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Aljabr, Waleed ORCID: 0000-0002-9385-2776, Alruwaili, Muhannad, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alrezaihi, Abdulrahman, Harrison, Abbie Jasmine, Ryan, Yan ORCID: 0000-0002-4708-5350, Bentley, Eleanor, Jones, Benjamin, Alhatlani, Bader Y, AlShahrani, Dayel et al (show 19 more authors) , Mahmood, Zana ORCID: 0000-0001-6000-6648, Rickett, Natasha Y, Alosaimi, Bandar, Naeem, Asif, Alamri, Saad, Alsran, Hadel, Hamed, Maaweya E, Dong, Xiaofeng, Assiri, Abdullah M, Alrasheed, Abdullah R, Hamza, Muaawia, Carroll, Miles W, Gemmell, Matthew, Darby, Alistair ORCID: 0000-0002-3786-6209, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Stewart, James P ORCID: 0000-0002-8928-2037, Matthews, David A, Davidson, Andrew D and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2021) Amplicon and Metagenomic Analysis of Middle East Respiratory Syndrome (MERS) Coronavirus and the Microbiome in Patients with Severe MERS. mSphere, 6 (4). e0021921-e0021921.

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Moore, Shona ORCID: 0000-0001-8610-2806, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Dong, Xiaofeng, Pullan, Steven, Carter, Daniel, Bewley, Kevin ORCID: 0000-0002-9078-6734, Zhao, Qin, Sun, Yani, Hartley, Catherine et al (show 20 more authors) , Zhou, En-min, Solomon, Tom, Beadsworth, Michael, Cruise, James, Bogaert, Debby, Crook, Derrick ORCID: 0000-0002-0590-2850, Matthews, David ORCID: 0000-0003-4611-8795, Davidson, Andrew, Mahmood, Zana ORCID: 0000-0001-6000-6648, Aljabr, Waleed, Druce, Julian, Vipond, Richard, Ng, Lisa, Renia, Laurent, Openshaw, Peter, Baillie, Kenneth, Carroll, Miles, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance and Hiscox, Julian (2020) Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19. medrxiv.

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Moore, Shona C ORCID: 0000-0001-8610-2806, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Randle, Nadine ORCID: 0000-0002-3775-9585, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Hartley, Catherine, Haldenby, Sam, Dong, Xiaofeng, Alrezaihi, Abdulrahman, Almsaud, Mai et al (show 36 more authors) , Bentley, Eleanor, Clark, Jordan, Garcia-Dorival, Isabel ORCID: 0000-0002-5654-5662, Gilmore, Paul, Han, Ximeng, Jones, Benjamin, Luu, Lisa ORCID: 0000-0002-7748-5961, Sharma, Parul, Shawli, Ghada, Sun, Yani, Zhao, Qin, Pullan, Steven T, Carter, Daniel P, Bewley, Kevin, Dunning, Jake, Zhou, En-min, Solomon, Tom ORCID: 0000-0001-7266-6547, Beadsworth, Michael, Cruise, James, Crook, Derrick W, Matthews, David A, Davidson, Andrew D, Mahmood, Zana ORCID: 0000-0001-6000-6648, Aljabr, Waleed ORCID: 0000-0002-9385-2776, Druce, Julian, Vipond, Richard, Ng, Lisa ORCID: 0000-0003-4071-5222, Renia, Laurent, Openshaw, Peter JM, Baillie, J Kenneth, Carroll, Miles W, Stewart, James ORCID: 0000-0002-8928-2037, Darby, Alistair ORCID: 0000-0002-3786-6209, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance ORCID: 0000-0002-0778-1693 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2020) Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism. VIRUSES-BASEL, 12 (10). 1164-.

Dong, Xiaofeng and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2023) Analysis of SARS-CoV-2 Population Genetics from Samples Associated with Huanan Market and Early Cases Identifies Substitutions Associated with Future Variants of Concern. Viruses, 15 (8). p. 1728.

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Prince, Tessa ORCID: 0000-0002-8796-2629, Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Randle, Nadine ORCID: 0000-0002-3775-9585, Hartley, Catherine, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Jones, Benjamin, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Baillie, J Kenneth, Openshaw, Peter JM et al (show 9 more authors) , Turtle, Lance, Hughes, Grant L, Anderson, Enyia R, Patterson, Edward I, Druce, Julian, Screaton, Gavin, Carroll, Miles W, Stewart, James P ORCID: 0000-0002-8928-2037 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2022) Analysis of SARS-CoV-2 in Nasopharyngeal Samples from Patients with COVID-19 Illustrates Population Variation and Diverse Phenotypes, Placing the Growth Properties of Variants of Concern in Context with Other Lineages. MSPHERE, 7 (3). e0091321-.

