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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Yang, Marie, Cornick, Jennifer E, du Plessis, Mignon, Gladstone, Rebecca A, Kwambana-Adams, Brenda A, Lo, Stephanie W, Ebruke, Chinelo, Tonkin-Hill, Gerry, Peno, Chikondi et al (show 16 more authors) , Senghore, Madikay, Obaro, Stephen K, Ousmane, Sani, Pluschke, Gerd, Collard, Jean-Marc, Sigauque, Betuel, French, Neil ORCID: 0000-0003-4814-8293, Klugman, Keith P, Heyderman, Robert S, McGee, Lesley, Antonio, Martin, Breiman, Robert F, von Gottberg, Anne, Everett, Dean B, Kadioglu, Aras ORCID: 0000-0003-1137-6321 and Bentley, Stephen D (2020) Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. COMMUNICATIONS BIOLOGY, 3 (1). 559-.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Senghore, Madikay, Bojang, Ebrima, Lo, Stephanie W, Ebruke, Chinelo, Gladstone, Rebecca A, Tientcheu, Peggy-Estelle, Bancroft, Rowan E, Worwui, Archibald, Foster-Nyarko, Ebenezer et al (show 10 more authors) , Ceesay, Fatima, Okoi, Catherine, McGee, Lesley, Klugman, Keith P, Breiman, Robert F, Barer, Michael R, Adegbola, Richard A, Antonio, Martin, Bentley, Stephen D and Kwambana-Adams, Brenda A (2021) Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life. FRONTIERS IN PEDIATRICS, 8. 587730-.

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Kasumba, Irene N, Pulford, Caisey V, Perez-Sepulveda, Blanca M, Sen, Sunil, Sayed, Nurulla, Permala-Booth, Jasnehta, Livio, Sofie, Heavens, Darren, Low, Ross, Hall, Neil et al (show 35 more authors) , Roose, Anna, Powell, Helen, Farag, Tamer, Panchalingham, Sandra, Berkeley, Lynette, Nasrin, Dilruba, Blackwelder, William C, Wu, Yukun, Tamboura, Boubou, Sanogo, Doh, Onwuchekwa, Uma, Sow, Samba O, Ochieng, John B, Omore, Richard, Oundo, Joseph O, Breiman, Robert F, Mintz, Eric D, O'Reilly, Ciara E, Antonio, Martin, Saha, Debasish, Hossain, M Jahangir, Mandomando, Inacio, Bassat, Quique, Alonso, Pedro L, Ramamurthy, T, Sur, Dipika, Qureshi, Shahida, Zaidi, Anita KM, Hossain, Anowar, Faruque, Abu SG, Nataro, James P, Kotloff, Karen L, Levine, Myron M, Hinton, Jay CD ORCID: 0000-0003-2671-6026 and Tennant, Sharon M (2021) Characteristics of <i>Salmonella</i> Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study. CLINICAL INFECTIOUS DISEASES, 73 (4). pp. 631-641.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Ebruke, Chinelo, Senghore, Madikay, Lo, Stephanie W, Tientcheu, Peggy-Estelle, Gladstone, Rebecca A, Tonkin-Hill, Gerry, Cornick, Jennifer E, Yang, Marie, Worwui, Archibald et al (show 11 more authors) , McGee, Lesley, Breiman, Robert F, Klugman, Keith P, Kadioglu, Aras ORCID: 0000-0003-1137-6321, Everett, Dean B, Mackenzie, Grant, Croucher, Nicholas J, Roca, Anna, Kwambana-Adams, Brenda A, Antonio, Martin and Bentley, Stephen D (2022) Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci. GENOME BIOLOGY AND EVOLUTION, 14 (4). evac052-.

