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Moore, Shona ORCID: 0000-0001-8610-2806, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Dong, Xiaofeng, Pullan, Steven, Carter, Daniel, Bewley, Kevin ORCID: 0000-0002-9078-6734, Zhao, Qin, Sun, Yani, Hartley, Catherine et al (show 20 more authors) , Zhou, En-min, Solomon, Tom, Beadsworth, Michael, Cruise, James, Bogaert, Debby, Crook, Derrick ORCID: 0000-0002-0590-2850, Matthews, David ORCID: 0000-0003-4611-8795, Davidson, Andrew, Mahmood, Zana ORCID: 0000-0001-6000-6648, Aljabr, Waleed, Druce, Julian, Vipond, Richard, Ng, Lisa, Renia, Laurent, Openshaw, Peter, Baillie, Kenneth, Carroll, Miles, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance and Hiscox, Julian (2020) Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19. medrxiv.

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Moore, Shona C ORCID: 0000-0001-8610-2806, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Alruwaili, Muhannad, Randle, Nadine ORCID: 0000-0002-3775-9585, Armstrong, Stuart ORCID: 0000-0002-3862-1801, Hartley, Catherine, Haldenby, Sam, Dong, Xiaofeng, Alrezaihi, Abdulrahman, Almsaud, Mai et al (show 36 more authors) , Bentley, Eleanor, Clark, Jordan, Garcia-Dorival, Isabel ORCID: 0000-0002-5654-5662, Gilmore, Paul, Han, Ximeng, Jones, Benjamin, Luu, Lisa ORCID: 0000-0002-7748-5961, Sharma, Parul, Shawli, Ghada, Sun, Yani, Zhao, Qin, Pullan, Steven T, Carter, Daniel P, Bewley, Kevin, Dunning, Jake, Zhou, En-min, Solomon, Tom ORCID: 0000-0001-7266-6547, Beadsworth, Michael, Cruise, James, Crook, Derrick W, Matthews, David A, Davidson, Andrew D, Mahmood, Zana ORCID: 0000-0001-6000-6648, Aljabr, Waleed ORCID: 0000-0002-9385-2776, Druce, Julian, Vipond, Richard, Ng, Lisa ORCID: 0000-0003-4071-5222, Renia, Laurent, Openshaw, Peter JM, Baillie, J Kenneth, Carroll, Miles W, Stewart, James ORCID: 0000-0002-8928-2037, Darby, Alistair ORCID: 0000-0002-3786-6209, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance ORCID: 0000-0002-0778-1693 and Hiscox, Julian A ORCID: 0000-0002-6582-0275 (2020) Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism. VIRUSES-BASEL, 12 (10). E1164-.

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National COVID Testing Scientific Advisory Panel, , Adams, Emily, Ainsworth, Mark, Anand, Rekha, Andersson, Monique, Auckland, Kathryn, Baillie, Kenneth, Barnes, Eleanor ORCID: 0000-0002-0860-0831, Beer, Sally, Bell, John et al (show 63 more authors) , Berry, Tamsin, Bibi, Sagida, Carroll, Miles, Chinnakannan, Senthil, Clutterbuck, Elizabeth, Cornall, Richard, Crook, Derrick ORCID: 0000-0002-0590-2850, De Silva, Thushan ORCID: 0000-0002-6498-9212, Dejnirattisai, Wanwisa, Dingle, Kate, Dold, Christina, Espinosa, Alexis, Eyre, David ORCID: 0000-0001-5095-6367, Farmer, Helen, Fernandez Mendoza, Maria, Georgiou, Dominique, Hoosdally, Sarah, Hunter, Alistair, Jeffrey, Katie, Klenerman, Paul ORCID: 0000-0003-4307-9161, Knight, Julian ORCID: 0000-0002-0377-5536, Knowles, Clarice, Kwok, Andrew, Leuschner, Ullrich, Levin, Robert, Liu, Chang, Lopez-Camacho, Cesar, Martinez Garrido, Jose Carlos, Matthews, Philippa, McGivern, Hannah ORCID: 0000-0003-3436-1536, Mentzer, Alexander ORCID: 0000-0002-4502-2209, Milton, Jonathan, Mongkolsapaya, Juthathip, Moore, Shona ORCID: 0000-0001-8610-2806, Oliveira, Marta, Pereira, Fiona, Perez Lopez, Elena, Peto, Timothy, Ploeg, Rutger, Pollard, Andrew, Prince, Tessa, Roberts, David, Rudkin, Justine, Sanchez, Veronica, Screaton, Gavin ORCID: 0000-0002-3549-4309, Screaton, Gavin ORCID: 0000-0001-9700-0418, Semple, Malcolm ORCID: 0000-0001-9700-0418, Skelly, Donal, Slon-Campos, Jose, Smith, Elliot Nathan, Sobrino Diaz, Alberto Jose, Staves, Julie, Stuart, David, Supasa, Piyada, Surik, Tomas, Thraves, Hannah, Tsang, Pat, Turtle, Lance, Walker, Sarah, Wang, Beibei, Washington, Charlotte, Watkins, Nicholas and Whitehouse, James (2020) Antibody testing for COVID-19: A report from the National COVID Scientific Advisory Panel. MedRxiv.

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Docherty, Annemarie, Mulholland, Rachel, Lone, Nazir ORCID: 0000-0003-2707-2779, Cheyne, Christopher, De Angelis, Daniela, Diaz-Ordaz, Karla, Donoghue, Cara, Drake, Thomas, Dunning, Jake ORCID: 0000-0002-4035-4562, Funk, Sebastian et al (show 20 more authors) , García-Fiñana, Marta, Girvan, Michelle, Hardwick, Hayley, Harrison, Janet, Ho, Antonia, Hughes, David ORCID: 0000-0002-1287-9994, Keogh, Ruth, Kirwan, Peter, Leeming, Gary, Nguyen-Van-Tam, Jonathan, Pius, Riinu, Russell, Clark, Spencer, Rebecca, Tom, Brian DM, Turtle, Lance, Openshaw, Peter JM, Baillie, Kenneth, Harrison, Ewen, Semple, Malcolm ORCID: 0000-0001-9700-0418 and for ISARIC4C investigators, (2020) Changes in UK hospital mortality in the first wave of COVID-19: the ISARIC WHO Clinical Characterisation Protocol prospective multicentre observational cohort study. medRxiv.

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Docherty, Annemarie, Mulholland, Rachel, Lone, Nazir I, Cheyne, Christopher, De Angelis, Daniela, Diaz-Ordaz, Karla, Donegan, Cara, Drake, Thomas, Dunning, Jake, Funk, Sebastian et al (show 19 more authors) , Garcia-Finana, Marta ORCID: 0000-0003-4939-0575, Girvan, Michelle, Hardwick, Hayley, Harrison, Janet, Ho, Antonia, Hughes, David ORCID: 0000-0002-1287-9994, Keogh, Ruth, Kirwan, Peter, Leeming, Gary ORCID: 0000-0002-5554-5302, Van-Tam, Jonathan, Pius, Riinu, Russell, Clark, Spencer, Rebecca, Tom, Brian, Turtle, Lance ORCID: 0000-0002-0778-1693, Openshaw, Peter, Baillie, J, Harrison, Ewen and Semple, Malcolm ORCID: 0000-0001-9700-0418 (2021) Changes in in-hospital mortality in the first wave of COVID-19: a multicentre prospective observational cohort study using the WHO Clinical Characterisation Protocol UK. LANCET RESPIRATORY MEDICINE, 9 (7). pp. 773-785.

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Green, Mark, Hungerford, Daniel ORCID: 0000-0002-9770-0163, Hughes, David ORCID: 0000-0002-1287-9994, Garcia-Fiñana, Marta, Turtle, Lance, Cheyne, Christopher, Ashton, Matthew, Leeming, Gary, Semple, Malcolm ORCID: 0000-0001-9700-0418, Singleton, Alex et al (show 1 more authors) and Buchan, Iain ORCID: 0000-0003-3392-1650 (2022) Changing patterns of SARS-CoV-2 infection through Delta and Omicron waves by vaccination status, previous infection and neighbourhood deprivation: A cohort analysis of 2.7M people. [Preprint]

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Swann, Olivia ORCID: 0000-0001-7386-2849, Holden, Karl, Turtle, Lance ORCID: 0000-0002-0778-1693, Pollock, Louisa ORCID: 0000-0002-4240-325X, Fairfield, Cameron ORCID: 0000-0001-7635-1868, Drake, Thomas, Seth, Sohan ORCID: 0000-0002-7464-4752, Egan, Conor ORCID: 0000-0001-8834-9247, Hardwick, Hayley ORCID: 0000-0003-3421-6435, Halpin, Sophie et al (show 18 more authors) , Girvan, Michelle, Donohue, Chloe ORCID: 0000-0001-6379-8214, Pritchard, Mark ORCID: 0000-0003-1726-8989, Patel, Latifa, Ladhani, Shamez, Sigfrid, Louise ORCID: 0000-0003-2764-1177, Sinha, Ian, Olliaro, Piero, Nguyen-Van-Tam, Jonathan, Horby, Peter, Merson, Laura, Carson, Gail, Dunning, Jake ORCID: 0000-0002-4035-4562, Openshaw, Peter JM, Baillie, Kenneth, Harrison, Ewen ORCID: 0000-0002-5018-3066, Docherty, Annemarie and Semple, Malcolm ORCID: 0000-0001-9700-0418 (2020) Clinical characteristics of children and young people hospitalised with covid-19 in the United Kingdom: prospective multicentre observational cohort study. MedRxiv.