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Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Prince, Tessa ORCID: 0000-0002-8796-2629, Randle, Nadine ORCID: 0000-0002-3775-9585, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Salguero, Francisco J, Tree, Julia, Vamos, Ecaterina, Nelson, Charlotte et al (show 11 more authors) , Clark, Jordan, Ryan, Yan, Stewart, James P ORCID: 0000-0002-8928-2037, Semple, Malcolm G ORCID: 0000-0001-9700-0418, Baillie, J Kenneth, Openshaw, Peter JM, Turtle, Lance ORCID: 0000-0002-0778-1693, Matthews, David A, Carroll, Miles W, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2022) Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers. GIGASCIENCE, 11. giac045-.

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Bosworth, Andrew, Rickett, Natasha Y, Dong, Xiaofeng, Ng, Lisa FP ORCID: 0000-0003-4071-5222, Garcia-Dorival, Isabel ORCID: 0000-0002-5654-5662, Matthews, David A, Fletcher, Tom, Jacobs, Michael, Thomson, Emma C, Carroll, Miles W et al (show 1 more authors) and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2021) Analysis of an Ebola virus disease survivor whose host and viral markers were predictive of death indicates the effectiveness of medical countermeasures and supportive care. GENOME MEDICINE, 13 (1). 5-.

Esemu, Seraphine N, Dong, Xiaofeng, Kfusi, Achah J, Hartley, Catherine S, Ndip, Roland N, Ndip, Lucy M, Darby, Alistair C ORCID: 0000-0002-3786-6209, Post, Rory J and Makepeace, Benjamin L ORCID: 0000-0002-6100-6727 (2019) Aquatic Hemiptera in Southwest Cameroon: Biodiversity of Potential Reservoirs of <i>Mycobacterium ulcerans</i> and Multiple <i>Wolbachia</i> Sequence Types Revealed by Metagenomics. DIVERSITY-BASEL, 11 (12). p. 225.

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Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Dong, Xiaofeng, Shapanis, Andrew George, Gardner, Aaron, Harding, Nicholas, Legebeke, Jelmer, Lord, Jenny, Vallejo, Andres F, Poole, Stephen, Brendish, Nathan J et al (show 10 more authors) , Hartley, Catherine, Williams, Anthony P, Wheway, Gabrielle, Polak, Marta E, Strazzeri, Fabio, Schofield, James PR, Skipp, Paul J, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Clark, Tristan W and Baralle, Diana (2022) Blood gene expression predicts intensive care unit admission in hospitalised patients with COVID-19. Frontiers in immunology, 13. p. 988685.

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Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Rzeszutek, Aleksandra M, Pilgrim, Jack, Bullock, Katie, Saunders, Geoffrey, Northey, Josh, Dong, Xiaofeng, Ryan, Yan ORCID: 0000-0002-4708-5350 et al (show 24 more authors) , Reynolds, Helen ORCID: 0000-0001-7443-4520, Tetlow, Michelle, Walker, Lauren E, FitzGerald, Richard, Hale, Colin, Lyon, Rebecca, Woods, Christie, Ahmad, Shazaad, Hadjiyiannakis, Dennis, Periselneris, Jimstan, Knox, Emma, Middleton, Calley, Lavelle-Langham, Lara, Shaw, Victoria ORCID: 0000-0002-0429-0186, Greenhalf, William, Edwards, Thomas, Lalloo, David G ORCID: 0000-0001-7680-2200, Edwards, Christopher J, Darby, Alistair C ORCID: 0000-0002-3786-6209, Carroll, Miles W, Griffiths, Gareth, Khoo, Saye H ORCID: 0000-0002-2769-0967, Hiscox, Julian A ORCID: 0000-0002-6582-0275 and Fletcher, Thomas (2022) Characterisation of SARS-CoV-2 genomic variation in response to molnupiravir treatment in the AGILE Phase IIa clinical trial. NATURE COMMUNICATIONS, 13 (1). 7284-.