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Lo, Stephanie W, Mellor, Kate, Cohen, Robert, Alonso, Alba Redin, Belman, Sophie, Kumar, Narender, Hawkins, Paulina A, Gladstone, Rebecca A, von Gottberg, Anne, Veeraraghavan, Balaji et al (show 29 more authors) , Ravikumar, KL, Kandasamy, Rama, Pollard, Sir Andrew J, Saha, Samir K, Bigogo, Godfrey, Antonio, Martin, Kwambana-Adams, Brenda, Mirza, Shaper, Shakoor, Sadia, Nisar, Imran, Cornick, Jennifer E, Lehmann, Deborah, Ford, Rebecca L, Sigauque, Betuel, Turner, Paul, Moisi, Jennifer, Obaro, Stephen K, Dagan, Ron, Diawara, Idrissa, Skoczynska, Anna, Wang, Hui, Carter, Philip E, Klugman, Keith P, Rodgers, Gail, Breiman, Robert F, McGee, Lesley, Bentley, Stephen D, Munoz-Almagro, Carmen and Varon, Emmanuelle (2022) Emergence of a multidrug-resistant and virulent <i>Streptococcus pneumoniae</i> lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study. LANCET MICROBE, 3 (10). E735-E743.

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Lo, Stephanie W ORCID: 0000-0002-2182-0222, Gladstone, Rebecca A ORCID: 0000-0002-7993-3051, van Tonder, Andries J ORCID: 0000-0002-4380-5250, Hawkins, Paulina A, Kwambana-Adams, Brenda, Cornick, Jennifer E ORCID: 0000-0001-6841-9842, Madhi, Shabir A ORCID: 0000-0002-7629-0636, Nzenze, Susan A ORCID: 0000-0003-3906-133X, du Plessis, Mignon ORCID: 0000-0001-9186-0679, Kandasamy, Rama ORCID: 0000-0002-3111-5586 et al (show 13 more authors) , Carter, Philip E, Eser, Özgen Köseoglu, Ho, Pak Leung ORCID: 0000-0002-8811-1308, Elmdaghri, Naima, Shakoor, Sadia, Clarke, Stuart C ORCID: 0000-0002-7009-1548, Antonio, Martin, Everett, Dean B ORCID: 0000-0002-8458-6779, von Gottberg, Anne ORCID: 0000-0002-0243-7455, Klugman, Keith P, McGee, Lesley, Breiman, Robert F ORCID: 0000-0002-7099-2936 and Bentley, Stephen D (2018) Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine. Journal of clinical microbiology, 56 (7). e00228-e00218.

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Azarian, Taj, Mitchell, Patrick K, Georgieva, Maria, Thompson, Claudette M, Ghouila, Amel, Pollard, Andrew J, von Gottberg, Anne, du Plessis, Mignon, Antonio, Martin, Kwambana-Adams, Brenda A et al (show 17 more authors) , Clarke, Stuart C, Everett, Dean, Cornick, Jennifer, Sadowy, Ewa, Hryniewicz, Waleria, Skoczynska, Anna, Moisi, Jennifer C, McGee, Lesley, Beail, Bernard, Metcalf, Benjamin J, Breiman, Robert F, Ho, PL, Reid, Raymond, O'Brien, Katherine L, Gladstone, Rebecca A, Bentley, Stephen D and Hanage, William P (2018) Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. PLOS PATHOGENS, 14 (11). e1007438-.

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Gladstone, Rebecca A, Lo, Stephanie W, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Corander, Jukka, Page, Andrew J, Marttinen, Pekka, Bentley, Leon J, Ochoa, Theresa J et al (show 16 more authors) , Ho, Pak Leung, du Plessis, Mignon, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, McGee, Lesley, Breiman, Robert F and Bentley, Stephen D (2019) International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBIOMEDICINE, 43. pp. 338-346.

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Wong, Vanessa K, Holt, Kathryn E, Okoro, Chinyere, Baker, Stephen, Pickard, Derek J, Marks, Florian, Page, Andrew J, Olanipekun, Grace, Munir, Huda, Alter, Roxanne et al (show 21 more authors) , Fey, Paul D, Feasey, Nicholas A, Weill, Francois-Xavier, Le Hello, Simon, Hart, Peter J, Kariuki, Samuel, Breiman, Robert F, Gordon, Melita A ORCID: 0000-0002-0629-0884, Heyderman, Robert S, Jacobs, Jan, Lunguya, Octavie, Msefula, Chisomo, MacLennan, Calman A, Keddy, Karen H, Smith, Anthony M, Onsare, Robert S, De Pinna, Elizabeth, Nair, Satheesh, Amos, Ben, Dougan, Gordon and Obaro, Stephen (2016) Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa. PLOS NEGLECTED TROPICAL DISEASES, 10 (9). e0004781-.

