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Koolman, Leonard, Prakash, Reenesh, Diness, Yohane, Msefula, Chisomo, Nyirenda, Tonney S, Olgemoeller, Franziska, Wigley, Paul, Perez-Sepulveda, Blanca, Hinton, Jay CD ORCID: 0000-0003-2671-6026, Owen, Siân V et al (show 3 more authors) , Feasey, Nicholas A, Ashton, Philip M and Gordon, Melita A ORCID: 0000-0002-0629-0884 (2022) Case-control investigation of invasive Salmonella disease in Malawi reveals no evidence of environmental or animal transmission of invasive strains, and supports human to human transmission. PLoS neglected tropical diseases, 16 (12). e0010982-e0010982.

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Chibwana, Marah G ORCID: 0000-0002-8940-3855, Thole, Herbert W ORCID: 0000-0002-1507-1202, Anscombe, Cat, Ashton, Philip M, Green, Edward, Barnes, Kayla G, Cornick, Jen, Turner, Ann, Witte, Desiree ORCID: 0000-0002-2607-9816, Nthala, Sharon et al (show 17 more authors) , Thom, Chikondi, Kanyandula, Felistas, Ainani, Anna, Mtike, Natasha, Tambala, Hope, N'goma, Veronica, Mwafulirwa, Dorah, Asima, Erick, Morton, Ben ORCID: 0000-0002-6164-2854, Gmeiner, Markus ORCID: 0000-0002-1450-2955, Gundah, Zaziwe, Kawalazira, Gift, French, Neil ORCID: 0000-0003-4814-8293, Feasey, Nicholas, Heyderman, Robert S, Swarthout, Todd D ORCID: 0000-0001-5285-7039 and Jambo, Kondwani C ORCID: 0000-0002-3195-2210 (2023) Different clinical features in Malawian outpatients presenting with COVID-19 prior to and during Omicron variant dominance: A prospective observational study. PLOS global public health, 3 (3). e0001575-.

Ashton, Philip M, Cha, Jaeyoon, Anscombe, Catherine, Thuong, Nguyen TT, Thwaites, Guy E and Walker, Timothy M (2023) Distribution and origins of <i>Mycobacterium tuberculosis</i> L4 in Southeast Asia. Microbial genomics, 9 (2). mgen000955-.

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Tram, Trinh Thi Bich, Ha, Vu Thi Ngoc, Trieu, Le Pham Tien, Ashton, Philip M, Crawford, Emily D, Thu, Do Dang Anh, Quang, Nguyen Le, Thwaites, Guy E, Walker, Timothy M, Anscombe, Catherine et al (show 1 more authors) and Thuong, Nguyen Thuy Thuong (2023) FLASH-TB: an Application of Next-Generation CRISPR to Detect Drug Resistant Tuberculosis from Direct Sputum. JOURNAL OF CLINICAL MICROBIOLOGY, 61 (4). e0163422-.