Wu, Yunfei, Dong, Xiaofeng and Kadowaki, Tatsuhiko ORCID: 0000-0002-4622-1218 (2017) Characterization of the Copy Number and Variants of Deformed Wing Virus (DWV) in the Pairs of Honey Bee Pupa and Infesting <i>Varroa destructor</i> or <i>Tropilaelaps mercedesae</i>. FRONTIERS IN MICROBIOLOGY, 8 (AUG). 1558-.

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Salguero, Francisco J, White, Andrew D, Slack, Gillian S, Fotheringham, Susan A, Bewley, Kevin R, Gooch, Karen E, Longet, Stephanie, Humphries, Holly E, Watson, Robert J, Hunter, Laura et al (show 54 more authors) , Ryan, Kathryn A, Hall, Yper, Sibley, Laura, Sarfas, Charlotte, Allen, Lauren, Aram, Marilyn, Brunt, Emily, Brown, Phillip, Buttigieg, Karen R, Cavell, Breeze E, Cobb, Rebecca, Coombes, Naomi S, Darby, Alistair ORCID: 0000-0002-3786-6209, Daykin-Pont, Owen, Elmore, Michael J, Garcia-Dorival, Isabel ORCID: 0000-0002-5654-5662, Gkolfinos, Konstantinos, Godwin, Kerry J, Gouriet, Jade, Halkerston, Rachel, Harris, Debbie J, Hender, Thomas, Ho, Catherine MK, Kennard, Chelsea L, Knott, Daniel, Leung, Stephanie, Lucas, Vanessa, Mabbutt, Adam, Morrison, Alexandra L, Nelson, Charlotte, Ngabo, Didier, Paterson, Jemma, Penn, Elizabeth J, Pullan, Steve, Taylor, Irene, Tipton, Tom, Thomas, Stephen, Tree, Julia A, Turner, Carrie, Vamos, Edith, Wand, Nadina, Wiblin, Nathan R, Charlton, Sue, Dong, Xiaofeng, Hallis, Bassam, Pearson, Geoffrey, Rayner, Emma L, Nicholson, Andrew G, Funnell, Simon G, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Dennis, Mike J, Gleeson, Fergus V, Sharpe, Sally and Carroll, Miles W (2021) Comparison of rhesus and cynomolgus macaques as an infection model for COVID-19. NATURE COMMUNICATIONS, 12 (1). 1260-.

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Watson, Robert J, Tree, Julia, Fotheringham, Susan A, Hall, Yper, Dong, Xiaofeng, Steeds, Kimberley, Gouriet, Jade, Salguero, Francisco J, Burton, Christopher, Pitman, James et al (show 8 more authors) , Easterbrook, Linda, Richards, Kevin S, Burton, Jane, Bewley, Kevin, Bruce, Christine, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Carroll, Miles W and Funnell, Simon GP (2021) Dose-Dependent Response to Infection with Ebola Virus in the Ferret Model and Evidence of Viral Evolution in the Eye. JOURNAL OF VIROLOGY, 95 (24). e0083321-.

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Alrezaihi, Abdulrahman, Penrice-Randal, Rebekah, Dong, Xiaofeng, Prince, Tessa, Randle, Nadine, Semple, Malcolm G, Openshaw, Peter JM, MacGill, Tracy, Myers, Todd, Orr, Robert et al (show 7 more authors) , Zakotnik, Samo, Suljič, Alen, Avšič-Županc, Tatjana, Petrovec, Miroslav, Korva, Miša, AlJabr, Waleed and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2023) Enrichment of SARS-CoV-2 sequence from nasopharyngeal swabs whilst identifying the nasal microbiome. Journal of Clinical Virology, 171. p. 105620.

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Alrezaihi, Abdulrahman, Penrice-Randal, Rebekah, Dong, Xiaofeng, Prince, Tessa, Randle, Nadine, Semple, Malcolm ORCID: 0000-0001-9700-0418, Openshaw, Peter, Investigators, ISARIC4C, Zakotnik, Samo, Suljič, Alen et al (show 5 more authors) , Avšič-Županc, Tatjana, Petrovec, Miroslav, Korva, Miša, Aljabr, Waleed and Hiscox, Julian ORCID: 0000-0002-6582-0275 (2023) Enrichment of Sars-Cov-2 and Seasonal Coronavirus Sequence from Nasopharyngeal Swabs Whilst Maintaining the Background Context of the Microbiome. SSRN.

