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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Yang, Marie, Cornick, Jennifer E, du Plessis, Mignon, Gladstone, Rebecca A, Kwambana-Adams, Brenda A, Lo, Stephanie W, Ebruke, Chinelo, Tonkin-Hill, Gerry, Peno, Chikondi et al (show 16 more authors) , Senghore, Madikay, Obaro, Stephen K, Ousmane, Sani, Pluschke, Gerd, Collard, Jean-Marc, Sigauque, Betuel, French, Neil ORCID: 0000-0003-4814-8293, Klugman, Keith P, Heyderman, Robert S, McGee, Lesley, Antonio, Martin, Breiman, Robert F, von Gottberg, Anne, Everett, Dean B, Kadioglu, Aras ORCID: 0000-0003-1137-6321 and Bentley, Stephen D (2020) Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. COMMUNICATIONS BIOLOGY, 3 (1). 559-.

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Bennett, Julia C, Hetrich, Marissa K, Quesada, Maria Garcia, Sinkevitch, Jenna N, Knoll, Maria Deloria, Feikin, Daniel R, Zeger, Scott L, Kagucia, Eunice W, Cohen, Adam L, Ampofo, Krow et al (show 51 more authors) , Brandileone, Maria-Cristina C, Bruden, Dana, Camilli, Romina, Castilla, Jesus, Chan, Guanhao, Cook, Heather, Cornick, Jennifer E, Dagan, Ron, Dalby, Tine, Danis, Kostas, de Miguel, Sara, De Wals, Philippe, Desmet, Stefanie, Georgakopoulou, Theano, Gilkison, Charlotte, Grgic-Vitek, Marta, Hammitt, Laura L, Hilty, Markus, Ho, Pak-Leung, Jayasinghe, Sanjay, Kellner, James D, Kleynhans, Jackie, Knol, Mirjam J, Kozakova, Jana, Kristinsson, Karl G, Ladhani, Shamez N, MacDonald, Laura, Mackenzie, Grant A, Mad'arova, Lucia, McGeer, Allison, Mereckiene, Jolita, Morfeldt, Eva, Mungun, Tuya, Munoz-Almagro, Carmen, Nuorti, J Pekka, Paragi, Metka, Pilishvili, Tamara, Puentes, Rodrigo, Saha, Samir K, Khan, Aalisha Sahu, Savrasova, Larisa, Scott, J Anthony, Skoczynska, Anna, Suga, Shigeru, van der Linden, Mark, Verani, Jennifer R, von Gottberg, Anne, Winje, Brita A, Yildirim, Inci, Zerouali, Khalid and Hayford, Kyla (2021) Changes in Invasive Pneumococcal Disease Caused by <i>Streptococcus pneumoniae</i> Serotype 1 following Introduction of PCV10 and PCV13: Findings from the PSERENADE Project. MICROORGANISMS, 9 (4). 696-.

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Lo, Stephanie W, Mellor, Kate, Cohen, Robert, Alonso, Alba Redin, Belman, Sophie, Kumar, Narender, Hawkins, Paulina A, Gladstone, Rebecca A, von Gottberg, Anne, Veeraraghavan, Balaji et al (show 29 more authors) , Ravikumar, KL, Kandasamy, Rama, Pollard, Sir Andrew J, Saha, Samir K, Bigogo, Godfrey, Antonio, Martin, Kwambana-Adams, Brenda, Mirza, Shaper, Shakoor, Sadia, Nisar, Imran, Cornick, Jennifer E, Lehmann, Deborah, Ford, Rebecca L, Sigauque, Betuel, Turner, Paul, Moisi, Jennifer, Obaro, Stephen K, Dagan, Ron, Diawara, Idrissa, Skoczynska, Anna, Wang, Hui, Carter, Philip E, Klugman, Keith P, Rodgers, Gail, Breiman, Robert F, McGee, Lesley, Bentley, Stephen D, Munoz-Almagro, Carmen and Varon, Emmanuelle (2022) Emergence of a multidrug-resistant and virulent <i>Streptococcus pneumoniae</i> lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study. LANCET MICROBE, 3 (10). E735-E743.

