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Liu, Lian, Song, Bowen, Ma, Jiani, Song, Yi, Zhang, Song-Yao, Tang, Yujiao, Wu, Xiangyu, Wei, Zhen, Chen, Kunqi, Su, Jionglong et al (show 10 more authors) , Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Zhang, Lin, Zhang, Shao-Wu, Huang, Yufei, Lei, Xiujuan, Liu, Hui and Meng, Jia ORCID: 0000-0003-3455-205X (2020) Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 18. pp. 1587-1604.

Tang, Yujiao, Chen, Kunqi, Wu, Xiangyu, Wei, Zhen, Zhang, Song-Yao, Song, Bowen, Zhang, Shao-Wu, Huang, Yufei and Meng, Jia ORCID: 0000-0003-3455-205X (2019) DRUM: Inference of Disease-Associated m(6)A RNA Methylation Sites From a Multi-Layer Heterogeneous Network. FRONTIERS IN GENETICS, 10 (APR). 266-.

Zhang, Song-Yao, Zhang, Shao-Wu, Fan, Xiao-Nan, Meng, Jia ORCID: 0000-0003-3455-205X, Chen, Yidong, Gao, Shou-Jiang and Huang, Yufei (2019) Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods. PLOS COMPUTATIONAL BIOLOGY, 15 (1). e1006663-.

Cui, Xiaodong, Wei, Zhen, Zhang, Lin, Liu, Hui, Sun, Lei, Zhang, Shao-Wu, Huang, Yufei and Meng, Jia ORCID: 0000-0003-3455-205X (2016) Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features. BIOMED RESEARCH INTERNATIONAL, 2016. 8367534-.

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Liu, Hui, Wang, Huaizhi, Wei, Zhen, Zhang, Songyao, Hua, Gang, Zhang, Shao-Wu, Zhang, Lin, Gao, Shou-Jiang, Meng, Jia ORCID: 0000-0003-3455-205X, Chen, Xing et al (show 1 more authors) and Huang, Yufei (2018) MeT-DB V2.0: elucidating context-specific functions of N-6-methyl-adenosine methyltranscriptome. NUCLEIC ACIDS RESEARCH, 46 (D1). D281-D287.

Liu, Lian, Zhang, Shao-Wu, Huang, Yufei and Meng, Jia ORCID: 0000-0003-3455-205X (2017) QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model. BMC BIOINFORMATICS, 18 (1). 387-.

Zhang, Song-Yao, Zhang, Shao-Wu, Zhang, Teng, Fan, Xiao-Nan and Meng, Jia ORCID: 0000-0003-3455-205X (2021) Recent advances in functional annotation and prediction of the epitranscriptome. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19. pp. 3015-3026.

Zhang, Song-Yao, Zhang, Shao-Wu, Liu, Lian, Meng, Jia ORCID: 0000-0003-3455-205X and Huang, Yufei (2016) m(6)A-Driver: Identifying Context-Specific mRNA m(6)A Methylation-Driven Gene Interaction Networks. PLOS COMPUTATIONAL BIOLOGY, 12 (12). e1005287-.

Zhang, Teng, Zhang, Shao-Wu, Zhang, Lin and Meng, Jia ORCID: 0000-0003-3455-205X (2018) trumpet: transcriptome-guided quality assessment of m(6)A-seq data. BMC BIOINFORMATICS, 19 (1). 260-.