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Carey, Megan E ORCID: 0000-0002-7797-9080, Dyson, Zoe A ORCID: 0000-0002-8887-3492, Ingle, Danielle J, Amir, Afreenish, Aworh, Mabel K, Chattaway, Marie Anne, Chew, Ka Lip, Crump, John A ORCID: 0000-0002-4529-102X, Feasey, Nicholas A, Howden, Benjamin P ORCID: 0000-0003-0237-1473 et al (show 105 more authors) , Keddy, Karen H, Maes, Mailis, Parry, Christopher M ORCID: 0000-0001-7563-7282, Van Puyvelde, Sandra ORCID: 0000-0001-8434-5732, Webb, Hattie E ORCID: 0000-0002-1190-7930, Afolayan, Ayorinde Oluwatobiloba ORCID: 0000-0003-1405-2365, Alexander, Anna P, Anandan, Shalini, Andrews, Jason R ORCID: 0000-0002-5967-251X, Ashton, Philip M, Basnyat, Buddha, Bavdekar, Ashish, Bogoch, Isaac I, Clemens, John D, da Silva, Kesia Esther, De, Anuradha ORCID: 0000-0002-8701-4100, de Ligt, Joep, Diaz Guevara, Paula Lucia ORCID: 0000-0002-8252-5622, Dolecek, Christiane, Dutta, Shanta, Ehlers, Marthie M, Francois Watkins, Louise ORCID: 0000-0002-1165-1162, Garrett, Denise O, Godbole, Gauri, Gordon, Melita A ORCID: 0000-0002-0629-0884, Greenhill, Andrew R, Griffin, Chelsey, Gupta, Madhu, Hendriksen, Rene S, Heyderman, Robert S, Hooda, Yogesh, Hormazabal, Juan Carlos, Ikhimiukor, Odion O ORCID: 0000-0002-3738-4584, Iqbal, Junaid ORCID: 0000-0002-5014-2176, Jacob, Jobin John, Jenkins, Claire, Jinka, Dasaratha Ramaiah ORCID: 0000-0002-8184-279X, John, Jacob ORCID: 0000-0003-3654-5099, Kang, Gagandeep ORCID: 0000-0002-3656-564X, Kanteh, Abdoulie, Kapil, Arti, Karkey, Abhilasha, Kariuki, Samuel ORCID: 0000-0003-3209-9503, Kingsley, Robert A, Koshy, Roshine Mary, Lauer, AC, Levine, Myron M, Lingegowda, Ravikumar Kadahalli, Luby, Stephen P, Mackenzie, Grant Austin, Mashe, Tapfumanei, Msefula, Chisomo ORCID: 0000-0003-2304-886X, Mutreja, Ankur, Nagaraj, Geetha, Nagaraj, Savitha, Nair, Satheesh ORCID: 0000-0002-7297-1485, Naseri, Take K, Nimarota-Brown, Susana, Njamkepo, Elisabeth, Okeke, Iruka N ORCID: 0000-0002-1694-7587, Perumal, Sulochana Putli Bai, Pollard, Andrew J, Pragasam, Agila Kumari, Qadri, Firdausi, Qamar, Farah N, Rahman, Sadia Isfat Ara, Rambocus, Savitra Devi, Rasko, David A, Ray, Pallab, Robins-Browne, Roy, Rongsen-Chandola, Temsunaro, Rutanga, Jean Pierre ORCID: 0000-0002-5273-6170, Saha, Samir K ORCID: 0000-0003-3820-0748, Saha, Senjuti ORCID: 0000-0001-6087-6766, Saigal, Karnika, Sajib, Mohammad Saiful Islam, Seidman, Jessica C, Shakya, Jivan, Shamanna, Varun, Shastri, Jayanthi, Shrestha, Rajeev, Sia, Sonia, Sikorski, Michael J, Singh, Ashita, Smith, Anthony M, Tagg, Kaitlin A, Tamrakar, Dipesh, Tanmoy, Arif Mohammed, Thomas, Maria, Thomas, Mathew S, Thomsen, Robert, Thomson, Nicholas R, Tupua, Siaosi, Vaidya, Krista, Valcanis, Mary, Veeraraghavan, Balaji, Weill, François-Xavier, Wright, Jackie, Dougan, Gordon, Argimón, Silvia, Keane, Jacqueline A, Aanensen, David M ORCID: 0000-0001-6688-0854, Baker, Stephen, Holt, Kathryn E ORCID: 0000-0003-3949-2471 and Global Typhoid Genomics Consortium Group Authorship, (2023) Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 <i>Salmonella</i> Typhi genomes. eLife, 12. e85867-.

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Neuert, Saskia, Nair, Satheesh, Day, Martin R, Doumith, Michel, Ashton, Philip M, Mellor, Kate C, Jenkins, Claire, Hopkins, Katie L, Woodford, Neil, de Pinna, Elizabeth et al (show 2 more authors) , Godbole, Gauri and Dallman, Timothy J (2018) Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal <i>Salmonella enterica</i>. FRONTIERS IN MICROBIOLOGY, 9 (MAR). 592-.

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Ashton, Philip M, Owen, Sian V ORCID: 0000-0001-5330-3177, Kaindama, Lukeki, Rowe, Will PM ORCID: 0000-0003-0384-4463, Lane, Chris R, Larkin, Lesley, Nair, Satheesh, Jenkins, Claire, de Pinna, Elizabeth M, Feasey, Nicholas A et al (show 2 more authors) , Hinton, Jay CD ORCID: 0000-0003-2671-6026 and Dallman, Timothy J (2017) Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa. GENOME MEDICINE, 9 (1). 92-.