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Wong, Vanessa K, Baker, Stephen, Pickard, Derek J, Parkhill, Julian, Page, Andrew J, Feasey, Nicholas A, Kingsley, Robert A, Thomson, Nicholas R, Keane, Jacqueline A, Weill, François-Xavier et al (show 64 more authors) , Edwards, David J, Hawkey, Jane, Harris, Simon R, Mather, Alison E, Cain, Amy K, Hadfield, James, Hart, Peter J, Thieu, Nga Tran Vu, Klemm, Elizabeth J, Glinos, Dafni A, Breiman, Robert F, Watson, Conall H, Kariuki, Samuel, Gordon, Melita ORCID: 0000-0002-0629-0884, Heyderman, Robert S, Okoro, Chinyere, Jacobs, Jan, Lunguya, Octavie, Edmunds, W John, Msefula, Chisomo, Chabalgoity, Jose A, Kama, Mike, Jenkins, Kylie, Dutta, Shanta, Marks, Florian, Campos, Josefina, Thompson, Corinne, Obaro, Stephen, MacLennan, Calman A, Dolecek, Christiane, Keddy, Karen H, Smith, Anthony M, Parry, Christopher M ORCID: 0000-0001-7563-7282, Karkey, Abhilasha, Mulholland, E Kim, Campbell, James I, Dongol, Sabina, Basnyat, Buddha, Dufour, Muriel, Bandaranayake, Don, Naseri, Take Toleafoa, Singh, Shalini Pravin, Hatta, Mochammad, Newton, Paul, Onsare, Robert S, Isaia, Lupeoletalalei, Dance, David, Davong, Viengmon, Thwaites, Guy, Wijedoru, Lalith, Crump, John A, De Pinna, Elizabeth, Nair, Satheesh, Nilles, Eric J, Thanh, Duy Pham, Turner, Paul, Soeng, Sona, Valcanis, Mary, Powling, Joan, Dimovski, Karolina, Hogg, Geoff, Farrar, Jeremy, Holt, Kathryn E and Dougan, Gordon (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature Genetics, 47 (06). pp. 632-639.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Lees, John A, du Plessis, Mignon, Benisty, Rachel, Givon-Lavi, Noga, Hawkins, Paulina A, Cornick, Jennifer E, Kwambana-Adams, Brenda et al (show 80 more authors) , Law, Pierra Y, Ho, Pak Leung, Antonio, Martin, Everett, Dean B, Dagan, Ron, von Gottberg, Anne, Klugman, Keith P, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D, Brooks, Abdullah W, Corso, Alejandra, Davydov, Alexander, Maguire, Alison, Pollard, Andrew, Kiran, Anmol ORCID: 0000-0003-2680-2303, Skoczynska, Anna, Moiane, Benild, Beall, Bernard, Sigauque, Betuel, Aanensen, David, Lehmann, Deborah, Faccone, Diego, Faster-Nyarko, Ebenezer, Bojang, Ebrima, Egorova, Ekaterina, Voropaeva, Elena, Sampane-Donkor, Eric, Sadowy, Ewa, Bigogo, Godfrey, Mucavele, Helio, Belabbes, Houria, Diawara, Idrissa, Moisi, Jennifer, Verani, Jennifer, Keenan, Jeremy, Nair, Jyothish N, Bhai, Thulasee, Ndlangisa, Kedibone M, Zerouali, Khalid, Ravikumar, KL, Titov, Leonid, De Gouveia, Linda, Alaerts, Maaike, Ip, Margaret, Brandileone, Maria Cristina de Cunto, Hasanuzzaman, Md, Paragi, Metka, Nurse-Lucas, Michele, Ali, Mushal, Elmdaghri, Naima, Croucher, Nicholas, Wolter, Nicole, Porat, Nttrit, Eser, Ozgen Kaseoglu, Akpaka, Patrick E, Turner, Paul, Gagetti, Paula, Tientcheu, Peggy-Estelle, Carter, Philip E, Mostowy, Rafal, Kandasamy, Rarna, Ford, Rebecca, Henderson, Rebecca, Malaker, Roly, Shakoor, Sadia, Almeida, Samanta Cristine Grassi, Saha, Samir K, Doiphode, Sanjay, Madhi, Shabir A, Sekaran, Shamala Devi, Srifuengfung, Somporn, Obaro, Stephen, Clarke, Stuart C, Nzenze, Susan A, Kastrin, Tamara, Ochoa, Theresa J, Balaji, Veeraraghavan, Hryniewicz, Waleria and Urban, Yulia (2019) Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study. LANCET INFECTIOUS DISEASES, 19 (7). pp. 759-769.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Cornick, Jennifer E, Andam, Cheryl P, Gladstone, Rebecca A, Alaerts, Maaike, Musicha, Patrick, Peno, Chikondi, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng'ona, Arox W ORCID: 0000-0002-0841-7586, Kiran, Anmol M ORCID: 0000-0003-2680-2303 et al (show 9 more authors) , Msefula, Chisomo L, McGee, Lesley, Breiman, Robert F, Kadioglu, Aras ORCID: 0000-0003-1137-6321, French, Neil ORCID: 0000-0003-4814-8293, Heyderman, Robert S, Hanage, William P, Bentley, Stephen D and Everett, Dean B (2017) Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi. VACCINE, 35 (35). pp. 4594-4602.

