, Anuradha ORCID: 0000-0002-8701-4100, de Ligt, Joep, Diaz Guevara, Paula Lucia ORCID: 0000-0002-8252-5622, Dolecek, Christiane, Dutta, Shanta, Ehlers, Marthie M, Francois Watkins, Louise ORCID: 0000-0002-1165-1162, Garrett, Denise O, Godbole, Gauri, Gordon, Melita A, Greenhill, Andrew R, Griffin, Chelsey, Gupta, Madhu, Hendriksen, Rene S, Heyderman, Robert S, Hooda, Yogesh, Hormazabal, Juan Carlos, Ikhimiukor, Odion O ORCID: 0000-0002-3738-4584, Iqbal, Junaid ORCID: 0000-0002-5014-2176, Jacob, Jobin John, Jenkins, Claire, Jinka, Dasaratha Ramaiah ORCID: 0000-0002-8184-279X, John, Jacob, Kang, Gagandeep ORCID: 0000-0002-3656-564X, Kanteh, Abdoulie, Kapil, Arti, Karkey, Abhilasha, Kariuki, Samuel ORCID: 0000-0003-3209-9503, Kingsley, Robert A, Koshy, Roshine Mary, Lauer, AC, Levine, Myron M, Lingegowda, Ravikumar Kadahalli, Luby, Stephen P, Mackenzie, Grant Austin, Mashe, Tapfumanei, Msefula, Chisomo ORCID: 0000-0003-2304-886X, Mutreja, Ankur, Nagaraj, Geetha, Nagaraj, Savitha, Nair, Satheesh ORCID: 0000-0002-7297-1485, Naseri, Take K, Nimarota-Brown, Susana, Njamkepo, Elisabeth, Okeke, Iruka N ORCID: 0000-0002-1694-7587, Perumal, Sulochana Putli Bai, Pollard, Andrew J, Pragasam, Agila Kumari, Qadri, Firdausi, Qamar, Farah N, Rahman, Sadia Isfat Ara, Rambocus, Savitra Devi, Rasko, David A, Ray, Pallab, Robins-Browne, Roy, Rongsen-Chandola, Temsunaro, Rutanga, Jean Pierre, Saha, Samir K ORCID: 0000-0003-3820-0748, Saha, Senjuti ORCID: 0000-0001-6087-6766, Saigal, Karnika, Sajib, Mohammad Saiful Islam, Seidman, Jessica C, Shakya, Jivan, Shamanna, Varun, Shastri, Jayanthi, Shrestha, Rajeev, Sia, Sonia, Sikorski, Michael J, Singh, Ashita, Smith, Anthony M, Tagg, Kaitlin A, Tamrakar, Dipesh, Tanmoy, Arif Mohammed, Thomas, Maria, Thomas, Mathew S, Thomsen, Robert, Thomson, Nicholas R, Tupua, Siaosi, Vaidya, Krista, Valcanis, Mary, Veeraraghavan, Balaji, Weill, François-Xavier, Wright, Jackie, Dougan, Gordon, Argimón, Silvia, Keane, Jacqueline A, Aanensen, David M ORCID: 0000-0001-6688-0854, Baker, Stephen, Holt, Kathryn E ORCID: 0000-0003-3949-2471 and Global Typhoid Genomics Consortium Group Authorship, (2023) Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 <i>Salmonella</i> Typhi genomes. eLife, 12. e85867.

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Hawkey, Jane, Paranagama, Kalani, Baker, Kate S ORCID: 0000-0001-5850-1949, Bengtsson, Rebecca J, Weill, Francois-Xavier, Thomson, Nicholas R, Baker, Stephen, Cerdeira, Louise, Iqbal, Zamin, Hunt, Martin et al (show 5 more authors) , Ingle, Danielle J, Dallman, Timothy J, Jenkins, Claire, Williamson, Deborah A and Holt, Kathryn E (2021) Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei. NATURE COMMUNICATIONS, 12 (1). 2684-.

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Esson, Diane, Gupta, Srishti, Bailey, David, Wigley, Paul, Wedley, Amy ORCID: 0000-0002-4164-545X, Mather, Alison E, Meric, Guillaume, Mastroeni, Pietro, Sheppard, Samuel K, Thomson, Nicholas R et al (show 4 more authors) , Parkhill, Julian, Maskell, Duncan J, Christie, Graham and Grant, Andrew J (2017) Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape. MICROBIAL PATHOGENESIS, 104. pp. 202-211.

Behar, Adi, Baker, Kate Susan ORCID: 0000-0001-5850-1949, Bassal, Ravit, Ezernitchi, Analia, Valinsky, Lea, Thomson, Nicholas R and Cohen, Daniel (2018) Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks of Shigellosis, Israel. EMERGING INFECTIOUS DISEASES, 24 (7). pp. 1335-1339.

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Langridge, Gemma C, Fookes, Maria, Connor, Thomas R, Feltwell, Theresa, Feasey, Nicholas, Parsons, Bryony N ORCID: 0000-0003-3599-1089, Seth-Smith, Helena MB, Barquist, Lars, Stedman, Anna, Humphrey, Tom et al (show 9 more authors) , Wigley, Paul, Peters, Sarah E, Maskell, Duncan J, Corander, Jukka, Chabalgoity, Jose A, Barrow, Paul, Parkhill, Julian, Dougan, Gordon and Thomson, Nicholas R (2015) Patterns of genome evolution that have accompanied host adaptation in Salmonella. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112 (03). pp. 863-868.