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Russell, Clark Donald, Fairfield, Cameron, Drake, Thomas, Turtle, Lance ORCID: 0000-0002-0778-1693, Seaton, Andrew, Wootton, Dan ORCID: 0000-0002-5903-3881, Sigfrid, Louise ORCID: 0000-0003-2764-1177, Harrison, Ewen, Docherty, Annemarie, Silva, Thushan de et al (show 12 more authors) , Egan, Conor, Pius, Riinu, Hardwick, Hayley, Merson, Laura, Girvan, Michelle, Dunning, Jake ORCID: 0000-0002-4035-4562, Nguyen-Van-Tam, Jonathan, Openshaw, Peter, Baillie, Kenneth, Semple, Malcolm ORCID: 0000-0001-9700-0418, Ho, Antonia and Group, ISARIC4C Investigators (2021) Co-Infections, Secondary Infections, and Antimicrobial Usage in Hospitalised Patients with COVID-19 from the ISARIC WHO CCP-UK Study: A Prospective, Multicentre Cohort Study. [Preprint]

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Garrod, Gala, Owen, Sophie ORCID: 0000-0002-0458-2357, Baillie, Kenneth, Baldwin, Lisa, Brown, Lottie, Byrne, Rachel ORCID: 0000-0001-5398-3125, Cubas-Atienzar, Ana ORCID: 0000-0002-9604-124X, Cuevas, Luis ORCID: 0000-0002-6581-0587, Fraser, Alice, Fletcher, Thomas ORCID: 0000-0002-3712-415X et al (show 13 more authors) , Goodwin, Lynsey, Kay, Grant, Kontogianni, Konstantina, Mason, Jenifer, Openshaw, Peter JM, Menzies, Stefanie, Moore, Shona, Semple, Malcolm ORCID: 0000-0001-9700-0418, Taylor, Joseph, Turtle, Lance CW ORCID: 0000-0002-0778-1693, Williams, Christopher, Adams, Emily and ISARIC4C Investigators, (2021) Comparative evaluation of ten lateral flow immunoassays to detect SARS-CoV-2 antibodies. Wellcome Open Research, 6. p. 18.

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Swann, Olivia ORCID: 0000-0001-7386-2849, Pollock, Louisa ORCID: 0000-0002-4240-325X, Holden, Karl, Munro, Alasdair PS ORCID: 0000-0002-4317-0742, Bennett, Aisleen, Williams, Thomas ORCID: 0000-0002-3866-1344, Turtle, Lance ORCID: 0000-0002-0778-1693, Fairfield, Cameron ORCID: 0000-0001-7635-1868, Drake, Thomas, Faust, Saul ORCID: 0000-0003-3410-7642 et al (show 15 more authors) , Sinha, Ian, Roland, Damian ORCID: 0000-0001-9334-5144, Whittaker, Elizabeth, Ladhani, Shamez, Nguyen-Van-Tam, Jonathan, Girvan, Michelle, Donohue, Chloe ORCID: 0000-0001-6379-8214, Donegan, Cara, Spencer, Rebecca, Hardwick, Hayley, Openshaw, Peter JM, Baillie, Kenneth, Harrison, Ewen, Docherty, Annemarie and Semple, Malcolm ORCID: 0000-0001-9700-0418 (2021) Comparison of children and young people admitted with SARS-CoV-2 across the UK in the first and second pandemic waves: prospective multicentre observational cohort study. [Preprint]

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Tedder, Richard, Parker, Eleanor, Sureda-Vives, Macià, Fernandez, Natalia, Randell, Paul, Marchesin, Federica, Katsanovskaja, Ksenia, Harvey, Ruth, Lilley, Alice, Harris, Benjamin HL et al (show 27 more authors) , Zuhair, Mohamed, Fertleman, Michael ORCID: 0000-0003-4023-1156, Ijaz, Samreen, Dicks, Steve, Short, Charlotte-Eve, Quinlan, Rachael, Taylor, Graham, McKay, Paul, Hu, Kai, Rosa, Annachiara, Roustan, Chloe, Zuckerman, Mark, Bouzidi, Kate El, Cooke, Graham, Flower, Barney, Moshe, Maya, Elliott, Paul, Spencer, Alexandra, Lambe, Teresa, Gilbert, Sarah, Kingston, Hugh, Baillie, Kenneth, Openshaw, Peter, Semple, Malcolm ORCID: 0000-0001-9700-0418, Group, ISARIC4C Investigators, Cherepanov, Peter and McLure, Myra (2021) Detection and Quantification of Antibody to SARS-CoV-2 Receptor Binding Domain Provides Enhanced Sensitivity, Specificity and Utility. [Preprint]

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Gupta, Rishi ORCID: 0000-0002-6257-1285, Harrison, Ewen ORCID: 0000-0002-5018-3066, Ho, Antonia ORCID: 0000-0003-1465-3785, Docherty, Annemarie, Knight, Stephen, van Smeden, Maarten ORCID: 0000-0002-5529-1541, Abubakar, Ibrahim ORCID: 0000-0002-0370-1430, Lipman, Marc ORCID: 0000-0001-7501-4448, Quartagno, Matteo ORCID: 0000-0003-4446-0730, Pius, Riinu et al (show 30 more authors) , Buchan, Iain ORCID: 0000-0003-3392-1650, Carson, Gail, Drake, Thomas, Dunning, Jake ORCID: 0000-0002-4035-4562, Fairfield, Cameron, Gamble, Carrol ORCID: 0000-0002-3021-1955, Green, Christopher, Halpin, Sophie, Hardwick, Hayley, Holden, Karl, Horby, Peter, Jackson, Clare, Mclean, Kenneth, Merson, Laura, Nguyen-Van-Tam, Jonathan, Norman, Lisa, Olliaro, Piero, Pritchard, Mark ORCID: 0000-0003-1726-8989, Russell, Clark, Scott-Brown, James, Shaw, Catherine, Sheikh, Aziz, Solomon, Tom ORCID: 0000-0001-7266-6547, Sudlow, Cathie, Swann, Olivia, Turtle, Lance ORCID: 0000-0002-0778-1693, Openshaw, Peter JM, Baillie, Kenneth, Semple, Malcolm ORCID: 0000-0001-9700-0418 and Noursadeghi, Mahdad ORCID: 0000-0002-4774-0853 (2020) Development and validation of the 4C Deterioration model for adults hospitalised with COVID-19. medRxiv.

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Thwaites, Ryan ORCID: 0000-0003-3052-2793, Sevilla Uruchurtu, Ashley Sanchez, Siggins, Matthew, Liew, Felicity ORCID: 0000-0002-8736-9198, Russell, Clark ORCID: 0000-0002-9873-8243, Moore, Shona ORCID: 0000-0001-8610-2806, Carter, Edwin, Abrams, Simon, Short, Charlotte-Eve, Thaventhiran, Thilipan et al (show 14 more authors) , Bergstrom, Emma, Gardener, Zoe, Ascough, Stephanie, Chiu, Christopher, Docherty, Annemarie, Hunt, David, Crow, Yanick, Solomon, Tom, Taylor, Graham, Turtle, Lance, Harrison, Ewen ORCID: 0000-0002-5018-3066, Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth and Openshaw, Peter JM (2020) Elevated antiviral, myeloid and endothelial inflammatory markers in severe COVID-19. MedRxiv.

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Harrison, Ewen, Docherty, Annemarie, Barr, Benjamin ORCID: 0000-0002-4208-9475, Buchan, Iain ORCID: 0000-0003-3392-1650, Carson, Gail, Drake, Tom, Dunning, Jake, Fairfield, Cameron, Gamble, Carrol ORCID: 0000-0002-3021-1955, Green, Christopher et al (show 35 more authors) , Griffiths, Chris, Halpin, Sophie ORCID: 0000-0003-1310-2594, Hardwick, Hayley, Ho, Antonia, Holden, Karl, Hollinghurst, Joe, Horby, Peter, Jackson, Clare, Katikireddi, Srinivasa Vittal ORCID: 0000-0001-6593-9092, Knight, Stephen, Lyons, Ronan, MacMahon, James, Mclean, Kenneth, Merson, Laura, Murphy, Derek, Nguyen-Van-Tam, Jonathan, Norman, Lisa, Olliaro, Piero, Pareek, Manish ORCID: 0000-0003-1521-9964, Piroddi, Roberta ORCID: 0000-0002-1139-2949, Pius, Riinu, Read, Jonathan, Russell, Clark, Sattar, Naveed, Shaw, Catherine, Sheikh, Aziz, Sinha, Ian, Swann, Olivia, Taylor-Robinson, David ORCID: 0000-0002-5828-7724, Thomas, Daniel, Turtle, Lance ORCID: 0000-0002-0778-1693, Openshaw, Peter JM, Baillie, Kenneth, Semple, Malcolm ORCID: 0000-0001-9700-0418 and Investigators, ISARIC4C ORCID: 0000-0002-3567-7025 (2020) Ethnicity and Outcomes from COVID-19: The ISARIC CCP-UK Prospective Observational Cohort Study of Hospitalised Patients. SSRN Electronic Journal.