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Legebeke, Jelmer, Lord, Jenny, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Vallejo, Andres F, Poole, Stephen, Brendish, Nathan J, Dong, Xiaofeng, Hartley, Catherine, Holloway, John W, Lucas, Jane S et al (show 10 more authors) , Williams, Anthony P, Wheway, Gabrielle, Strazzeri, Fabio, Gardner, Aaron, Schofield, James PR, Skipp, Paul J, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Polak, Marta E, Clark, Tristan W and Baralle, Diana (2022) Evaluating the Immune Response in Treatment-Naive Hospitalised Patients With Influenza and COVID-19. FRONTIERS IN IMMUNOLOGY, 13. 853265-.

Dong, Xiaofeng, Chaisiri, Kittipong ORCID: 0000-0001-6795-3541, Xia, Dong, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Fang, Yongxiang ORCID: 0000-0002-4514-5292, Donnelly, Martin ORCID: 0000-0001-5218-1497, Kadowaki, Tatsuhiko ORCID: 0000-0002-4622-1218, McGarry, John, Darby, Alistair ORCID: 0000-0002-3786-6209 and Makepeace, Benjamin ORCID: 0000-0002-6100-6727 (2018) Genomes of trombidid mites reveal novel predicted allergens and laterally-transferred genes associated with secondary metabolism.

Dong, Xiaofeng, Chaisiri, Kittipong, Xia, Dong, Armstrong, Stuart D ORCID: 0000-0002-3862-1801, Fang, Yongxiang ORCID: 0000-0002-4514-5292, Donnelly, Martin J, Kadowaki, Tatsuhiko ORCID: 0000-0002-4622-1218, McGarry, John W, Darby, Alistair C ORCID: 0000-0002-3786-6209 and Makepeace, BL ORCID: 0000-0002-6100-6727 (2018) Genomes of trombidid mites reveal novel predicted allergens and laterally-transferred genes associated with secondary metabolism. GigaScience, 7 (12).

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Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah, Prince, Tessa, Randle, Nadine, Salguero, Javier, Tree, Julia, Vamos, Ecaterina, Nelson, Charlotte, Stewart, James ORCID: 0000-0002-8928-2037 et al (show 10 more authors) , Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth, Openshaw, Peter, Turtle, Lance, Matthews, David, Carroll, Miles, Darby, Alistair ORCID: 0000-0002-3786-6209, Hiscox, Julian ORCID: 0000-0002-6582-0275, ISARIC4C Investigators, and COVID-19 Genomics UK (COG-UK) Consortium, (2021) Identification and quantification of SARS-CoV-2 leader subgenomic mRNA gene junctions in nasopharyngeal samples shows phasic transcription in animal models of COVID-19 and dysregulation at later time points that can also be identified in humans. bioRxiv.

Bosworth, Andrew, Dowall, Stuart D, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Liu, Xuan, Dong, Xiaofeng, Bruce, Christine B, Ng, Lisa FP ORCID: 0000-0003-4071-5222, Carroll, Miles W, Hewson, Roger and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2019) Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells. VIRUSES-BASEL, 11 (11). E1023-.

Dong, Xiaofeng, Kashio, Makiko, Peng, Guangda, Wang, Xinyue, Tominaga, Makoto and Kadowaki, Tatsuhiko ORCID: 0000-0002-4622-1218 (2016) Isoform-specific modulation of the chemical sensitivity of conserved TRPA1 channel in the major honeybee ectoparasitic mite, <i>Tropilaelaps mercedesae</i>. OPEN BIOLOGY, 6 (6). 160042-.

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Dong, Xiaofeng, Tree, Julia, Banadyga, Logan, He, Shihua, Zhu, Wenjun, Tipton, Tom, Gouriet, Jade, Qiu, Xiangguo, Elmore, Michael JJ, Hall, Yper et al (show 2 more authors) , Carroll, Miles and Hiscox, Julian AA ORCID: 0000-0002-6582-0275 (2023) Linked Mutations in the Ebola Virus Polymerase Are Associated with Organ Specific Phenotypes. MICROBIOLOGY SPECTRUM, 11 (2). e0415422-.

Dong, Xiaofeng (2016) Molecular ecological characterization of a honey bee ectoparasitic mite, Tropilaelaps mercedesae. PhD thesis, University of Liverpool.