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Thindwa, Deus ORCID: 0000-0003-4845-7862, Wolter, Nicole, Pinsent, Amy, Carrim, Maimuna ORCID: 0000-0003-2717-5540, Ojal, John ORCID: 0000-0002-3010-1158, Tempia, Stefano ORCID: 0000-0003-4395-347X, Moyes, Jocelyn, McMorrow, Meredith ORCID: 0000-0001-6363-4033, Kleynhans, Jackie ORCID: 0000-0001-7081-6273, von Gottberg, Anne ORCID: 0000-0002-0243-7455 et al (show 3 more authors) , French, Neil ORCID: 0000-0003-4814-8293, Cohen, Cheryl and Flasche, Stefan ORCID: 0000-0002-5808-2606 (2021) Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016-2018: A hidden Markov modelling study. [Preprint]

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Thindwa, Deus, Wolter, Nicole, Pinsent, Amy, Carrim, Maimuna, Ojal, John, Tempia, Stefano, Moyes, Jocelyn, McMorrow, Meredith, Kleynhans, Jackie, von Gottberg, Anne et al (show 4 more authors) , French, Neil ORCID: 0000-0003-4814-8293, Cohen, Cheryl, Flasche, Stefan and Grp, PHIRST (2021) Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016-2018: A hidden Markov modelling study. PLOS COMPUTATIONAL BIOLOGY, 17 (12). e1009680-.

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Lo, Stephanie W ORCID: 0000-0002-2182-0222, Gladstone, Rebecca A ORCID: 0000-0002-7993-3051, van Tonder, Andries J ORCID: 0000-0002-4380-5250, Hawkins, Paulina A, Kwambana-Adams, Brenda, Cornick, Jennifer E ORCID: 0000-0001-6841-9842, Madhi, Shabir A ORCID: 0000-0002-7629-0636, Nzenze, Susan A, du Plessis, Mignon ORCID: 0000-0001-9186-0679, Kandasamy, Rama et al (show 13 more authors) , Carter, Philip E, Eser, Özgen Köseoglu, Ho, Pak Leung ORCID: 0000-0002-8811-1308, Elmdaghri, Naima, Shakoor, Sadia, Clarke, Stuart C ORCID: 0000-0002-7009-1548, Antonio, Martin, Everett, Dean B ORCID: 0000-0002-8458-6779, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F and Bentley, Stephen D (2018) Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine. Journal of clinical microbiology, 56 (7). e00228-e00218.

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Azarian, Taj, Mitchell, Patrick K, Georgieva, Maria, Thompson, Claudette M, Ghouila, Amel, Pollard, Andrew J, von Gottberg, Anne, du Plessis, Mignon, Antonio, Martin, Kwambana-Adams, Brenda A et al (show 17 more authors) , Clarke, Stuart C, Everett, Dean, Cornick, Jennifer, Sadowy, Ewa, Hryniewicz, Waleria, Skoczynska, Anna, Moisi, Jennifer C, McGee, Lesley, Beail, Bernard, Metcalf, Benjamin J, Breiman, Robert F, Ho, PL, Reid, Raymond, O'Brien, Katherine L, Gladstone, Rebecca A, Bentley, Stephen D and Hanage, William P (2018) Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. PLOS PATHOGENS, 14 (11). e1007438-.