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McNaughton, Anna, Paton, Robert, Edmans, Matthew, Youngs, Jonathan, Wellens, Judith, Phalora, Prabhjeet, Fyfe, Alex, Belij-Rammerstorfer, Sandra, Bolton, Jai, Ball, Jonathan et al (show 47 more authors) , Carnell, George ORCID: 0000-0001-8875-0989, Dejnirattisai, Wanwisa, Dold, Christina, Eyre, David ORCID: 0000-0001-5095-6367, Hopkins, Philip, Howarth, Alison, Kooblall, Kreepa, Klim, Hannah, Leaver, Susannah, Lee, Lian, Lopez-Camacho, Cesar, Lumley, Sheila, Macallan, Derek, Mentzer, Alexander, Provine, Nicholas, Ratcliff, Jeremy, Slon-Campos, Jose, Skelly, Donal ORCID: 0000-0002-2426-3097, Stolle, Lucas, Supasa, Piyada, Temperton, Nigel ORCID: 0000-0002-7978-3815, Walker, Chris, Wang, Beibei, Wyncoll, Duncan, OPTIC consortium, , SNBTS consortium, , Simmonds, Peter, Lambe, Teresa, Baillie, Kenneth, Semple, Malcolm ORCID: 0000-0001-9700-0418, Openshaw, Peter, Investigators, ISARIC4C, Obolski, Uri, Turner, Marc, Carroll, Miles, Mongkolspaya, Juthathip, Screaton, Gavin ORCID: 0000-0002-3549-4309, Kennedy, Stephen, Jarvis, Lisa, Barnes, Eleanor, Dunachie, Susanna, Lourenço, José, Matthews, Philippa, Bicanic, Tihana, Klenerman, Paul, Gupta, Sunetra and Thompson, Craig (2021) Fatal COVID-19 Outcomes are Associated with an Antibody Response Targeting Epitopes Shared with Endemic Coronaviruses. [Preprint]

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McNaughton, Anna, Paton, Robert, Edmans, Matthew, Youngs, Jonathan, Wellens, Judith, Phalora, Prabhjeet, Fyfe, Alex, Belij-Rammerstorfer, Sandra, Bolton, Jai, Ball, Jonathan et al (show 47 more authors) , Carnell, George ORCID: 0000-0001-8875-0989, Dejnirattisai, Wanwisa, Dold, Christina, Eyre, David ORCID: 0000-0001-5095-6367, Hopkins, Philip, Howarth, Alison, Kooblall, Kreepa, Klim, Hannah, Leaver, Susannah, Lee, Lian, López-Camacho, César, Lumley, Sheila, Macallan, Derek, Mentzer, Alexander, Provine, Nicholas, Ratcliff, Jeremy, Slon-Compos, Jose, Skelly, Donal, Stolle, Lucas, Supasa, Piyada, Temperton, Nigel ORCID: 0000-0002-7978-3815, Walker, Chris, Wang, Beibei, Wyncoll, Duncan, Simmonds, Peter, Lambe, Teresa, Baillie, Kenneth, Semple, Malcolm ORCID: 0000-0001-9700-0418, Openshaw, Peter IM, Obolski, Uri, Turner, Marc, Carroll, Miles, Mongkolsapaya, Juthathip, Screaton, Gavin, Kennedy, Stephen, Jarvis, Lisa, Barnes, Eleanor ORCID: 0000-0002-0860-0831, Dunachie, Susanna ORCID: 0000-0001-5665-6293, Lourenço, José, Matthews, Philippa, Bicanic, Tihana, Klenerman, Paul ORCID: 0000-0003-4307-9161, Gupta, Sunetra, Thompson, Craig ORCID: 0000-0001-9248-9365, OPTIC consortium, , SNBTS consortium, and ISARIC4C Investigators, (2021) Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses. [Preprint]

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Pairo-Castineira, Erola ORCID: 0000-0002-2423-3090, Clohisey, Sara, Klaric, Lucija ORCID: 0000-0003-3105-8929, Bretherick, Andrew ORCID: 0000-0001-9258-3140, Rawlik, Konrad, Parkinson, Nick, Pasko, Dorota, Walker, Susan, Richmond, Anne, Fourman, Max Head et al (show 50 more authors) , Russell, Clark, Law, Andrew, Furniss, James, Gountouna, Elvina, Wrobel, Nicola, Moutsianas, Loukas, Wang, Bo, Meynert, Alison, Yang, Zhijian, Zhai, Ranran, Zheng, Chenqing, Griffiths, Fiona, Oosthuyzen, Wilna, Grimes, Graeme, Shih, Barbara ORCID: 0000-0001-8552-5604, Keating, Sean, Zechner, Marie, Haley, Chris, Porteous, David, Hayward, Caroline, Knight, Julian ORCID: 0000-0002-0377-5536, Summers, Charlotte, Shankar-Hari, Manu, Klenerman, Paul ORCID: 0000-0003-4307-9161, Turtle, Lance ORCID: 0000-0002-0778-1693, Ho, Antonia, Hinds, Charles, Horby, Peter, Nichol, Alistair, Maslove, David, Ling, Lowell, McAuley, Danny, Montgomery, Hugh, Walsh, Timothy, Shen, Xia, Rowan, Kathy, Fawkes, Angie, Murphy, Lee, Ponting, Chris, Tenesa, Albert, Caulfield, Mark, Scott, Richard, Openshaw, Peter JM ORCID: 0000-0001-9700-0418, Semple, Malcolm ORCID: 0000-0001-9700-0418, Vitart, Veronique, Wilson, James ORCID: 0000-0001-5258-793X, Baillie, Kenneth, The GenOMICC Investigators, , The ISARIC-4C Investigators, and The Covid-19 Human Genetics Initiative, (2020) Genetic mechanisms of critical illness in Covid-19. medRxiv.

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ISARIC Clinical Characterisation Group, , Baillie, Kenneth ORCID: 0000-0001-5258-793X, Baruch, Joaquin ORCID: 0000-0002-0806-3183, Beane, Abigail ORCID: 0000-0001-7046-1580, Blumberg, Lucille, Bozza, Fernando Augusto ORCID: 0000-0003-4878-0256, Broadley, Tessa ORCID: 0000-0002-8288-449X, Broadley, Tessa ORCID: 0000-0002-5555-0777, Burrell, Aidan ORCID: 0000-0002-7332-0692, Carson, Gail ORCID: 0000-0001-8439-9933 et al (show 48 more authors) , Citarella, Barbara Wanjiru ORCID: 0000-0001-8968-0708, Dunning, Jake ORCID: 0000-0002-0195-2463, Elotmani, Loubna, Barrio, Noelia Garcia ORCID: 0000-0003-2399-9657, Barrio, Noelia Garcia ORCID: 0000-0002-4035-4562, Goffard, Jean-Christophe, Goncalves, Bronner ORCID: 0000-0003-3421-6435, Hall, Matthew ORCID: 0000-0002-5018-3066, Hall, Matthew ORCID: 0000-0002-2671-3864, Hashmi, Madiha, Horby, Peter, Jassat, Waasila ORCID: 0000-0003-4279-3056, Kartsonaki, Christiana, Vijayaraghavan, Bharath Kumar Tirupakuzhi, Vecham, Pavan Kumar, Laouenan, Cedric ORCID: 0000-0001-7134-3746, Laouenan, Cedric ORCID: 0000-0001-9700-0418, Lissauer, Samantha ORCID: 0000-0002-3681-6314, Martin-Loeches, Ignacio ORCID: 0000-0003-1726-8989, Mentre, France ORCID: 0000-0002-7045-1275, Morton, Ben ORCID: 0000-0002-6164-2854, Munblit, Daniel, Nekliudov, Nikita, Nichol, Alistair, Ong, David SY, Panda, Prasan Kumar, Jimenez, Miguel Pedrera, Petrovic, Michelle, Ramakrishnan, Nagarajan, Ramos, Grazielle Viana, Roger, Claire, Rojek, Amanda, Sandulescu, Oana, Semple, Malcolm ORCID: 0000-0001-9700-0418, Sharma, Pratima, Shrapnel, Sally, Sigfrid, Louise ORCID: 0000-0003-2764-1177, Heng, Benedict Sim Lim, Singh, Budha Charan, Somers, Emily, Streinu-Cercel, Anca, Taccone, Fabio, Wei, Jia, Wils, Evert-Jan ORCID: 0000-0002-2868-0920, Wong, Xin Ci, Young, Kyle ORCID: 0000-0001-6911-8216, Olliaro, Piero and Merson, Laura (2020) ISARIC COVID-19 Clinical Data Report issued: 27 March 2022. MedRxiv.

