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Singleton, David ORCID: 0000-0002-1980-5410, Ibarz-Pavon, Ana, Swarthout, Todd D, Bonomali, Farouck, Cornick, Jennifer, Kalizang'oma, Akuzike, Ntiza, Noah, Brown, Comfort, Chipatala, Raphael, Nyangulu, Wongani et al (show 7 more authors) , Chirombo, James, Kawalazira, Gift, Chibowa, Henry, Mwansambo, Charles, Maleta, Kenneth Mphatso, French, Neil ORCID: 0000-0003-4814-8293 and Heyderman, Robert S (2023) Cross-sectional health centre and community-based evaluation of the impact of pneumococcal and malaria vaccination on antibiotic prescription and usage, febrile illness and antimicrobial resistance in young children in Malawi: the IVAR study protocol. BMJ Open, 13 (5). e069560-e069560.

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Morton, Ben ORCID: 0000-0002-6164-2854, Barnes, Kayla G, Anscombe, Catherine, Jere, Khuzwayo ORCID: 0000-0003-3376-8529, Matambo, Prisca, Mandolo, Jonathan, Kamng'ona, Raphael, Brown, Comfort, Nyirenda, James, Phiri, Tamara et al (show 15 more authors) , Banda, Ndaziona P, Van der Veer, Charlotte ORCID: 0000-0002-1685-1622, Mndolo, Kwazizira S, Mponda, Kelvin, Rylance, Jamie, Phiri, Chimota, Mallewa, Jane, Nyirenda, Mulinda, Katha, Grace, Kambiya, Paul, Jafali, James, Mwandumba, Henry C, Gordon, Stephen B, Cornick, Jennifer and Jambo, Kondwani C ORCID: 0000-0002-3195-2210 (2021) Distinct clinical and immunological profiles of patients with evidence of SARS-CoV-2 infection in sub-Saharan Africa. NATURE COMMUNICATIONS, 12 (1). 3554-.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Heinsbroek, Ellen, Gladstone, Rebecca, Tafatatha, Terence, Alaerts, Maaike, Peno, Chikondi, Cornick, Jennifer, Musicha, Patrick, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng’ona, Arox et al (show 8 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Mcgee, Lesley, Hanage, William, Breiman, Robert, Heyderman, Robert, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean and Bentley, Stephen (2020) Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data. Clinical Infectious Diseases, 70 (7). pp. 1294-1303.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Heinsbroek, Ellen, Gladstone, Rebecca, Tafatatha, Terence, Alaerts, Maaike, Peno, Chikondi, Cornick, Jennifer, Musicha, Patrick, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng’ona, Arox et al (show 8 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Mcgee, Lesley, Hanage, William, Breiman, Robert, Heyderman, Robert, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean and Bentley, Stephen (2020) Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data. Clinical Infectious Diseases, 70 (7). 1294 - 1303.

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Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Heinsbroek, Ellen, Gladstone, Rebecca, Tafatatha, Terence, Alaerts, Maaike, Peno, Chikondi, Cornick, Jennifer, Musicha, Patrick, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Kamng’ona, Arox et al (show 8 more authors) , Kadioglu, Aras ORCID: 0000-0003-1137-6321, Mcgee, Lesley, Hanage, William, Breiman, Robert, Heyderman, Robert, French, Neil ORCID: 0000-0003-4814-8293, Everett, Dean and Bentley, Stephen (2018) Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data. BioRxiv.