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Bar-Zeev, Naor, Swarthout, Todd D, Everett, Dean B, Alaerts, Maaike, Msefula, Jacquline, Brown, Comfort, Bilima, Sithembile, Mallewa, Jane, King, Carina, von Gottberg, Anne et al (show 7 more authors) , Verani, Jennifer R, Whitney, Cynthia G, Mwansambo, Charles, Gordon, Stephen B, Cunliffe, Nigel A ORCID: 0000-0002-5449-4988, French, Neil ORCID: 0000-0003-4814-8293 and Heyderman, Robert S (2021) Impact and effectiveness of 13-valent pneumococcal conjugate vaccine on population incidence of vaccine and non-vaccine serotype invasive pneumococcal disease in Blantyre, Malawi, 2006-18: prospective observational time-series and case-control studies. LANCET GLOBAL HEALTH, 9 (7). E989-E998.

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Zhu, Yanshan, Almeida, Flavia Jacqueline, Baillie, J Kenneth, Bowen, Asha C, Britton, Philip N, Brizuela, Martin Eduardo, Buonsenso, Danilo, Burgner, David, Chew, Keng Yih, Chokephaibulkit, Kulkanya et al (show 39 more authors) , Cohen, Cheryl, Cormier, Stephania A, Crawford, Nigel, Curtis, Nigel, Farias, Camila GA, Gilks, Charles F, von Gottberg, Anne, Hamer, Diana, Jarovsky, Daniel, Jassat, Waasila, Jesus, Ana Rita, Kemp, Lisa S, Khumcha, Benjawan, McCallum, Georgina, Miller, Jessica E, Morello, Rosa, Munro, Alasdair PS, Openshaw, Peter JM, Padmanabhan, Srivatsan, Phongsamart, Wanatpreeya, Reubenson, Gary, Ritz, Nicole, Rodrigues, Fernanda, Rungmaitree, Supattra, Russell, Fiona, Safadi, Marco AP, Saner, Christoph, Semple, Malcolm G ORCID: 0000-0001-9700-0418, da Silva, Daniella Gregoria Bomfim Prado, de Sousa, Laise Marine Moura, Souza, Marilia Diogo Moco, Spann, Kirsten, Walaza, Sibongile, Wolter, Nicole, Xia, Yao, Yeoh, Daniel K, Zar, Heather J, Zimmermann, Petra and Short, Kirsty R (2023) International Pediatric COVID-19 Severity Over the Course of the Pandemic. JAMA PEDIATRICS, 177 (10). pp. 1073-1084.

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Gladstone, Rebecca A, Lo, Stephanie W, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Corander, Jukka, Page, Andrew J, Marttinen, Pekka, Bentley, Leon J, Ochoa, Theresa J et al (show 16 more authors) , Ho, Pak Leung, du Plessis, Mignon, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, McGee, Lesley, Breiman, Robert F and Bentley, Stephen D (2019) International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBIOMEDICINE, 43. pp. 338-346.

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Barr, David A ORCID: 0000-0002-2922-9381, Lewis, Joseph M ORCID: 0000-0002-3837-5188, Feasey, Nicholas, Schutz, Charlotte, Kerkhoff, Andrew D, Jacob, Shevin T, Andrews, Ben, Kelly, Paul, Lakhi, Shabir, Muchemwa, Levy et al (show 30 more authors) , Bacha, Helio A, Hadad, David J, Bedell, Richard, van Lettow, Monique, Zachariah, Rony, Crump, John A, Alland, David, Corbett, Elizabeth L, Gopinath, Krishnamoorthy, Singh, Sarman, Griesel, Rulan, Maartens, Gary, Mendelson, Marc, Ward, Amy, Parry, Christopher M ORCID: 0000-0001-7563-7282, Talbot, Elizabeth A, Munseri, Patricia, Dorman, Susan E, Martinson, Neil, Shah, Maunank, Cain, Kevin, Heilig, Charles M, Varma, Jay, von Gottberg, Anne, Sacks, Leonard, Wilson, Douglas, Squire, S Bertel, Lalloo, David G ORCID: 0000-0001-7680-2200, Davies, Geriant R ORCID: 0000-0002-3819-490X and Meintjes, Graeme (2020) Mycobacterium tuberculosis bloodstream infection prevalence, diagnosis, and mortality risk in seriously ill adults with HIV: a systematic review and meta-analysis of individual patient data. The Lancet Infectious Diseases, 20 (6). pp. 742-752.