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Dong, Xiaofeng, Penrice-Randal, Rebekah ORCID: 0000-0002-0653-2097, Goldswain, Hannah, Prince, Tessa, Randle, Nadine, Salguero, Javier, Tree, Julia, Vamos, Ecaterina, Nelson, Charlotte, Stewart, James ORCID: 0000-0002-8928-2037 et al (show 10 more authors) , Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth, Openshaw, Peter, Turtle, Lance, Matthews, David, Carroll, Miles, Darby, Alistair ORCID: 0000-0002-3786-6209, Hiscox, Julian ORCID: 0000-0002-6582-0275, ISARIC4C Investigators, and COVID-19 Genomics UK (COG-UK) Consortium, (2021) Identification and quantification of SARS-CoV-2 leader subgenomic mRNA gene junctions in nasopharyngeal samples shows phasic transcription in animal models of COVID-19 and dysregulation at later time points that can also be identified in humans. bioRxiv.

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Grundmann, Alexander, Wu, Chieh-Hsi, Hardwick, Marc, Baillie, Kenneth, Openshaw, Peter, Semple, Malcolm ORCID: 0000-0001-9700-0418, Böhning, Dankmar, Pett, Sarah, Michael, Benedict ORCID: 0000-0002-8693-8926, Thomas, Rhys et al (show 1 more authors) and Galea, Ian (2022) Impact of Dexamethasone and Remdesivir on Neurological Complications during COVID-19. SSRN Electronic Journal.

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Leclerc, Quentin ORCID: 0000-0003-4761-001X, Fuller, Naomi ORCID: 0000-0003-4026-5591, Keogh, Ruth, Diaz-Ordaz, Karla ORCID: 0000-0003-3155-1561, Sekula, Richard, Semple, Malcolm ORCID: 0000-0001-9700-0418, Atkins, Katherine ORCID: 0000-0001-5250-0558, Procter, Simon ORCID: 0000-0002-0380-1503, Knight, Gwenan ORCID: 0000-0002-7263-9896, ISARIC4C Investigators, et al (show 1 more authors) and CMMID COVID-19 Working Group, (2021) Importance of patient bed pathways and length of stay differences in predicting COVID-19 bed occupancy in England. medRxiv.

Naylor, Conor ORCID: 0000-0002-9533-5027 (2021) The Liverpool Baby Breathing Study: A Cross-Sectional and Longitudinal Assessment of Respiratory Symptoms in the First Five Years of Life, and Their Impact on Quality of Life. Master of Philosophy thesis, University of Liverpool.

Green, Mark ORCID: 0000-0002-0942-6628 and Semple, Malcolm ORCID: 0000-0001-9700-0418 (2021) Occupational inequalities in the prevalence of COVID-19: A longitudinal observational study of England, August 2020 to January 2021. [Preprint]

Green, Mark ORCID: 0000-0002-0942-6628 and Semple, Malcolm ORCID: 0000-0001-9700-0418 (2023) Occupational inequalities in the prevalence of COVID-19: A longitudinal observational study of England, August 2020 to January 2021. PLoS One, 18 (4). e0283119-.

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Drake, Thomas, Docherty, Annemarie, Harrison, Ewen ORCID: 0000-0002-5018-3066, Quint, Jennifer, Adamali, Huzaifa ORCID: 0000-0002-8230-175X, Adamali, Huzaifa ORCID: 0000-0003-0149-4869, Agnew, Sarah, Babu, Suresh, Barber, Christopher, Barratt, Shaney et al (show 63 more authors) , Bendstrup, Elisabeth ORCID: 0000-0002-4238-6963, Bendstrup, Elisabeth ORCID: 0000-0003-3067-7349, Bianchi, Stephen, Villegas, Diego Castillo, Chaudhuri, Nazia ORCID: 0000-0003-3325-6996, Chua, Felix ORCID: 0000-0001-7845-0173, Coker, Robina, Chang, William, Crawshaw, Anjali, Crowley, Louise, Dosanjh, Davinder, Fiddler, Christine, Forrest, Ian, George, Peter, Gibbons, Michael, Groom, Katherine, Haney, Sarah, Hart, Simon, Heiden, Emily, Henry, Michael, Ho, Ling-Pei, Hoyles, Rachel, Hutchinson, John, Hurley, Killian, Jones, Mark, Jones, Steve, Kokosi, Maria, Kreuter, Michael, MacKay, Laura, Mahendran, Siva, Margaritopoulos, George, Molina-Molina, Maria, Molyneaux, Philip, O’Brien, Aiden, O’Reilly, Katherine, Packham, Alice, Parfrey, Helen, Poletti, Venerino, Porter, Joanna ORCID: 0000-0002-7307-169X, Renzoni, Elisabetta, Rivera-Ortega, Pilar, Russell, Anne-Marie, Saini, Gauri, Spencer, Lisa, Stella, Giulia, Stone, Helen, Sturney, Sharon, Thickett, David, Thillai, Muhunthan, Wallis, Tim, Ward, Katie, Wells, Athol, West, Alex, Wickremasinghe, Melissa, Woodhead, Felix, Hearson, Glenn ORCID: 0000-0002-5815-3996, Howard, Lucy, Baillie, Kenneth, Openshaw, Peter JM, Semple, Malcolm ORCID: 0000-0001-9700-0418, Stewart, Iain, Jenkins, Gisli and ISARIC4C Investigators, ORCID: 0000-0002-7929-2119 (2020) Outcome of hospitalisation for COVID-19 in patients with Interstitial Lung Disease: An international multicentre study. medrxiv.

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Geretti, Anna Maria, Stockdale, Alexander, Kelly, Sophie, Cevik, Muge, Collins, Simon ORCID: 0000-0002-3537-2432, Waters, Laura, Villa, Giovanni, Docherty, Annemarie, Harrison, Ewen, Turtle, Lance ORCID: 0000-0002-0778-1693 et al (show 5 more authors) , Openshaw, Peter, Baillie, Kenneth, Sabin, Caroline, Semple, Malcolm ORCID: 0000-0001-9700-0418 and Group, CHASE Study (2020) Outcomes of COVID-19 Related Hospitalisation Among People with HIV in the ISARIC WHO Clinical Characterisation Protocol UK Protocol: Prospective Observational Study. SSRN Electronic Journal.

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Stewart, Alexander, Sinclair, Emma, Ng, Joseph, O’Hare, Joselli Silvia, Page, Audrey, Serangeli, Ilaria, Margreitter, Christian, Kasar, Nora, Longman, Katherine, Frampas, Cecile et al (show 12 more authors) , Costa, Catia, Lewis, Holly, Wu, Bryan, Kipling, David, Openshaw, Peter, Chu, Christopher, Baillie, Kenneth, Scott, Janet, Semple, Malcolm ORCID: 0000-0001-9700-0418, Bailey, Melanie, Fraternali, Franca and Dunn-Walters, Deborah (2021) Pandemic, epidemic, endemic: B cell repertoire analysis reveals unique anti-viral responses to SARS-CoV-2, Ebola and Respiratory Syncytial Virus. [Preprint]

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PHOSP-COVID Collaborative Group, ORCID: 0000-0002-1667-868X, Evans, Rachael Andrea, McAuley, Hamish ORCID: 0000-0001-8997-0764, Harrison, Ewen, Shikotra, Aarti, Singapuri, Amisha, Sereno, Marco, Elneima, Omer, Docherty, Annemarie ORCID: 0000-0003-2707-2779, Lone, Nazir ORCID: 0000-0002-1503-5535 et al (show 38 more authors) , Leavy, Olivia, Daines, Luke, Baillie, Kenneth, Brown, Jeremy, Chalder, Trudie, De Soyza, Anthony, Diar Bakerly, Nawar, Easom, Nicholas, Geddes, John, Greening, Neil ORCID: 0000-0003-0453-7529, Hart, Nick ORCID: 0000-0002-6863-585X, Heaney, Liam, Heller, Simon ORCID: 0000-0002-2425-9565, Howard, Luke, Jacob, Joseph, Jenkins, Gisli, Jolley, Caroline, Kerr, Steven, Kon, Onn, Lewis, Keir, Lord, Janet, McCann, Gerry, Neubauer, Stefan, Openshaw, Peter JM, Pfeffer, Paul ORCID: 0000-0003-0369-2885, Rowland, Matthew, Semple, Malcolm ORCID: 0000-0001-9700-0418, Singh, Sally, Sheikh, Aziz, Thomas, David, Toshner, Mark, Chalmers, James, Ho, Ling-Pei ORCID: 0000-0001-8319-301X, Horsley, Alex, Marks, Michael, Poinasamy, Krisnah, Wain, Louise and Brightling, Christopher (2021) Physical, cognitive and mental health impacts of COVID-19 following hospitalisation – a multi-centre prospective cohort study. [Preprint]