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van Tonder, Andries J, Gladstone, Rebecca A, Lo, Stephanie W, Nahm, Moon H, du Plessis, Mignon, Cornick, Jennifer, Kwambana-Adams, Brenda, Madhi, Shabir A, Hawkins, Paulina A, Benisty, Rachel et al (show 8 more authors) , Dagan, Ron, Everett, Dean, Antonio, Martin, Klugman, Keith P, von Gottbere, Anne, Breiman, Robert F, McGee, Lesley and Bentley, Stephen D (2019) Putative novel <i>cps</i> loci in a large global collection of pneumococci. MICROBIAL GENOMICS, 5 (7). e000274-.

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Park, Se Eun, Toy, Trevor, Espinoza, Ligia Maria Cruz, Panzner, Ursula, Mogeni, Ondari D, Im, Justin, Poudyal, Nimesh, Pak, Gi Deok, Seo, Hyeongwon, Chon, Yun et al (show 34 more authors) , Schutt-Gerowitt, Heidi, Mogasale, Vittal, Ramani, Enusa, Dey, Ayan, Park, Ju Yeong, Kim, Jong-Hoon, Seo, Hye Jin, Jeon, Hyon Jin, Haselbeck, Andrea, Conway Roy, Keriann, MacWright, William, Adu-Sarkodie, Yaw, Owusu-Dabo, Ellis, Osei, Isaac, Owusu, Michael, Rakotozandrindrainy, Raphael, Soura, Abdramane Bassiahi, Kabore, Leon Parfait, Teferi, Mekonnen, Okeke, Iruka N, Kehinde, Aderemi, Popoola, Oluwafemi, Jacobs, Jan, Metila, Octavie Lunguya, Meyer, Christian G, Crump, John A, Elias, Sean, Maclennan, Calman A, Parry, Christopher M ORCID: 0000-0001-7563-7282, Baker, Stephen, Mintz, Eric D, Breiman, Robert F, Clemens, John D and Marks, Florian (2019) The Severe Typhoid Fever in Africa Program: Study Design and Methodology to Assess Disease Severity, Host Immunity, and Carriage Associated With Invasive Salmonellosis. CLINICAL INFECTIOUS DISEASES, 69 (Suppl ). S422-S434.

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Ndlangisa, Kedibone M, du Plessis, Mignon, Lo, Stephanie, de Gouveia, Linda, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Antonio, Martin, Kwambana-Adams, Brenda, Cornick, Jennifer, Everett, Dean B, Dagan, Ron et al (show 32 more authors) , Hawkins, Paulina A, Beall, Bernard, Corso, Alejandra, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Obaro, Stephen, Shakoor, Sadia, Donkor, Eric S, Gladstone, Rebecca A, Ho, Pak Leung, Paragi, Metka, Doiphode, Sanjay, Srifuengfung, Somporn, Ford, Rebecca, Moisi, Jennifer, Saha, Samir K, Bigogo, Godfrey, Sigauque, Betuel, Eser, Ozgen Koseoglu, Elmdaghri, Naima, Titov, Leonid, Turner, Paul, Kumar, KL Ravi, Kandasamy, Rama, Egorova, Ekaterina, Ip, Margaret, Breiman, Robert F, Klugman, Keith P, McGee, Lesley, Bentley, Stephen D, von Gottberg, Anne and Con, Global Pneumococcal Sequencing (2022) A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. MICROBIAL GENOMICS, 8 (4). 000746-.