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Ahmed, Tahmeed, Chisti, Mohammod Jobayer, Rahman, Muhammad Waliur, Alam, Tahmina, Ahmed, Dilruba, Parvin, Irin, Kabir, Md Farhad, Sazawal, Sunil, Dhingra, Pratibha, Dutta, Arup et al (show 54 more authors) , Deb, Saikat, Chouhan, Aishwarya, Sharma, Anil Kumar, Jaiswal, Vijay Kumar, Dhingra, Usha, Walson, Judd L, Singa, Benson O, Pavlinac, Patricia B, McGrath, Christine J, Nyabinda, Churchil, Deichsel, Emily L, Anyango, Maurine, Kariuki, Kevin Mwangi, Rwigi, Doreen, Tornberg-Belanger, Stephanie N, Kotloff, Karen L, Sow, Samba O, Tapia, Milagritos D, Haidara, FadimaCheick, Mehta, Ashka, Coulibaly, Flanon, Badji, Henry, Permala-Booth, Jasnehta, Tennant, Sharon M, Malle, Dramane, Bar-Zeev, Naor, Dube, Queen, Freyne, Bridget ORCID: 0000-0002-9542-1582, Cunliffe, Nigel ORCID: 0000-0002-5449-4988, Ndeketa, Latif ORCID: 0000-0002-3376-597X, Witte, Desiree, Ndamala, Chifundo, Cornick, Jennifer, Qamar, Farah Naz, Yousafzai, Mohammad Tahir, Qureshi, Shahida, Shakoor, Sadia, Thobani, Rozina, Hotwani, Aneeta, Kabir, Furqan, Mohammed, Jan, Manji, Karim, Duggan, Christopher P, Kisenge, Rodrick, Sudfeld, Christopher R, Kibwana, Upendo, Somji, Sarah, Bakari, Mohamed, Msemwa, Cecylia, Samma, Abraham, Bahl, Rajiv, De Costa, Ayesha, Simon, Jonathon and Ashorn, Per (2021) Effect of 3 Days of Oral Azithromycin on Young Children With Acute Diarrhea in Low-Resource Settings A Randomized Clinical Trial. JAMA NETWORK OPEN, 4 (12). e2136726-.

Ray, Stephen (2022) Febrile coma in Malawian children. PhD thesis, University of Liverpool.

Hanachi, Mariem, Kiran, Anmol ORCID: 0000-0003-2680-2303, Cornick, Jennifer, Harigua-Souiai, Emna, Everett, Dean, Benkahla, Alia and Souiai, Oussama (2020) Genomic Characteristics of Invasive Streptococcus pneumoniae Serotype 1 in New Caledonia Prior to the Introduction of PCV13. Bioinformatics and Biology Insights, 14. p. 117793222096210.

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Cornick, Jennifer, Musicha, Patrick, Peno, Chikondi, Seager, Ezgi, Tam, Pui-Ying Iroh, Bilima, Sithembile, Bennett, Aisleen, Kennedy, Neil, Feasey, Nicholas, Heinz, Eva et al (show 1 more authors) and Cain, Amy K (2021) Genomic investigation of a suspected Klebsiella pneumoniae outbreak in a neonatal care unit in sub- Saharan Africa. MICROBIAL GENOMICS, 7 (11).

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Azarian, Taj, Mitchell, Patrick K, Georgieva, Maria, Thompson, Claudette M, Ghouila, Amel, Pollard, Andrew J, von Gottberg, Anne, du Plessis, Mignon, Antonio, Martin, Kwambana-Adams, Brenda A et al (show 17 more authors) , Clarke, Stuart C, Everett, Dean, Cornick, Jennifer, Sadowy, Ewa, Hryniewicz, Waleria, Skoczynska, Anna, Moisi, Jennifer C, McGee, Lesley, Beail, Bernard, Metcalf, Benjamin J, Breiman, Robert F, Ho, PL, Reid, Raymond, O'Brien, Katherine L, Gladstone, Rebecca A, Bentley, Stephen D and Hanage, William P (2018) Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. PLOS PATHOGENS, 14 (11). e1007438-.