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Pazukhina, Ekaterina, Andreeva, Margarita, Spiridonova, Ekaterina, Bobkova, Polina, Shikhaleva, Anastasia, El-Taravi, Yasmin, Rumyantsev, Mikhail, Gamirova, Aysylu, Bairashevskaia, Anastasiia, Petrova, Polina et al (show 41 more authors) , Baimukhambetova, Dina, Pikuza, Maria, Abdeeva, Elina, Filippova, Yulia, Deunezhewa, Salima, Nekliudov, Nikita, Bugaeva, Polina, Bulanov, Nikolay, Avdeev, Sergey, Kapustina, Valentina, Guekht, Alla, DunnGalvin, Audrey, Comberiati, Pasquale, Peroni, Diego, Apfelbacher, Christian, Genuneit, Jon, Reyes, Luis Felipe, Brackel, Caroline LH, Fomin, Victor, Svistunov, Andrey, Timashev, Peter, Mazankova, Lyudmila, Miroshina, Alexandra, Samitova, Elmira, Borzakova, Svetlana, Bondarenko, Elena, Korsunskiy, Anatoliy, Carson, Gail, Sigfrid, Louise, Scott, Janet, Greenhawt, Matthew, Buonsenso, Danilo, Semple, Malcolm ORCID: 0000-0001-9700-0418, Warner, John, Olliaro, Piero, Needham, Dale, Glybochko, Petr, Butnaru, Denis, Osmanov, Ismail, Munblit, Daniel and Team, Sechenov StopCOVID Research (2022) Prevalence and Risk Factors of Post-COVID-19 Condition in Adults and Children at 6 and 12 Months After Hospital Discharge: A Prospective, Cohort Study in Moscow (Stop COVID). [Preprint]

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Pazukhina, Ekaterina, Andreeva, Margarita, Spiridonova, Ekaterina, Bobkova, Polina, Shikhaleva, Anastasia, El-Taravi, Yasmin, Rumyantsev, Mikhail, Gamirova, Aysylu, Bairashevskaia, Anastasiia, Petrova, Polina et al (show 41 more authors) , Baimukhambetova, Dina, Pikuza, Maria, Abdeeva, Elina, Filippova, Yulia, Deunezhewa, Salima, Nekliudov, Nikita, Bugaeva, Polina, Bulanov, Nikolay, Avdeev, Sergey, Kapustina, Valentina, Guekht, Alla, DunnGalvin, Audrey, Comberiati, Pasquale, Peroni, Diego G, Apfelbacher, Christian, Genuneit, Jon, Reyes, Luis Felipe, Brackel, Caroline LH, Fomin, Victor, Svistunov, Andrey A, Timashev, Peter, Mazankova, Lyudmila, Miroshina, Alexandra, Samitova, Elmira, Borzakova, Svetlana, Bondarenko, Elena, Korsunskiy, Anatoliy A, Carson, Gail, Sigfrid, Louise, Scott, Janet T, Greenhawt, Matthew, Buonsenso, Danilo, Semple, Malcolm ORCID: 0000-0001-9700-0418, Warner, John O, Olliaro, Piero L, Needham, Dale M, Glybochko, Petr, Butnaru, Denis, Osmanov, Ismail M, Munblit, Daniel and Team, Sechenov StopCOVID Research (2023) Prevalence and Risk Factors of Post-COVID-19 Condition in Adults and Children at 6 and 12 Months After Hospital Discharge: A Prospective, Cohort Study in Moscow (Stop COVID). SSRN Electronic Journal.

Grundmann, Alexander, Hardwick, Marc, Wu, Chieh-Hsi, Semple, Malcolm ORCID: 0000-0001-9700-0418, Böhning, Dankmar, Pett, Sarah, Michael, Benedict Daniel ORCID: 0000-0002-8693-8926, Thomas, Rhys and Galea, Ian (2022) Prevention of Neurological Complications During COVID-19: Protocol for a Retrospective Analysis of the ISARIC4C National Cohort. [Preprint]

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Dong, Xiaofeng, Goldswain, Hannah, Penrice-Randal, Rebekah, Shawli, Ghada, Prince, Tessa, Williamson, Maia Kavanagh, Randle, Nadine, Jones, Benjamin, Salguero, Francisco, Tree, Julia et al (show 17 more authors) , Hall, Yper, Hartley, Catherine, Erdmann, Maximilian, Bazire, James, Jearanaiwitayakul, Tuksin, Semple, Malcolm ORCID: 0000-0001-9700-0418, Openshaw, Peter, Baille, Kenneth, Emmett, Stevan, Digard, Paul, Matthews, David, Turtle, Lance, Darby, Alistair, Davidson, Andrew, Carroll, Miles, Hiscox, Julian and ISARIC4C investigators, (2021) Rapid selection of P323L in the SARS-CoV-2 polymerase (NSP12) in humans and non-human primate models and confers a large plaque phenotype. [Preprint]

Pauley, Ellen ORCID: 0000-0001-6994-9722, Drake, Thomas, Griffith, David ORCID: 0000-0001-9500-241X, Lone, Nazir ORCID: 0000-0003-2707-2779, Harrison, Ewen, Baillie, Kenneth ORCID: 0000-0001-5258-793X, Scott, Janet, Walsh, Timothy, Semple, Malcolm ORCID: 0000-0001-9700-0418 and Docherty, Annemarie (2021) Recovery from Covid-19 critical illness: a secondary analysis of the ISARIC4C CCP-UK cohort study and the RECOVER trial. [Preprint]

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Osmanov, Ismail ORCID: 0000-0003-3181-9601, Spiridonova, Ekaterina, Bobkova, Polina ORCID: 0000-0002-6604-7173, Gamirova, Aysylu, Shikhaleva, Anastasia, Andreeva, Margarita, Blyuss, Oleg, El-Taravi, Yasmin, DunnGalvin, Audrey ORCID: 0000-0002-1540-3959, Comberiati, Pasquale et al (show 29 more authors) , Peroni, Diego, Apfelbacher, Christian, Genuneit, Jon, Mazankova, Lyudmila, Miroshina, Alexandra, Chistyakova, Evgeniya, Samitova, Elmira, Borzakova, Svetlana, Bondarenko, Elena, Korsunskiy, Anatoliy, Konova, Irina, Hanson, Sarah Wulf, Carson, Gail, Sigfrid, Louise ORCID: 0000-0003-2764-1177, Scott, Janet, Greenhawt, Matthew, Whittaker, Elizabeth, Garralda, Elena, Swann, Olivia, Buonsenso, Danilo, Nicholls, Dasha, Simpson, Frances, Jones, Christina, Semple, Malcolm ORCID: 0000-0001-9700-0418, Warner, John, Vos, Theo, Olliaro, Piero, Munblit, Daniel and Sechenov StopCOVID Research Team, (2021) Risk factors for long covid in previously hospitalised children using the ISARIC Global follow-up protocol: A prospective cohort study. [Preprint]

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Munblit, Daniel ORCID: 0000-0001-9652-6856, Bobkova, Polina ORCID: 0000-0002-6604-7173, Spiridonova, Ekaterina, Shikhaleva, Anastasia, Gamirova, Aysylu, Blyuss, Oleg, Nekliudov, Nikita ORCID: 0000-0002-4291-5052, Bugaeva, Polina ORCID: 0000-0001-8745-2568, Andreeva, Margarita, DunnGalvin, Audrey ORCID: 0000-0002-1540-3959 et al (show 22 more authors) , Comberiati, Pasquale, Apfelbacher, Christian, Genuneit, Jon, Avdeev, Sergey, Kapustina, Valentina ORCID: 0000-0001-6512-1629, Guekht, Alla, Fomin, Victor, Svistunov, Andrey, Timashev, Peter, Drake, Thomas, Hanson, Sarah Wulf, Merson, Laura, Horby, Peter, Sigfrid, Louise ORCID: 0000-0003-2764-1177, Scott, Janet, Semple, Malcolm ORCID: 0000-0001-9700-0418, Warner, John, Vos, Theo, Olliaro, Piero, Glybochko, Petr, Butnaru, Denis and Sechenov StopCOVID Research Team, (2021) Risk factors for long-term consequences of COVID-19 in hospitalised adults in Moscow using the ISARIC Global follow-up protocol: StopCOVID cohort study. [Preprint]

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Shingleton, Joseph, Burton, Lucy, Williams, Hannah, Finnie, Thomas, Bennett, Emma, Birrell, Paul, Kenny, Simon, Watson-Koszel, Tiffany, Viner, Russell, Arditi, Moshe et al (show 20 more authors) , DeAngelis, Daniela, Gent, Nick, Amin-Chowdhury, Zahin, Avis, Jacob, Bharucha, Tara, Davis, Peter, Dwarakanathan, Buvana, Jyothish, Deepthi, Lynn, Richard, Oligbu, Godwin, Pain, Clare, Poh, John, Ramanan, Athimalaipet, Ramsay, Mary, Semple, Malcolm ORCID: 0000-0001-9700-0418, Swann, Olivia, Whittaker, Elizabeth, Williams, Christopher, Wood, Rachael ORCID: 0000-0003-4453-623X and Ladhani, Shamez (2022) Risk of Paediatric Multisystem Inflammatory Syndrome (PIMS-TS) During the SARS-CoV-2 <i>Alpha</i> and <i>Delta</i> Variant Waves: National Observational Study, 2020-21, England. [Preprint]