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Thindwa, Deus, Clifford, Samuel, Kleynhans, Jackie, von Gottberg, Anne, Walaza, Sibongile, Meiring, Susan, Swarthout, Todd D, Miller, Elizabeth, McIntyre, Peter, Andrews, Nick et al (show 10 more authors) , Amin-Chowdhury, Zahin, Fry, Norman, Jambo, Kondwani C ORCID: 0000-0002-3195-2210, French, Neil ORCID: 0000-0003-4814-8293, Almeida, Samanta Cristine Grassi, Ladhani, Shamez N, Heyderman, Robert S, Cohen, Cheryl, de Cunto Brandileone, Maria Cristina and Flasche, Stefan (2023) Optimal age targeting for pneumococcal vaccination in older adults; a modelling study. NATURE COMMUNICATIONS, 14 (1). 888-.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Lees, John A, du Plessis, Mignon, Benisty, Rachel, Givon-Lavi, Noga, Hawkins, Paulina A, Cornick, Jennifer E, Kwambana-Adams, Brenda et al (show 80 more authors) , Law, Pierra Y, Ho, Pak Leung, Antonio, Martin, Everett, Dean B, Dagan, Ron, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D, Brooks, Abdullah W, Corso, Alejandra, Davydov, Alexander, Maguire, Alison, Pollard, Andrew, Kiran, Anmol ORCID: 0000-0003-2680-2303, Skoczynska, Anna, Moiane, Benild, Beall, Bernard, Sigauque, Betuel, Aanensen, David, Lehmann, Deborah, Faccone, Diego, Faster-Nyarko, Ebenezer, Bojang, Ebrima, Egorova, Ekaterina, Voropaeva, Elena, Sampane-Donkor, Eric, Sadowy, Ewa, Bigogo, Godfrey, Mucavele, Helio, Belabbes, Houria, Diawara, Idrissa, Moisi, Jennifer, Verani, Jennifer, Keenan, Jeremy, Nair, Jyothish N, Bhai, Thulasee, Ndlangisa, Kedibone M, Zerouali, Khalid, Ravikumar, KL, Titov, Leonid, De Gouveia, Linda, Alaerts, Maaike, Ip, Margaret, Brandileone, Maria Cristina de Cunto, Hasanuzzaman, Md, Paragi, Metka, Nurse-Lucas, Michele, Ali, Mushal, Elmdaghri, Naima, Croucher, Nicholas, Wolter, Nicole, Porat, Nttrit, Eser, Ozgen Kaseoglu, Akpaka, Patrick E, Turner, Paul, Gagetti, Paula, Tientcheu, Peggy-Estelle, Carter, Philip E, Mostowy, Rafal, Kandasamy, Rarna, Ford, Rebecca, Henderson, Rebecca, Malaker, Roly, Shakoor, Sadia, Almeida, Samanta Cristine Grassi, Saha, Samir K, Doiphode, Sanjay, Madhi, Shabir A, Sekaran, Shamala Devi, Srifuengfung, Somporn, Obaro, Stephen, Clarke, Stuart C, Nzenze, Susan A, Kastrin, Tamara, Ochoa, Theresa J, Balaji, Veeraraghavan, Hryniewicz, Waleria and Urban, Yulia (2019) Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study. LANCET INFECTIOUS DISEASES, 19 (7). pp. 759-769.