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van Tonder, Andries J, Gladstone, Rebecca A, Lo, Stephanie W, Nahm, Moon H, du Plessis, Mignon, Cornick, Jennifer, Kwambana-Adams, Brenda, Madhi, Shabir A, Hawkins, Paulina A, Benisty, Rachel et al (show 8 more authors) , Dagan, Ron, Everett, Dean, Antonio, Martin, Klugman, Keith P, von Gottbere, Anne, Breiman, Robert F, McGee, Lesley and Bentley, Stephen D (2019) Putative novel <i>cps</i> loci in a large global collection of pneumococci. MICROBIAL GENOMICS, 5 (7).

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Ndlangisa, Kedibone M, du Plessis, Mignon, Lo, Stephanie, de Gouveia, Linda, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Antonio, Martin, Kwambana-Adams, Brenda, Cornick, Jennifer, Everett, Dean B, Dagan, Ron et al (show 32 more authors) , Hawkins, Paulina A, Beall, Bernard, Corso, Alejandra, Almeida, Samanta Cristine Grassi, Ochoa, Theresa J, Obaro, Stephen, Shakoor, Sadia, Donkor, Eric S, Gladstone, Rebecca A, Ho, Pak Leung, Paragi, Metka, Doiphode, Sanjay, Srifuengfung, Somporn, Ford, Rebecca, Moisi, Jennifer, Saha, Samir K, Bigogo, Godfrey, Sigauque, Betuel, Eser, Ozgen Koseoglu, Elmdaghri, Naima, Titov, Leonid, Turner, Paul, Kumar, KL Ravi, Kandasamy, Rama, Egorova, Ekaterina, Ip, Margaret, Breiman, Robert F, Klugman, Keith P, McGee, Lesley, Bentley, Stephen D, von Gottberg, Anne and Con, Global Pneumococcal Sequencing (2022) A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. MICROBIAL GENOMICS, 8 (4).

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Barnes, Kayla G ORCID: 0000-0002-8291-4388, Levy, Joshua I ORCID: 0000-0001-7573-7793, Gauld, Jillian, Rigby, Jonathan ORCID: 0000-0001-5143-0981, Kanjerwa, Oscar, Uzzell, Christopher B ORCID: 0000-0002-4204-3485, Chilupsya, Chisomo, Anscombe, Catherine, Tomkins-Tinch, Christopher ORCID: 0000-0002-9114-6421, Mbeti, Omar et al (show 16 more authors) , Cairns, Edward, Thole, Herbert, McSweeney, Shannon, Chibwana, Marah G ORCID: 0000-0002-8940-3855, Ashton, Philip M, Jere, Khuzwayo C ORCID: 0000-0003-3376-8529, Meschke, John Scott, Diggle, Peter, Cornick, Jennifer, Chilima, Benjamin, Jambo, Kondwani, Andersen, Kristian G ORCID: 0000-0001-6431-5982, Kawalazira, Gift, Paterson, Steve ORCID: 0000-0002-1307-2981, Nyirenda, Tonney S and Feasey, Nicholas ORCID: 0000-0003-4041-1405 (2023) Utilizing river and wastewater as a SARS-CoV-2 surveillance tool in settings with limited formal sewage systems. Nature communications, 14 (1). 7883-.

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Barnes, Kayla ORCID: 0000-0002-8291-4388, Levy, Joshua, Andersen, Kristian ORCID: 0000-0001-6431-5982, Gauld, Jillian, Rigby, Jonathan, Kanjerwa, Oscar, Uzzell, Christopher ORCID: 0000-0002-4204-3485, Chilupsya, Chisomo, Anscombe, Catherine, Tomkins-Tinch, Christopher ORCID: 0000-0002-9114-6421 et al (show 16 more authors) , Mbeti, Omar, Cairns, Edward, Thole, Herbert, McSweeney, Shannon, Chibwana, Marah, Ashton, Philip, Jere, Khuzwayo ORCID: 0000-0003-3376-8529, Meschke, John, Diggle, Peter, Cornick, Jennifer, Jambo, kondwani, Kawalazira, Gift, Paterson, Steve ORCID: 0000-0002-1307-2981, Nyirenda, Tonney, Feasey, Nicholas ORCID: 0000-0003-4041-1405 and Chilima, Benjamin (2023) Utilizing river and wastewater as a SARS-CoV-2 surveillance tool to predict trends and identify variants of concern in settings with limited formal sewage systems. [Preprint]