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Knight, Stephen, Ho, Antonia ORCID: 0000-0003-1465-3785, Pius, Riinu, Buchan, Iain ORCID: 0000-0003-3392-1650, Carson, Gail ORCID: 0000-0001-8439-9933, Drake, Thomas, Dunning, Jake, Fairfield, Cameron ORCID: 0000-0001-7635-1868, Gamble, Carrol ORCID: 0000-0002-3021-1955, Green, Christopher et al (show 25 more authors) , Gupta, Rishi ORCID: 0000-0002-6257-1285, Halpin, Sophie, Hardwick, Hayley, Holden, Karl, Horby, Peter, Jackson, Clare, Mclean, Kenneth, Merson, Laura, Nguyen-Van-Tam, Jonathan, Norman, Lisa, Noursadeghi, Mahdad ORCID: 0000-0002-4774-0853, Olliaro, Piero, Pritchard, Mark ORCID: 0000-0003-1726-8989, Russell, Clark, Shaw, Catherine, Sheikh, Aziz, Solomon, Tom ORCID: 0000-0001-7266-6547, Sudlow, Cathie, Swann, Olivia, Turtle, Lance CW ORCID: 0000-0002-0778-1693, Openshaw, Peter JM, Baillie, Kenneth, Semple, Malcolm ORCID: 0000-0001-9700-0418, Docherty, Annemarie and Harrison, Ewen ORCID: 0000-0002-5018-3066 (2020) Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score. MedRxiv.

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Andersson, Monique ORCID: 0000-0003-0619-1074, Arancibia-Carcamo, Carolina, Auckland, Kathryn, Baillie, Kenneth, Barnes, Eleanor, Beneke, Tom ORCID: 0000-0001-9117-2649, Bibi, Sagida, Brooks, Tim, Carroll, Miles, Crook, Derrick ORCID: 0000-0002-0590-2850 et al (show 39 more authors) , Dingle, Kate ORCID: 0000-0002-2303-5957, Dold, Christina, Downs, Louise ORCID: 0000-0002-6088-4704, Dunn, Laura, Eyre, David ORCID: 0000-0001-5095-6367, Gilbert Jaramillo, Javier, Harvala, Heli, Hoosdally, Sarah, Ijaz, Samreen, James, Tim, James, William, Jeffery, Katie ORCID: 0000-0002-6506-2689, Justice, Anita, Klenerman, Paul, Knight, Julian, Knight, Michael, Liu, Xu ORCID: 0000-0003-1254-7970, Lumley, Sheila, Matthews, Philippa ORCID: 0000-0002-4036-4269, McNaughton, Anna ORCID: 0000-0002-7436-8727, Mentzer, Alexander ORCID: 0000-0002-4502-2209, Mongkolsapaya, Juthathip, Oakley, Sarah, Oliveira, Marta, Peto, Timothy, Ploeg, Rutger ORCID: 0000-0001-7801-665X, Ratcliff, Jeremy ORCID: 0000-0001-6522-138X, Robbins, Melanie, Roberts, David, Rudkin, Justine ORCID: 0000-0002-3044-0459, Russell, Rebecca, Screaton, Gavin, Semple, Malcolm ORCID: 0000-0001-9700-0418, Skelly, Donal ORCID: 0000-0002-2426-3097, Simmonds, Peter ORCID: 0000-0002-7964-4700, Stoesser, Nicole, Turtle, Lance ORCID: 0000-0002-0778-1693, Wareing, Susan and Zambon, Maria ORCID: 0000-0002-8897-7881 (2020) SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus. Wellcome Open Research, 5. p. 181.

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Andersson, Monique, Arancibia-Carcamo, Carolina, Auckland, Kathryn, Baillie, Kenneth, Barnes, Eleanor ORCID: 0000-0002-0860-0831, Beneke, Tom, Bibi, Sagida, Brooks, Tim, Carroll, Miles, Crook, Derrick et al (show 39 more authors) , Dingle, Kate, Dold, Christina, Downs, Louise ORCID: 0000-0002-6088-4704, Dunn, Laura, Eyre, David, Gilbert Jaramillo, Javier, Harvala, Heli, Hoosdally, Sarah, Ijaz, Samreen, James, Tim, James, William, Jeffery, Katie, Justice, Anita, Klenerman, Paul, Knight, Julian, Knight, Michael, Liu, Xu, Lumley, Sheila ORCID: 0000-0001-6825-9324, Matthews, Philippa ORCID: 0000-0002-4036-4269, McNaughton, Anna ORCID: 0000-0002-7436-8727, Mentzer, Alexander ORCID: 0000-0002-4502-2209, Mongkolsapaya, Juthathip, Oakley, Sarah, Oliveira, Marta, Peto, Timothy, Ploeg, Rutger ORCID: 0000-0001-7801-665X, Ratcliff, Jeremy, Robbins, Melanie, Roberts, David, Rudkin, Justine ORCID: 0000-0002-3044-0459, Russell, Rebecca, Screaton, Gavin, Semple, Malcolm ORCID: 0000-0001-9700-0418, Skelly, Donal ORCID: 0000-0002-2426-3097, Simmonds, Peter, Stoesser, Nicole, Turtle, Lance ORCID: 0000-0002-0778-1693, Wareing, Sue and Zambon, Maria (2020) SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus. Wellcome Open Res, 5. 181-.

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Andersson, Monique, Arancibia-Cárcamo, Carolina, Auckland, Kathryn, Baillie, Kenneth, Barnes, Eleanor ORCID: 0000-0002-0860-0831, Beneke, Tom, Bibi, Sagida ORCID: 0000-0002-0855-2737, Carroll, Miles, Crook, Derrick ORCID: 0000-0002-0590-2850, Dingle, Kate et al (show 37 more authors) , Dold, Christina, Downs, Louise, Dunn, Laura, Eyre, David ORCID: 0000-0001-5095-6367, Jaramillo, Javier Gilbert, Harvala, Heli, Hoosdally, Sarah, Ijaz, Samreen, James, Tim, James, William, Jeffery, Katie, Justice, Anita, Klenerman, Paul ORCID: 0000-0003-4307-9161, Knight, Julian, Knight, Michael, Liu, Xu, Lumley, Sheila, Matthews, Philippa, McNaughton, Anna, Mentzer, Alexander ORCID: 0000-0002-4502-2209, Mongkolsapaya, Juthathip, Oakley, Sarah, Oliveira, Marta, Peto, Timothy, Ploeg, Rutger, Ratcliff, Jeremy, Roberts, David, Rudkin, Justine ORCID: 0000-0002-3044-0459, Russell, Rebecca, Screaton, Gavin ORCID: 0000-0002-3549-4309, Semple, Malcolm ORCID: 0000-0001-9700-0418, Skelly, Donal, Simmonds, Peter, Stoesser, Nicole ORCID: 0000-0002-4508-7969, Turtle, Lance, Wareing, Sue and Zambon, Maria (2020) SARS-CoV-2 RNA detected in blood samples from patients with COVID-19 is not associated with infectious virus. MedRxiv.

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Killingley, Ben, Mann, Alex, Kalinova, Mariya ORCID: 0000-0002-3744-4604, Boyers, Alison, Goonawardane, Niluka ORCID: 0000-0003-2906-5513, Zhou, Jie, Lindsell, Kate, Hare, Samanjit, Brown, Jonathan ORCID: 0000-0001-6849-3962, Frise, Rebecca et al (show 21 more authors) , Smith, Emma, Hopkins, Claire, Noulin, Nicolas, Londt, Brandon, Wilkinson, Tom, Harden, Stephen, McShane, Helen, Baillet, Mark, Gilbert, Anthony, Jacobs, Michael, Charman, Christine, Mande, Priya, Nguyen-Van-Tam, Jonathan, Semple, Malcolm ORCID: 0000-0001-9700-0418, Read, Robert, Ferguson, Neil, Openshaw, Peter, Rapeport, Garth, Barclay, Wendy, Catchpole, Andrew and Chiu, Christopher ORCID: 0000-0003-0914-920X (2022) Safety, tolerability and viral kinetics during SARS-CoV-2 human challenge. ResearchSquare.