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Ndlangisa, Kedibone M, du Plessis, Mignon, Lo, Stephanie, de Gouveia, Linda, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Antonio, Martin, Kwambana-Adams, Brenda, Cornick, Jennifer, Everett, Dean B, Dagan, Ron et al (show 32 more authors) , Hawkins, Paulina A, Beall, Bernard, Corso, Alejandra, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Obaro, Stephen, Shakoor, Sadia, Donkor, Eric S, Gladstone, Rebecca A, Ho, Pak Leung, Paragi, Metka, Doiphode, Sanjay, Srifuengfung, Somporn, Ford, Rebecca, Moisi, Jennifer, Saha, Samir K, Bigogo, Godfrey, Sigauque, Betuel, Eser, Ozgen Koseoglu, Elmdaghri, Naima, Titov, Leonid, Turner, Paul, Kumar, KL Ravi, Kandasamy, Rama, Egorova, Ekaterina, Ip, Margaret, Breiman, Robert F, Klugman, Keith P, McGee, Lesley, Bentley, Stephen D, von Gottberg, Anne and Con, Global Pneumococcal Sequencing (2022) A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. MICROBIAL GENOMICS, 8 (4).

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cornick, Jennifer E, Harris, Simon R, Andam, Cheryl P, Bricio-Moreno, Laura, Yang, Marie, Yalcin, Feyruz, Ousmane, Sani, Govindpersad, Shanil, Senghore, Madikay et al (show 19 more authors) , Ebruke, Chinelo, Du Plessis, Mignon, Kiran, Anmol M ORCID: 0000-0003-2680-2303, Pluschke, Gerd, Sigauque, Betuel, McGee, Lesley, Klugman, Keith P, Turner, Paul, Corander, Jukka, Parkhill, Julian, Collard, Jean-Marc, Antonio, Martin, von Gottberg, Anne, Heyderman, Robert S, French, Neil ORCID: 0000-0003-4814-8293, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Hanage, William P, Everett, Dean B and Bentley, Stephen D (2016) Understanding pneumococcal serotype 1 biology through population genomic analysis. BMC INFECTIOUS DISEASES, 16 (1). 649-.

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Gladstone, Rebecca A, Lo, Stephanie W, Goater, Richard, Yeats, Corin, Taylor, Ben, Hadfield, James, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Bentley, Leon J et al (show 32 more authors) , Quah, Fu Xiang, Blaschke, Anne J, Pershing, Nicole L, Byington, Carrie L, Balaji, Veeraraghavan, Hryniewicz, Waleria, Sigauque, Betuel, Ravikumar, KL, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Ho, Pak Leung, du Plessis, Mignon, Ndlangisa, Kedibone M, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Pollard, Andrew J, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, Metcalf, Benjamin J, Li, Yuan, Beall, Bernard W, McGee, Lesley, Breiman, Robert F, Aanensen, David M and Bentley, Stephen D (2020) Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. MICROBIAL GENOMICS, 6 (5). e000357-.

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Hawkins, Paulina A, Chochua, Sopio, Lo, Stephanie W, Belman, Sophie, Antonio, Martin, Kwambana-Adams, Brenda, von Gottberg, Anne, du Plessis, Mignon, Cornick, Jen, Beall, Bernard et al (show 3 more authors) , Breiman, Robert F, Bentley, Stephen D and McGee, Lesley (2023) A global genomic perspective on the multidrug- resistant<i> Streptococcus</i><i> pneumoniae</i> 15A-CC63 sub- lineage following pneumococcal conjugate vaccine introduction. MICROBIAL GENOMICS, 9 (4).

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Du Plessis, Mignon, Cornick, Jennifer E, Hawkins, Paulina A, Madhi, Shabir A, Nzenze, Susan A, Kandasamy, Rama, Ravikumar, KL et al (show 18 more authors) , Elmdaghri, Naima, Kwambana-Adams, Brenda, Grassi Almeida, Samanta Cristine, Skoczynska, Anna, Egorova, Ekaterina, Titov, Leonid, Saha, Samir K, Paragi, Metka, Everett, Dean B, Antonio, Martin, Klugman, Keith P, Li, Yuan, Metcalf, Benjamin J, Beall, Bernard, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D and von Gottberg, Anne (2020) A mosaic tetracycline resistance gene <i>tet</i>(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 75 (3). pp. 512-520.