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Srinivasan, Vijay, Ha, Vu TN, Vinh, Dao N, Thai, Phan VK, Ha, Dang TM, Lan, Nguyen H, Hai, Hoang T, Walker, Timothy M, Thu, Do DA, Dunstan, Sarah J et al (show 4 more authors) , Thwaites, Guy E, Ashton, Philip M, Caws, Maxine and Thuong, Nguyen TT (2020) Sources of Multidrug Resistance in Patients With Previous Isoniazid-Resistant Tuberculosis Identified Using Whole Genome Sequencing: A Longitudinal Cohort Study. CLINICAL INFECTIOUS DISEASES, 71 (10). E532-E539.

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Barnes, Kayla G ORCID: 0000-0002-8291-4388, Levy, Joshua I ORCID: 0000-0001-7573-7793, Gauld, Jillian, Rigby, Jonathan ORCID: 0000-0001-5143-0981, Kanjerwa, Oscar, Uzzell, Christopher B ORCID: 0000-0002-4204-3485, Chilupsya, Chisomo, Anscombe, Catherine, Tomkins-Tinch, Christopher ORCID: 0000-0002-9114-6421, Mbeti, Omar et al (show 16 more authors) , Cairns, Edward, Thole, Herbert, McSweeney, Shannon, Chibwana, Marah G ORCID: 0000-0002-8940-3855, Ashton, Philip M, Jere, Khuzwayo C ORCID: 0000-0003-3376-8529, Meschke, John Scott, Diggle, Peter, Cornick, Jennifer, Chilima, Benjamin, Jambo, Kondwani, Andersen, Kristian G ORCID: 0000-0001-6431-5982, Kawalazira, Gift, Paterson, Steve ORCID: 0000-0002-1307-2981, Nyirenda, Tonney S and Feasey, Nicholas ORCID: 0000-0003-4041-1405 (2023) Utilizing river and wastewater as a SARS-CoV-2 surveillance tool in settings with limited formal sewage systems. Nature communications, 14 (1). 7883-.

Chirwa, Esmeda B, Dale, Helen, Gordon, Melita A ORCID: 0000-0002-0629-0884 and Ashton, Philip M (2023) What is the Source of Infections Causing Invasive Nontyphoidal <i>Salmonella</i> Disease? Open forum infectious diseases, 10 (3). ofad086-ofad086.

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Anscombe, Catherine, Lissauer, Samantha, Thole, Herbert, Rylance, Jamie, Dula, Dingase, Menyere, Mavis, Kutambe, Belson, van der Veer, Charlotte, Phiri, Tamara, Banda, Ndaziona et al (show 14 more authors) , Mndolo, Kwazizira, Mponda, Kelvin, Phiri, Chimota, Mallewa, Jane, Nyirenda, Mulinda, Katha, Grace, Mwandumba, Henry, Gordon, Stephen B, Jambo, Kondwani C ORCID: 0000-0002-3195-2210, Cornick, Jennifer, Feasey, Nicholas, Barnes, Kayla G, Morton, Ben and Ashton, Philip M (2023) A comparison of four epidemic waves of COVID-19 in Malawi; an observational cohort study. BMC INFECTIOUS DISEASES, 23 (1). 79-.

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Kumwenda, Benjamin, Canals, Rocío, Predeus, Alexander V ORCID: 0000-0002-2750-1599, Zhu, Xiaojun, Kröger, Carsten, Pulford, Caisey, Wenner, Nicolas, Lora, Lizeth Lacharme, Li, Yan ORCID: 0000-0002-7480-9545, Owen, Siân V et al (show 7 more authors) , Everett, Dean ORCID: 0000-0003-2253-6036, Hokamp, Karsten, Heyderman, Robert S, Ashton, Philip M, Gordon, Melita A ORCID: 0000-0002-0629-0884, Msefula, Chisomo L and Hinton, Jay CD ORCID: 0000-0003-2671-6026 (2024) <i>Salmonella enterica</i> serovar Typhimurium ST313 sublineage 2.2 has emerged in Malawi with a characteristic gene expression signature and a fitness advantage. microLife. uqae005-.