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Prince, Tessa, Dong, Xiaofeng, Penrice-Randal, Rebekah, Randle, Nadine, Hartley, Catherine, Goldswain, Hannah, Jones, Benjamin ORCID: 0000-0002-5162-9357, Semple, Malcolm ORCID: 0000-0001-9700-0418, Baillie, Kenneth ORCID: 0000-0001-5258-793X, Openshaw, Peter ORCID: 0000-0002-7220-2555 et al (show 10 more authors) , Turtle, Lance, Hughes, Grant ORCID: 0000-0002-7567-7185, Anderson, Enyia, Patterson, Edward, Druce, Julian, Screaton, Gavin, Carroll, Miles, Stewart, James, Hiscox, Julian and ISARIC4C Investigators, (2021) Sequence analysis of SARS-CoV-2 in nasopharyngeal samples from patients with COVID-19 illustrates population variation and diverse phenotypes, placing the in vitro growth properties of B.1.1.7 and B.1.351 lineage viruses in context. [Preprint]

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Wild, Jim M, Porter, Joanna C, Molyneaux, Philip L, George, Peter M, Stewart, Iain, Allen, Richard James, Aul, Raminder, Baillie, John Kenneth, Barratt, Shaney L, Beirne, Paul et al (show 44 more authors) , Bianchi, Stephen M, Blaikley, John F, Brooke, Jonathan, Chaudhuri, Nazia, Collier, Guilhem, Denneny, Emma K, Docherty, Annemarie, Fabbri, Laura, Gibbons, Michael A, Gleeson, Fergus V, Gooptu, Bibek, Hall, Ian P, Hanley, Neil A, Heightman, Melissa, Hillman, Toby E, Johnson, Simon R, Jones, Mark G, Khan, Fasihul, Lawson, Rod, Mehta, Puja, Mitchell, Jane A, Platé, Manuela, Poinasamy, Krisnah, Quint, Jennifer K, Rivera-Ortega, Pilar, Semple, Malcolm ORCID: 0000-0001-9700-0418, Simpson, A John, Smith, DJF, Spears, Mark, Spencer, LIsa G, Stanel, Stefan C, Thickett, David R, Thompson, AA Roger, Walsh, Simon LF, Weatherley, Nicholas D, Weeks, Mark Everard, Wootton, Dan G ORCID: 0000-0002-5903-3881, Brightling, Chris E, Chambers, Rachel C, Ho, Ling-Pei, Jacob, Joseph, Piper Hanley, Karen, Wain, Louise V and Jenkins, R Gisli (2021) Understanding the burden of interstitial lung disease post-COVID-19: the UK Interstitial Lung Disease-Long COVID Study (UKILD-Long COVID). BMJ Open Respiratory Research, 8 (1). e001049-e001049.

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Sigfrid, Louise ORCID: 0000-0003-2764-1177, Cevik, Muge ORCID: 0000-0003-1133-3874, Jesudason, Edwin, Lim, Wei Shen, Rello, Jordi ORCID: 0000-0003-0676-6210, Amuasi, John Humphrey, Bozza, Fernando ORCID: 0000-0003-4878-0256, Palmieri, Carlo ORCID: 0000-0001-9496-2718, Munblit, Daniel ORCID: 0000-0001-9652-6856, Holter, Jan Cato ORCID: 0000-0003-1618-5022 et al (show 26 more authors) , Kildal, Anders Benjamin, Russell, Clark, Ho, Antonia, Turtle, Lance ORCID: 0000-0002-0778-1693, Drake, Thomas, Beltrame, Anna, Hann, Katrina, Bangura, Ibrahim Richard, Fowler, Rob, Lakoh, Sulaiman, Berry, Colin, Lowe, David ORCID: 0000-0003-4866-2049, McPeake, Joanne ORCID: 0000-0001-8206-6801, Hashmi, Madiha ORCID: 0000-0002-7332-0692, Dyrhol-Riise, Anne Margarita, Donohue, Chloe, Plotkin, Daniel, Hardwick, Hayley, Elkheir, Natalie, Lone, Nazir ORCID: 0000-0003-2707-2779, Docherty, Annemarie, Harrison, Ewen ORCID: 0000-0002-5018-3066, Baille, Kenneth, Carson, Gail, Semple, Malcolm ORCID: 0000-0001-9700-0418 and Scott, Janet (2020) What is the recovery rate and risk of long-term consequences following a diagnosis of COVID-19? - A harmonised, global longitudinal observational study. MedRxiv.

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Kousathanas, Athanasios ORCID: 0000-0001-6265-6521, Pairo-Castineira, Erola ORCID: 0000-0002-2423-3090, Rawlik, Konrad, Stuckey, Alex ORCID: 0000-0001-8636-737X, Odhams, Christopher, Walker, Susan, Russell, Clark ORCID: 0000-0002-9873-8243, Malinauskas, Tomas, Millar, Jonathan ORCID: 0000-0002-4853-9377, Elliott, Katherine et al (show 52 more authors) , Griffiths, Fiona, Oosthuyzen, Wilna, Morrice, Kirstie, Keating, Sean, Wang, Bo, Rhodes, Daniel, Klaric, Lucija, Zechner, Marie, Parkinson, Nick, Bretherick, Andrew ORCID: 0000-0001-9258-3140, Siddiq, Afshan, Goddard, Peter, Donovan, Sally, Maslove, David, Nichol, Alistair, Semple, Malcolm ORCID: 0000-0001-9700-0418, Zainy, Tala, Maleady-Crowe, Fiona, Todd, Linda, Salehi, Shahla, Knight, Julian, Elgar, Greg, Chan, Georgia, Arumugam, Prabhu, Fowler, Tom ORCID: 0000-0002-7258-2279, Rendon, Augusto, Shankar-Hari, Manu, Summers, Charlotte ORCID: 0000-0002-7269-2873, Hinds, Charles, Horby, Peter, McAuley, Danny, Montgomery, Hugh, Openshaw, Peter JM, Wu, Yang, Yang, Jian, Elliott, Paul, Walsh, Timothy, Fawkes, Angie, Murphy, Lee, Rowan, Kathy, Ponting, Chris, Vitart, Veronique, Wilson, James, Scott, Richard, Clohisey, Sara, Moutsianas, Loukas, Law, Andy, Caulfield, Mark, Baillie, Kenneth, GenOMICC Investigators, , 23andMe, and Covid-19 Human Genetics Initiative, (2021) Whole genome sequencing identifies multiple loci for critical illness caused by COVID-19. [Preprint]

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COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium, , Ahern, David, Ai, Zhichao, Ainsworth, Mark, Allan, Chris, Allcock, Alice, Ansari, Azim ORCID: 0000-0003-2790-8353, Arancibia-Carcamo, Carolina, Aschenbrenner, Dominik, Attar, Moustafa ORCID: 0000-0003-4116-1276 et al (show 194 more authors) , Baillie, Kenneth, Barnes, Eleanor ORCID: 0000-0002-0860-0831, Bashford-Rogers, Rachael, Bashyal, Archana, Beer, Sally, Berridge, Georgina, Beveridge, Amy, Bibi, Sagida, Bicanic, Tihana, Blackwell, Luke, Bowness, Paul, Brent, Andrew, Brown, Andrew, Broxholme, John, Buck, David, Burnham, Katie, Byrne, Helen, Camara, Susana, Candido Ferreira, Ivan ORCID: 0000-0002-4916-4212, Charles, Philip, Chen, Wentao, Chen, Yi-Ling, Chong, Amanda, Clutterbuck, Elizabeth, Coles, Mark, Conlon, Christopher, Cornall, Richard, Cribbs, Adam, Curion, Fabiola ORCID: 0000-0003-2502-8803, Davenport, Emma, Davidson, Neil, Davis, Simon, Dendrou, Calliope, Dequaire, Julie, Dib, Lea, Docker, James, Dold, Christina, Dong, Tao, Downes, Damien, Drakesmith, Alexander, Dunachie, Susanna ORCID: 0000-0001-5665-6293, Duncan, David, Eijsbouts, Chris, Esnouf, Robert, Espinosa, Alexis, Etherington, Rachel, Fairfax, Benjamin, Fairhead, Rory ORCID: 0000-0001-7157-3015, Fang, Hai, Fassih, Shayan, Felle, Sally, Fernandez Mendoza, Maria, Ferreira, Ricardo, Fischer, Roman, Foord, Thomas, Forrow, Aden, Frater, John ORCID: 0000-0001-7163-7277, Fries, Anastasia, Gallardo Sanchez, Veronica, Garner, Lucy, Geeves, Clementine, Georgiou, Dominique, Godfrey, Leila, Golubchik, Tanya, Gomez Vazquez, Maria, Green, Angie, Harper, Hong, Harrington, Heather, Heilig, Raphael, Hester, Svenja, Hill, Jennifer, Hinds, Charles, Hird, Clare, Ho, Ling-Pei ORCID: 0000-0001-8319-301X, Hoekzema, Renee, Hollis, Benjamin, Hughes, Jim, Hutton, Paula, Jackson, Matthew, Jainarayanan, Ashwin, James-Bott, Anna, Jansen, Kathrin, Jeffery, Katie, Jones, Elizabeth, Jostins, Luke, Kerr, Georgina, Kim, David, Klenerman, Paul ORCID: 0000-0003-4307-9161, Knight, Julian ORCID: 0000-0002-0377-5536, Kumar, Vinod, Kumar Sharma, Piyush, Kurupati, Prathiba, Kwok, Andrew, Lee, Angela, Linder, Aline, Lockett, Teresa, Lonie, Lorne, Lopopolo, Maria, Lukoseviciute, Martyna ORCID: 0000-0002-8915-5249, Luo, Jian, Marinou, Spyridoula, Marsden, Brian, Martinez, Jose, Matthews, Philippa, Mazurczyk, Michalina, McGowan, Simon, McKechnie, Stuart, Mead, Adam, Mentzer, Alexander, Mi, Yuxin, Monaco, Claudia, Montadon, Ruddy, Napolitani, Giorgio, Nassiri, Isar, Novak, Alex, O'Brien, Darragh, O'Connor, Daniel ORCID: 0000-0002-6902-9886, O'Donnell, Denise, Ogg, Graham ORCID: 0000-0002-3097-045X, Overend, Lauren, Park, Inhye, Pavord, Ian, Peng, Yanchun, Penkava, Frank, Pereira Pinho, Mariana, Perez, Elena, Pollard, Andrew, Powrie, Fiona, Psaila, Bethan, Quan, Phuong, Repapi, Emmanouela, Revale, Santiago, Silva-Reyes, Laura, Richard, Jean-Baptiste, Rich-Griffin, Charlotte, Ritter, Thomas, Rollier, Christine, Rowland, Matthew, Ruehle, Fabian, Salio, Mariolina, Sansom, Stephen, Santos Delgado, Alberto, Sauka-Spengler, Tatjana, Schwessinger, Ron, Scozzafava, Giuseppe, Screaton, Gavin, Seigal, Anna, Semple, Malcolm ORCID: 0000-0001-9700-0418, Sergeant, Martin, Simoglou Karali, Christina, Sims, David, Skelly, Donal ORCID: 0000-0002-2426-3097, Slawinski, Hubert, Sobrinodiaz, Alberto, Sousos, Nikolaos ORCID: 0000-0002-9100-2954, Stafford, Lizzie ORCID: 0000-0002-1610-5136, Stockdale, Lisa, Strickland, Marie, Sumray, Otto, Sun, Bo, Taylor, Chelsea, Taylor, Stephen, Taylor, Adan, Thongjuea, Supat, Thraves, Hannah, Todd, John ORCID: 0000-0003-2740-8148, Tomic, Adriana, Tong, Orion, Trebes, Amy, Trzupek, Dominik, Tucci, Felicia, Turtle, Lance ORCID: 0000-0002-0778-1693, Udalova, Irina, Uhlig, Holm ORCID: 0000-0002-6111-7355, van Grinsven, Erinke, Vendrell, Iolanda, Verheul, Marije, Voda, Alexandru ORCID: 0000-0003-2974-6992, Wang, Guanlin, Wang, Lihui, Wang, Dapeng, Watkinson, Peter, Watson, Robert, Weinberger, Michael, Whalley, Justin ORCID: 0000-0002-0403-3091, Witty, Lorna, Wray, Katherine, Xue, Luzheng, Yeung, Hing Yuen, Yin, Zixi, Young, Rebecca, Youngs, Jonathan, Zhang, Ping and Zurke, Yasemin-Xiomara (2021) A blood atlas of COVID-19 defines hallmarks of disease severity and specificity. medRxiv.

