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Prakash, Ananth, Garcia-Seisdedos, David, Wang, Shengbo, Kundu, Deepti Jaiswal, Collins, Andrew ORCID: 0000-0003-0507-6912, George, Nancy, Moreno, Pablo, Papatheodorou, Irene, Jones, Andrew R ORCID: 0000-0001-6118-9327 and Vizcaino, Juan Antonio (2023) Integrated View of Baseline Protein Expression in Human Tissues. JOURNAL OF PROTEOME RESEARCH, 22 (3). pp. 729-742.

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Wang, Shengbo, Garcia-Seisdedos, David R, Prakash, Ananth, Kundu, Deepti Jaiswal, Collins, Andrew ORCID: 0000-0003-0507-6912, George, Nancy, Fexova, Silvie, Moreno, Pablo, Papatheodorou, Irene, Jones, Andrew ORCID: 0000-0001-6118-9327 et al (show 1 more authors) and Vizcaino, Juan Antonio (2022) Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PLOS COMPUTATIONAL BIOLOGY, 18 (6). e1010174-.

Jones, Andrew R ORCID: 0000-0001-6118-9327, Deutsch, Eric W and Vizcaino, Juan Antonio (2023) Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future. PROTEOMICS, 23 (7-8). e2200014-.

Ramsbottom, Kerry A ORCID: 0000-0002-7432-9293, Prakash, Ananth, Riverol, Yasset Perez, Camacho, Oscar Martin, Martin, Maria-Jesus, Vizcaino, Juan Antonio, Deutsch, Eric W and Jones, Andrew R ORCID: 0000-0001-6118-9327 (2022) Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. JOURNAL OF PROTEOME RESEARCH, 21 (7). pp. 1603-1615.

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Deutsch, Eric W, Vizcaino, Juan Antonio, Jones, Andrew R ORCID: 0000-0001-6118-9327, Binz, Pierre-Alain, Lam, Henry, Klein, Joshua, Bittremieux, Wout, Perez-Riverol, Yasset, Tabb, David L, Walzer, Mathias et al (show 19 more authors) , Ricard-Blum, Sylvie, Hermjakob, Henning, Neumann, Steffen, Mak, Tytus D, Kawano, Shin, Mendoza, Luis, Van Den Bossche, Tim, Gabriels, Ralf, Bandeira, Nuno, Carver, Jeremy, Pullman, Benjamin, Sun, Zhi, Hoffmann, Nils, Shofstahl, Jim, Zhu, Yunping, Licata, Luana, Quaglia, Federica, Tosatto, Silvio CE and Orchard, Sandra E (2023) Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. JOURNAL OF PROTEOME RESEARCH, 22 (2). pp. 287-301.

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Deutsch, Eric W, Orchard, Sandra, Binz, Pierre-Alain, Bittremieux, Wout, Eisenacher, Martin, Hermjakob, Henning, Kawano, Shin, Lam, Henry, Mayer, Gerhard, Menschaert, Gerben et al (show 7 more authors) , Perez-Riverol, Yasset, Salek, Reza M, Tabb, David L, Tenzer, Stefan, Vizcaino, Juan Antonio, Walzer, Mathias and Jones, Andrew R ORCID: 0000-0001-6118-9327 (2017) Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. JOURNAL OF PROTEOME RESEARCH, 16 (12). pp. 4288-4298.

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Adhikari, Subash, Nice, Edouard C, Deutsch, Eric W, Lane, Lydie, Omenn, Gilbert S, Pennington, Stephen R, Paik, Young-Ki, Overall, Christopher M, Corrales, Fernando J, Cristea, Ileana M et al (show 36 more authors) , Van Eyk, Jennifer E, Uhlen, Mathias, Lindskog, Cecilia, Chan, Daniel W, Bairoch, Amos, Waddington, James C ORCID: 0000-0003-2641-5055, Justice, Joshua L, LaBaer, Joshua, Rodriguez, Henry, He, Fuchu, Kostrzewa, Markus, Ping, Peipei, Gundry, Rebekah L, Stewart, Peter, Srivastava, Sanjeeva, Srivastava, Sudhir, Nogueira, Fabio CS, Domont, Gilberto B, Vandenbrouck, Yves, Lam, Maggie PY, Wennersten, Sara, Vizcaino, Juan Antonio, Wilkins, Marc, Schwenk, Jochen M, Lundberg, Emma, Bandeira, Nuno, Marko-Varga, Gyorgy, Weintraub, Susan T, Pineau, Charles, Kusebauch, Ulrike, Moritz, Robert L, Ahn, Seong Beom, Palmblad, Magnus, Snyder, Michael P, Aebersold, Ruedi and Baker, Mark S (2020) A high-stringency blueprint of the human proteome. NATURE COMMUNICATIONS, 11 (1). 5301-.

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Vizcaino, Juan Antonio, Mayer, Gerhard, Perkins, Simon, Barsnes, Harald, Vaudel, Marc, Perez-Riverol, Yasset, Ternent, Tobias, Uszkoreit, Julian, Eisenacher, Martin, Fischer, Lutz et al (show 10 more authors) , Rappsilber, Juri, Netz, Eugen, Walzer, Mathias, Kohlbacher, Oliver, Leitner, Alexander, Chalkley, Robert J, Ghali, Fawaz, Martinez-Bartolome, Salvador, Deutsch, Eric W and Jones, Andrew R ORCID: 0000-0001-6118-9327 (2017) The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. MOLECULAR & CELLULAR PROTEOMICS, 16 (7). pp. 1275-1285.

Menschaert, Gerben, Wang, Xiaojing, Jones, Andrew R ORCID: 0000-0001-6118-9327, Ghali, Fawaz, Fenyo, David, Olexiouk, Volodimir, Zhang, Bing, Deutsch, Eric W, Ternent, Tobias and Vizcaino, Juan Antonio (2018) The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. GENOME BIOLOGY, 19 (1). 12-.