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Wong, Vanessa K, Baker, Stephen, Pickard, Derek J, Parkhill, Julian, Page, Andrew J, Feasey, Nicholas A, Kingsley, Robert A, Thomson, Nicholas R, Keane, Jacqueline A, Weill, François-Xavier et al (show 64 more authors) , Edwards, David J, Hawkey, Jane, Harris, Simon R, Mather, Alison E, Cain, Amy K, Hadfield, James, Hart, Peter J, Thieu, Nga Tran Vu, Klemm, Elizabeth J, Glinos, Dafni A, Breiman, Robert F, Watson, Conall H, Kariuki, Samuel, Gordon, Melita ORCID: 0000-0002-0629-0884, Heyderman, Robert S, Okoro, Chinyere, Jacobs, Jan, Lunguya, Octavie, Edmunds, W John, Msefula, Chisomo, Chabalgoity, Jose A, Kama, Mike, Jenkins, Kylie, Dutta, Shanta, Marks, Florian, Campos, Josefina, Thompson, Corinne, Obaro, Stephen, MacLennan, Calman A, Dolecek, Christiane, Keddy, Karen H, Smith, Anthony M, Parry, Christopher M ORCID: 0000-0001-7563-7282, Karkey, Abhilasha, Mulholland, E Kim, Campbell, James I, Dongol, Sabina, Basnyat, Buddha, Dufour, Muriel, Bandaranayake, Don, Naseri, Take Toleafoa, Singh, Shalini Pravin, Hatta, Mochammad, Newton, Paul, Onsare, Robert S, Isaia, Lupeoletalalei, Dance, David, Davong, Viengmon, Thwaites, Guy, Wijedoru, Lalith, Crump, John A, De Pinna, Elizabeth, Nair, Satheesh, Nilles, Eric J, Thanh, Duy Pham, Turner, Paul, Soeng, Sona, Valcanis, Mary, Powling, Joan, Dimovski, Karolina, Hogg, Geoff, Farrar, Jeremy, Holt, Kathryn E and Dougan, Gordon (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature Genetics, 47 (06). pp. 632-639.

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Gauld, Jillian S, Olgemoeller, Franziska, Heinz, Eva, Nkhata, Rose, Bilima, Sithembile, Wailan, Alexander M, Kennedy, Neil, Mallewa, Jane, Gordon, Melita A ORCID: 0000-0002-0629-0884, Read, Jonathan M et al (show 4 more authors) , Heyderman, Robert S, Thomson, Nicholas R, Diggle, Peter J and Feasey, Nicholas A (2021) Spatial and Genomic Data to Characterize Endemic Typhoid Transmission. CLINICAL INFECTIOUS DISEASES, 74 (11). pp. 1993-2000.

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Holt, Kathryn E, Thieu Nga, Tran Vu, Thanh, Duy Pham, Vinh, Ha, Kim, Dong Wook, Vu Tra, My Phan, Campbell, James I, Hoang, Nguyen Van Minh, Vinh, Nguyen Thanh, Minh, Pham Van et al (show 20 more authors) , Thuy, Cao Thu, Nga, Tran Thi Thu, Thompson, Corinne, Dung, Tran Thi Ngoc, Nhu, Nguyen Thi Khanh, Vinh, Phat Voong, Tuyet, Pham Thi Ngoc, Phuc, Hoang Le, Lien, Nguyen Thi Nam, Phu, Bui Duc, Ai, Nguyen Thi Thuy, Tien, Nguyen Manh, Dong, Nguyen, Parry, Christopher M ORCID: 0000-0001-7563-7282, Hien, Tran Tinh, Farrar, Jeremy J, Parkhill, Julian, Dougan, Gordon, Thomson, Nicholas R and Baker, Stephen (2013) Tracking the establishment of local endemic populations of an emergent enteric pathogen. Proceedings of the National Academy of Sciences, 110 (43). pp. 17522-17527.

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Baker, Kate S ORCID: 0000-0001-5850-1949, Dallman, Timothy J, Behar, Adi, Weill, Francois-Xavier, Gouali, Malika, Sobel, Jeremy, Fookes, Maria, Valinsky, Lea, Gal-Mor, Ohad, Connor, Thomas R et al (show 6 more authors) , Nissan, Israel, Bertrand, Sophie, Parkhill, Julian, Jenkins, Claire, Cohen, Dani and Thomson, Nicholas R (2016) Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities. EMERGING INFECTIOUS DISEASES, 22 (9). pp. 1545-1553.

Rew, Vanessa, Mook, Piers, Trienekens, Suzan, Baker, Kate S ORCID: 0000-0001-5850-1949, Dallman, Timothy J, Jenkins, Claire, Crook, Paul D and Thomson, Nicholas R (2018) Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel. MICROBIAL GENOMICS, 4 (3).

Baker, Kate S ORCID: 0000-0001-5850-1949, Dallman, Timothy J, Thomson, Nicholas R and Jenkins, Claire (2018) An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men. MICROBIAL GENOMICS, 4 (7).

Njoroge, Samuel M, Boinett, Christine J, Made, Laure F, Ouko, Tom T, Fevre, Eric M ORCID: 0000-0001-8931-4986, Thomson, Nicholas R and Kariuki, Samuel (2015) A putative, novel coli surface antigen 8B (CS8B) of enterotoxigenic Escherichia coli. PATHOGENS AND DISEASE, 73 (7). ftv047-.