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Thomson, Emma ORCID: 0000-0003-1482-0889, Rosen, Laura, Shepherd, James ORCID: 0000-0003-3915-048X, Spreafico, Roberto, da Silva Filipe, Ana, Wojcechowskyj, Jason, Davis, Chris ORCID: 0000-0002-7317-3266, Piccoli, Luca, Pascall, David, Dillen, Josh et al (show 50 more authors) , Lytras, Spyros, Czudnochowski, Nadine, Shah, Rajiv, Meury, Marcel, Jesudason, Natasha, De Marco, Anna, Li, Kathy, Bassi, Jessica, O’Toole, Aine, Pinto, Dora, Colquhoun, Rachel ORCID: 0000-0002-5577-9897, Culap, Katja, Jackson, Ben, Zatta, Fabrizia, Rambaut, Andrew, Jaconi, Stefano, Sreenu, Vattipally, Nix, Jay, Jarrett, Ruth, Beltramello, Martina, Nomikou, Kyriaki, Pizzuto, Matteo, Tong, Lily, Cameroni, Elisabetta, Johnson, Natasha, Wickenhagen, Arthur, Ceschi, Alessandro, Mair, Daniel, Ferrari, Paolo, Smollett, Katherine ORCID: 0000-0001-7961-7377, Sallusto, Federica, Carmichael, Stephen, Garzoni, Christian, Nichols, Jenna, Galli, Massimo, Hughes, Joseph, Riva, Agostino, Ho, Antonia, Semple, Malcolm ORCID: 0000-0001-9700-0418, Openshaw, Peter JM, Baillie, Kenneth, Rihn, Suzannah ORCID: 0000-0001-9495-4056, Lycett, Samantha, Virgin, Herbert, Telenti, Amalio, Corti, Davide, Robertson, David, Snell, Gyorgy, The ISARIC4C Investigators, and the COVID-19 Genomics UK (COG-UK) consortium, (2020) The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity. bioRxiv.

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Knight, Gwenan ORCID: 0000-0002-7263-9896, Pham, Thi Mui, Stimson, James, Funk, Sebastian, Jafari, Yalda, Pople, Diane ORCID: 0000-0002-5031-0109, Evans, Stephanie ORCID: 0000-0002-2345-5249, Yin, Mo, Brown, Colin, Bhattacharya, Alex et al (show 7 more authors) , Hope, Russell, Semple, Malcolm ORCID: 0000-0001-9700-0418, Read, Jonathan, Cooper, Ben ORCID: 0000-0002-9445-7217, Robotham, Julie, ISARIC4C Investigators, and CMMID COVID-19 working group, (2021) The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020. [Preprint]

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Townsend, Alain, Rijal, Pramila, Xiao, Julie, Tan, Tiong Kit, Huang, Kuan-Ying, Schimanski, Lisa, Huo, Jiandong, Gupta, Nimesh, Rahikainen, Rolle, Matthews, Philippa et al (show 44 more authors) , Crook, Derrick, Hoosdally, Sarah, Street, Teresa, Rudkin, Justine, Stoesser, Nicole, Karpe, Fredrik, Neville, Matthew, Ploeg, Rutger, Oliveira, Marta, Roberts, David, Lamikanra, Abigail, Tsang, Hoi, Bown, Abbie, Vipond, Richard, Mentzer, Alexander ORCID: 0000-0002-4502-2209, Knight, Julian, Kwok, Andrew, Screaton, Gavin, Mongkolsapaya, Juthathip, Dejnirattisai, Wanwisa, Supasa, Piyasa, Klenerman, Paul, Dold, Christina, Baillie, J, Moore, Shona ORCID: 0000-0001-8610-2806, Openshaw, Peter, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance ORCID: 0000-0002-0778-1693, Ainsworth, Mark, Allcock, Alice, Beer, Sally, Bibi, Sagida ORCID: 0000-0002-0855-2737, Clutterbuck, Elizabeth, Espinosa, Alexis, Mendoza, Maria, Georgiou, Dominique, Lockett, Teresa, Martinez, Jose, Perez, Elena, Sanchez, Veronica, Scozzafava, Giuseppe, Sobrinodiaz, Alberto, Thraves, Hannah and Joly, Etienne (2020) A haemagglutination test for rapid detection of antibodies to SARS-CoV-2. In Review Nature Research.

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Townsend, Alain ORCID: 0000-0002-3702-0107, Rijal, Pramila ORCID: 0000-0002-9214-9851, Xiao, Julie, Tan, Tiong Kit ORCID: 0000-0001-8746-8308, Huang, Kuan-Ying, Schimanski, Lisa, Huo, Jiangdong, Gupta, Nimesh, Rahikainen, Rolle, Matthews, Philippa et al (show 44 more authors) , Crook, Derrick ORCID: 0000-0002-0590-2850, Hoosdally, Sarah, Street, Teresa, Rudkin, Justine, Stoesser, Nicole ORCID: 0000-0002-4508-7969, Karpe, Fredrik, Neville, Matthew, Ploeg, Rutger, Oliveira, Marta, Roberts, David, Lamikanra, Abigail, Tsang, Hoi Pat, Bown, Abbie, Vipond, Richard, Mentzer, Alexander ORCID: 0000-0002-4502-2209, Knight, Julian ORCID: 0000-0002-0377-5536, Kwok, Andrew, Screaton, Gavin, Mongkolsapaya, Juthathip, Dejnirattisai, Wanwisa, Supasa, Piyada, Klenerman, Paul ORCID: 0000-0003-4307-9161, Dold, Christina, Baillie, Kenneth, Moore, Shona, Openshaw, Peter JM, Semple, Malcolm ORCID: 0000-0001-9700-0418, Turtle, Lance CW, Ainsworth, Mark, Allcock, Alice, Beer, Sally, Bibi, Sagida ORCID: 0000-0002-0855-2737, Clutterbuck, Elizabeth, Espinosa, Alexis, Mendoza, Maria, Georgiou, Dominique, Lockett, Teresa, Martinez, Jose, Perez, Elena, Sanchez, Veronica, Scozzafava, Giuseppe, Sobrinodiaz, Alberto, Thraves, Hannah and Joly, Etienne ORCID: 0000-0002-7264-2681 (2020) A haemagglutination test for rapid detection of antibodies to SARS-CoV-2. medRxiv.