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Barnes, Kayla ORCID: 0000-0002-8291-4388, Levy, Joshua, Andersen, Kristian ORCID: 0000-0001-6431-5982, Gauld, Jillian, Rigby, Jonathan, Kanjerwa, Oscar, Uzzell, Christopher ORCID: 0000-0002-4204-3485, Chilupsya, Chisomo, Anscombe, Catherine, Tomkins-Tinch, Christopher ORCID: 0000-0002-9114-6421 et al (show 16 more authors) , Mbeti, Omar, Cairns, Edward, Thole, Herbert, McSweeney, Shannon, Chibwana, Marah, Ashton, Philip, Jere, Khuzwayo ORCID: 0000-0003-3376-8529, Meschke, John, Diggle, Peter, Cornick, Jennifer, Jambo, Kondwani, Kawalazira, Gift, Paterson, Steve ORCID: 0000-0002-1307-2981, Nyirenda, Tonney, Feasey, Nicholas ORCID: 0000-0003-4041-1405 and Chilima, Benjamin (2023) Utilizing river and wastewater as a SARS-CoV-2 surveillance tool to predict trends and identify variants of concern in settings with limited formal sewage systems. [Preprint]

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Stenhouse, George E ORCID: 0000-0002-9681-9242, Jere, Khuzwayo C ORCID: 0000-0003-3376-8529, Peno, Chikondi, Bengtsson, Rebecca J, Chinyama, End, Mandolo, Jonathan, Cain, Amy, Iturriza-Gomara, Miren ORCID: 0000-0001-5816-6423, Bar-Zeev, Naor ORCID: 0000-0003-0570-4624, Cunliffe, Nigel A ORCID: 0000-0002-5449-4988 et al (show 2 more authors) , Cornick, Jennifer and Baker, Kate S ORCID: 0000-0001-5850-1949 (2021) Whole genome sequence analysis of<i> Shigella</i> from Malawi identifies fluoroquinolone resistance. MICROBIAL GENOMICS, 7 (5). 000532-.

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Nzoyikorera, Nehemie, Diawara, Idrissa, Fresia, Pablo, Maaloum, Fakhreddine, Katfy, Khalid, Nayme, Kaotar, Maaloum, Mossaab, Cornick, Jennifer, Chaguza, Chrispin ORCID: 0000-0002-2108-1757, Timinouni, Mohammed et al (show 3 more authors) , Belabess, Houria, Zerouali, Khalid and Elmdaghri, Naima (2021) Whole genomic comparative analysis of <i>Streptococcus pneumoniae</i> serotype 1 isolates causing invasive and non-invasive infections among children under 5 years in Casablanca, Morocco. BMC GENOMICS, 22 (1). 39-.

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Anscombe, Catherine, Lissauer, Samantha, Thole, Herbert, Rylance, Jamie, Dula, Dingase, Menyere, Mavis, Kutambe, Belson, van der Veer, Charlotte, Phiri, Tamara, Banda, Ndaziona et al (show 14 more authors) , Mndolo, Kwazizira, Mponda, Kelvin, Phiri, Chimota, Mallewa, Jane, Nyirenda, Mulinda, Katha, Grace, Mwandumba, Henry, Gordon, Stephen B, Jambo, Kondwani C ORCID: 0000-0002-3195-2210, Cornick, Jennifer, Feasey, Nicholas, Barnes, Kayla G, Morton, Ben and Ashton, Philip M (2023) A comparison of four epidemic waves of COVID-19 in Malawi; an observational cohort study. BMC INFECTIOUS DISEASES, 23 (1). 79-.