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Gladstone, Rebecca A, Lo, Stephanie W, Goater, Richard, Yeats, Corin, Taylor, Ben, Hadfield, James, Lees, John A, Croucher, Nicholas J, van Tonder, Andries J, Bentley, Leon J et al (show 32 more authors) , Quah, Fu Xiang, Blaschke, Anne J, Pershing, Nicole L, Byington, Carrie L, Balaji, Veeraraghavan, Hryniewicz, Waleria, Sigauque, Betuel, Ravikumar, KL, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Ho, Pak Leung, du Plessis, Mignon, Ndlangisa, Kedibone M, Cornick, Jennifer E, Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A, Madhi, Shabir A, Hawkins, Paulina A, Pollard, Andrew J, Everett, Dean B, Antonio, Martin, Dagan, Ron, Klugman, Keith P, von Gottberg, Anne, Metcalf, Benjamin J, Li, Yuan, Beall, Bernard W, McGee, Lesley, Breiman, Robert F, Aanensen, David M and Bentley, Stephen D (2020) Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. MICROBIAL GENOMICS, 6 (5). pp. 1-13.

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Senghore, Madikay, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Bojang, Ebrima, Tientcheu, Peggy-Estelle, Bancroft, Rowan E, Lo, Stephanie W, Gladstone, Rebecca A, McGee, Lesley, Worwui, Archibald, Foster-Nyarko, Ebenezer et al (show 9 more authors) , Ceesay, Fatima, Okoi, Catherine Bi, Klugman, Keith P, Breiman, Robert F, Bentley, Stephen D, Adegbola, Richard, Antonio, Martin, Hanage, William P and Kwambana-Adams, Brenda A (2022) Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints. MICROBIAL GENOMICS, 8 (2). 000732-.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Senghore, Madikay, Bojang, Ebrima, Gladstone, Rebecca A, Lo, Stephanie W, Tientcheu, Peggy-Estelle, Bancroft, Rowan E, Worwui, Archibald, Foster-Nyarko, Ebenezer, Ceesay, Fatima et al (show 9 more authors) , Okoi, Catherine, McGee, Lesley, Klugman, Keith P, Breiman, Robert F, Barer, Michael R, Adegbola, Richard A, Antonio, Martin, Bentley, Stephen D and Kwambana-Adams, Brenda A (2020) Within-host microevolution of <i>Streptococcus pneumoniae</i> is rapid and adaptive during natural colonisation. NATURE COMMUNICATIONS, 11 (1). 3442-.

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Hawkins, Paulina A, Chochua, Sopio, Lo, Stephanie W, Belman, Sophie, Antonio, Martin, Kwambana-Adams, Brenda, von Gottberg, Anne, du Plessis, Mignon, Cornick, Jen, Beall, Bernard et al (show 3 more authors) , Breiman, Robert F, Bentley, Stephen D and McGee, Lesley (2023) A global genomic perspective on the multidrug- resistant<i> Streptococcus</i><i> pneumoniae</i> 15A-CC63 sub- lineage following pneumococcal conjugate vaccine introduction. MICROBIAL GENOMICS, 9 (4). mgen000998-.

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Lo, Stephanie W, Gladstone, Rebecca A, van Tonder, Andries J, Du Plessis, Mignon, Cornick, Jennifer E, Hawkins, Paulina A, Madhi, Shabir A, Nzenze, Susan A, Kandasamy, Rama, Ravikumar, KL et al (show 18 more authors) , Elmdaghri, Naima, Kwambana-Adams, Brenda, Grassi Almeida, Samanta Cristine, Skoczynska, Anna, Egorova, Ekaterina, Titov, Leonid, Saha, Samir K, Paragi, Metka, Everett, Dean B, Antonio, Martin, Klugman, Keith P, Li, Yuan, Metcalf, Benjamin J, Beall, Bernard, McGee, Lesley, Breiman, Robert F, Bentley, Stephen D and von Gottberg, Anne (2020) A mosaic tetracycline resistance gene <i>tet</i>(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 75 (3). pp. 512-520.