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Zhou, Jie, Peacock, Thomas P, Brown, Jonathan C, Goldhill, Daniel H, Elrefaey, Ahmed ME, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Cowton, Vanessa M, De Lorenzo, Giuditta, Furnon, Wilhelm, Harvey, William T et al (show 19 more authors) , Kugathasan, Ruthiran, Frise, Rebecca, Baillon, Laury, Lassaunière, Ria, Thakur, Nazia, Gallo, Giulia, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Dong, Xiaofeng, Randle, Nadine P ORCID: 0000-0002-3775-9585, Sweeney, Fiachra, Glynn, Martha C, Quantrill, Jessica L, McKay, Paul F, Patel, Arvind H, Palmarini, Massimo, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Bailey, Dalan and Barclay, Wendy S (2022) Mutations that adapt SARS-CoV-2 to mink or ferret do not increase fitness in the human airway. Cell Reports, 38 (6). p. 110344.

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Zhou, Jie, Peacock, Thomas ORCID: 0000-0001-7077-2928, Brown, Jonathan ORCID: 0000-0001-6849-3962, Goldhill, Daniel, Elrefaey, Ahmed, Penrice-Randal, Rebekah, Cowton, Vanessa, De Lorenzo, Giuditta, Furnon, Wilhelm, Harvey, William et al (show 19 more authors) , Kugathasan, Ruthiran, Frise, Rebecca, Baillon, Laury, Lassauniere, Ria, Thakur, Nazia, Gallo, Giulia, Goldswain, Hannah ORCID: 0000-0003-4194-8714, Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Dong, Xiaofeng, Randle, Nadine ORCID: 0000-0002-3775-9585, Sweeney, Fiachra, Glynn, Martha, Quantrill, Jessica, McKay, Paul, Patel, Arvind, Palmarini, Massimo, Hiscox, Julian ORCID: 0000-0002-6582-0275, Bailey, Dalan and Barclay, Wendy ORCID: 0000-0002-3948-0895 (2021) Mutations that adapt SARS-CoV-2 to mustelid hosts do not increase fitness in the human airway. Cell Rep, 38 (6). 110344-.

Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Hartley, Catherine, Beliavskaia, Alexandra, Dong, Xiaofeng, Brandner-Garrod, Luke, Whitten, Miranda and Bell-Sakyi, Lesley ORCID: 0000-0002-7305-0477 (2022) New Cell Lines Derived from Laboratory Colony Triatoma infestans and Rhodnius prolixus, Vectors of Trypanosoma cruzi, Do Not Harbour Triatoma Virus. INSECTS, 13 (10). 906-.

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Goldswain, Hannah, Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Shawli, Ghada T, Prince, Tessa ORCID: 0000-0002-8796-2629, Williamson, Maia Kavanagh, Raghwani, Jayna, Randle, Nadine ORCID: 0000-0002-3775-9585, Jones, Benjamin et al (show 20 more authors) , Donovan-Banfield, I'ah ORCID: 0000-0002-5124-2427, Salguero, Francisco J, Tree, Julia A, Hall, Yper, Hartley, Catherine, Erdmann, Maximilian, Bazire, James, Jearanaiwitayakul, Tuksin, Semple, Malcolm G, Openshaw, Peter JM, Baillie, J Kenneth, ISARIC4C Investigators, , Emmett, Stevan R, Digard, Paul, Matthews, David A, Turtle, Lance, Darby, Alistair C ORCID: 0000-0002-3786-6209, Davidson, Andrew D, Carroll, Miles W and Hiscox, Julian A (2023) The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection. Genome biology, 24 (1). p. 47.

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Dong, Xiaofeng, Goldswain, Hannah, Penrice-Randal, Rebekah, Shawli, Ghada, Prince, Tessa, Williamson, Maia Kavanagh, Randle, Nadine, Jones, Benjamin, Salguero, Francisco, Tree, Julia et al (show 17 more authors) , Hall, Yper, Hartley, Catherine, Erdmann, Maximilian, Bazire, James, Jearanaiwitayakul, Tuksin, Semple, Malcolm ORCID: 0000-0001-9700-0418, Openshaw, Peter, Baille, Kenneth, Emmett, Stevan, Digard, Paul, Matthews, David, Turtle, Lance, Darby, Alistair, Davidson, Andrew, Carroll, Miles, Hiscox, Julian and ISARIC4C investigators, (2021) Rapid selection of P323L in the SARS-CoV-2 polymerase (NSP12) in humans and non-human primate models and confers a large plaque phenotype. [Preprint]

