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Nicholls, Samuel M, Poplawski, Radoslaw, Bull, Matthew J, Underwood, Anthony, Chapman, Michael, Abu-Dahab, Khalil, Taylor, Ben, Colquhoun, Rachel M, Rowe, Will PM, Jackson, Ben et al (show 13 more authors) , Hill, Verity, O’Toole, Áine, Rey, Sara, Southgate, Joel, Amato, Roberto, Livett, Rich, Gonçalves, Sónia, Harrison, Ewan M, Peacock, Sharon J, Aanensen, David M, Rambaut, Andrew, Connor, Thomas R and Loman, Nicholas J (2021) CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance. Genome Biology, 22 (1).

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du Plessis, Louis ORCID: 0000-0003-0352-6289, McCrone, John T ORCID: 0000-0002-9846-8917, Zarebski, Alexander E ORCID: 0000-0003-1824-7653, Hill, Verity ORCID: 0000-0002-3509-8146, Ruis, Christopher ORCID: 0000-0003-0977-5534, Gutierrez, Bernardo ORCID: 0000-0002-9220-2739, Raghwani, Jayna ORCID: 0000-0001-8538-4995, Ashworth, Jordan ORCID: 0000-0003-1740-7475, Colquhoun, Rachel ORCID: 0000-0002-5577-9897, Connor, Thomas R ORCID: 0000-0003-2394-6504 et al (show 17 more authors) , Faria, Nuno R ORCID: 0000-0001-8839-2798, Jackson, Ben ORCID: 0000-0002-9981-0649, Loman, Nicholas J ORCID: 0000-0002-9843-8988, O'Toole, Áine ORCID: 0000-0001-8083-474X, Nicholls, Samuel M ORCID: 0000-0003-4081-065X, Parag, Kris V ORCID: 0000-0002-7806-3605, Scher, Emily ORCID: 0000-0002-5401-5879, Vasylyeva, Tetyana I, Volz, Erik M ORCID: 0000-0001-6268-8937, Watts, Alexander ORCID: 0000-0002-2675-3460, Bogoch, Isaac I, Khan, Kamran ORCID: 0000-0003-4367-960X, COVID-19 Genomics UK (COG-UK) Consortium, , Aanensen, David M ORCID: 0000-0001-6688-0854, Kraemer, Moritz UG ORCID: 0000-0001-8838-7147, Rambaut, Andrew ORCID: 0000-0003-4337-3707 and Pybus, Oliver G ORCID: 0000-0002-8797-2667 (2021) Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science (New York, N.Y.), 371 (6530). pp. 708-712.

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Volz, Erik, Hill, Verity, McCrone, John T, Price, Anna, Jorgensen, David, O'Toole, Áine, Southgate, Joel, Johnson, Robert, Jackson, Ben, Nascimento, Fabricia F et al (show 22 more authors) , Rey, Sara M, Nicholls, Samuel M, Colquhoun, Rachel M, da Silva Filipe, Ana, Shepherd, James, Pascall, David J ORCID: 0000-0002-7543-0860, Shah, Rajiv, Jesudason, Natasha, Li, Kathy, Jarrett, Ruth ORCID: 0000-0003-0390-3478, Pacchiarini, Nicole, Bull, Matthew, Geidelberg, Lily, Siveroni, Igor, COG-UK Consortium, , Goodfellow, Ian, Loman, Nicholas J, Pybus, Oliver G, Robertson, David L, Thomson, Emma C, Rambaut, Andrew and Connor, Thomas R (2021) Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity. Cell, 184 (1). 64-75.e11.

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Jackson, Ben, Boni, Maciej F, Bull, Matthew J, Colleran, Amy, Colquhoun, Rachel M, Darby, Alistair C ORCID: 0000-0002-3786-6209, Haldenby, Sam, Hill, Verity, Lucaci, Anita, McCrone, John T et al (show 14 more authors) , Nicholls, Samuel M, O’Toole, Áine, Pacchiarini, Nicole, Poplawski, Radoslaw, Scher, Emily, Todd, Flora ORCID: 0000-0001-5293-6394, Webster, Hermione J, Whitehead, Mark ORCID: 0000-0002-0452-1511, Wierzbicki, Claudia ORCID: 0000-0001-7266-2597, Loman, Nicholas J, Connor, Thomas R, Robertson, David L, Pybus, Oliver G and Rambaut, Andrew (2021) Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic. Cell, 184 (20). 5179-+.

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Lythgoe, Katrina A ORCID: 0000-0002-7089-7680, Hall, Matthew ORCID: 0000-0002-2671-3864, Ferretti, Luca ORCID: 0000-0001-7578-7301, de Cesare, Mariateresa ORCID: 0000-0002-9847-1526, MacIntyre-Cockett, George, Trebes, Amy ORCID: 0000-0002-3715-9109, Andersson, Monique ORCID: 0000-0003-0619-1074, Otecko, Newton, Wise, Emma L ORCID: 0000-0002-0279-3900, Moore, Nathan ORCID: 0000-0002-4279-2443 et al (show 26 more authors) , Lynch, Jessica ORCID: 0000-0003-2015-9986, Kidd, Stephen ORCID: 0000-0002-4504-4600, Cortes, Nicholas, Mori, Matilde ORCID: 0000-0001-9012-1911, Williams, Rebecca ORCID: 0000-0002-8557-6337, Vernet, Gabrielle ORCID: 0000-0001-9887-2824, Justice, Anita, Green, Angie ORCID: 0000-0003-4386-9972, Nicholls, Samuel M ORCID: 0000-0003-4081-065X, Ansari, M Azim ORCID: 0000-0003-2790-8353, Abeler-Dörner, Lucie ORCID: 0000-0003-3662-4192, Moore, Catrin E ORCID: 0000-0002-8639-9846, Peto, Timothy EA ORCID: 0000-0003-3477-8307, Eyre, David W, Shaw, Robert ORCID: 0000-0003-3449-5876, Simmonds, Peter, Buck, David, Todd, John A ORCID: 0000-0003-2740-8148, Connor, Thomas R ORCID: 0000-0003-2394-6504, Ashraf, Shirin ORCID: 0000-0002-6468-0258, da Silva Filipe, Ana ORCID: 0000-0002-9442-2903, Shepherd, James ORCID: 0000-0003-3915-048X, Thomson, Emma C ORCID: 0000-0003-1482-0889, Bonsall, David ORCID: 0000-0003-2187-0550, Fraser, Christophe ORCID: 0000-0003-2399-9657 and Golubchik, Tanya ORCID: 0000-0003-2765-9828 (2021) SARS-CoV-2 within-host diversity and transmission. Science, 372 (6539).