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Prince, Tessa, Dong, Xiaofeng, Penrice-Randal, Rebekah, Randle, Nadine, Hartley, Catherine, Goldswain, Hannah, Jones, Benjamin ORCID: 0000-0002-5162-9357, Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth ORCID: 0000-0001-5258-793X, Openshaw, Peter ORCID: 0000-0002-7220-2555 et al (show 10 more authors) , Turtle, Lance, Hughes, Grant ORCID: 0000-0002-7567-7185, Anderson, Enyia, Patterson, Edward, Druce, Julian, Screaton, Gavin, Carroll, Miles, Stewart, James, Hiscox, Julian and ISARIC4C Investigators, (2021) Sequence analysis of SARS-CoV-2 in nasopharyngeal samples from patients with COVID-19 illustrates population variation and diverse phenotypes, placing the in vitro growth properties of B.1.1.7 and B.1.351 lineage viruses in context. [Preprint]

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Clark, Jordan ORCID: 0000-0003-1790-7883, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Sharma, Parul, Kipar, Anja, Dong, Xiaofeng, Pennington, Shaun, Marriott, Amy, Colombo, Stefano, Davidson, Andrew, Williamson, Maia Kavanagh et al (show 16 more authors) , Matthews, David ORCID: 0000-0003-4611-8795, Turtle, Lance, Prince, Tessa ORCID: 0000-0002-8796-2629, Hughes, Grant, Patterson, Edward, Shawli, Ghada, Mega, Daniele, Subramaniam, Krishanthi, Sharp, Jo, McLaughlin, Lynn, Zhou, En-Min, Turner, Joseph ORCID: 0000-0001-6356-6595, Biagini, Giancarlo, Owen, Andrew, Hiscox, Julian and Stewart, James ORCID: 0000-0002-8928-2037 (2020) Sequential infection with influenza A virus followed by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) leads to more severe disease and encephalitis in a mouse model of COVID-19. bioRxiv.

Peng, Guangda, Kashio, Makiko, Li, Tianbang, Dong, Xiaofeng, Tominaga, Makoto and Kadowaki, Tatsuhiko ORCID: 0000-0002-4622-1218 (2016) TRPA1 Channels in <i>Drosophila</i> and Honey Bee Ectoparasitic Mites Share Heat Sensitivity and Temperature-Related Physiological Functions. FRONTIERS IN PHYSIOLOGY, 7 (OCT). 447-.

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Dorward, David A, Russell, Clark D, Um, In Hwa, Elshani, Mustafa, Armstrong, Stuart D ORCID: 0000-0002-3862-1801, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Millar, Tracey, Lerpiniere, Chris EB, Tagliavini, Giulia, Hartley, Catherine S et al (show 18 more authors) , Randle, Nadine P ORCID: 0000-0002-3775-9585, Gachanja, Naomi N, Potey, Philippe MD, Dong, Xiaofeng, Anderson, Alison M, Campbell, Victoria L, Duguid, Alasdair J, Al Qsous, Wael, BouHaidar, Ralph, Baillie, J Kenneth, Dhaliwal, Kevin, Wallace, William A, Bellamy, Christopher OC, Prost, Sandrine, Smith, Colin, Hiscox, Julian A ORCID: 0000-0002-6582-0275, Harrison, David J and Lucas, Christopher D (2021) Tissue-Specific Immunopathology in Fatal COVID-19. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 203 (2). pp. 192-201.

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Dong, Xiaofeng, Munoz-Basagoiti, Jordana, Rickett, Natasha Y, Pollakis, Georgios ORCID: 0000-0002-9659-5461, Paxton, William A ORCID: 0000-0001-5200-0801, Guenther, Stephan, Kerber, Romy, Ng, Lisa FP ORCID: 0000-0003-4071-5222, Elmore, Michael J, Magassouba, N'faly et al (show 3 more authors) , Carroll, Miles W, Matthews, David A and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2020) Variation around the dominant viral genome sequence contributes to viral load and outcome in patients with Ebola virus disease. GENOME BIOLOGY, 21 (1). 238-.

Sun, Jianying, Dong, Xiaofeng, Cao, Qinghe, Xu, Tao, Zhu, Mingku, Sun, Jian, Dong, Tingting, Ma, Daifu, Han, Yonghua and Li, Zongyun (2019) A systematic comparison of eight new plastome sequences from <i>Ipomoea</i> L. PeerJ, 7. e6563-e6563.