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Zhou, Jingxian, Wang, Xuan, Wei, Zhen, Meng, Jia ORCID: 0000-0003-3455-205X and Huang, Daiyun (2022) 4acCPred: Weakly supervised prediction of Λl4-acetyldeoxycytosine DNA modification from sequences. MOLECULAR THERAPY-NUCLEIC ACIDS, 30. pp. 337-345.

Song, Sifan (2023) Advanced Representation Learning for Dense Prediction Tasks in Medical Image Analysis. PhD thesis, University of Liverpool.

Wei, Zhen (2020) Applied Data Science Methods in Epitranscriptomic Bioinformatics. PhD thesis, University of Liverpool.

Song, Zitao, Huang, Daiyun, Song, Bowen, Chen, Kunqi, Song, Yiyou, Liu, Gang, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications. NATURE COMMUNICATIONS, 12 (1). 4011-.

Zhu, Jingting, Yang, Lingyan, Zhang, Qibo, Meng, Jia ORCID: 0000-0003-3455-205X, Lu, Zhi-Liang ORCID: 0000-0002-3442-1415 and Rong, Rong (2020) Autophagy Induced by Simian Retrovirus Infection Controls Viral Replication and Apoptosis of Jurkat T Lymphocytes. VIRUSES-BASEL, 12 (4). E381-.

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Liu, Lian, Song, Bowen, Ma, Jiani, Song, Yi, Zhang, Song-Yao, Tang, Yujiao, Wu, Xiangyu, Wei, Zhen, Chen, Kunqi, Su, Jionglong et al (show 10 more authors) , Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Zhang, Lin, Zhang, Shao-Wu, Huang, Yufei, Lei, Xiujuan, Liu, Hui and Meng, Jia ORCID: 0000-0003-3455-205X (2020) Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 18. pp. 1587-1604.

Feng, Yuan (2021) Characterization of CD39 expression on neoantigen-specific T cells for adoptive cell transfer. PhD thesis, University of Liverpool.

Song, Bowen, Chen, Kunqi, Tang, Yujiao, Wei, Zhen, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome. BRIEFINGS IN BIOINFORMATICS, 22 (6). bbab088-.

Huang, Daiyun (2022) DEEP LEARNING-BASED RNA MODIFICATION PREDICTION METHOD DEVELOPMENT. PhD thesis, University of Liverpool.

Tang, Yujiao, Chen, Kunqi, Wu, Xiangyu, Wei, Zhen, Zhang, Song-Yao, Song, Bowen, Zhang, Shao-Wu, Huang, Yufei and Meng, Jia ORCID: 0000-0003-3455-205X (2019) DRUM: Inference of Disease-Associated m(6)A RNA Methylation Sites From a Multi-Layer Heterogeneous Network. FRONTIERS IN GENETICS, 10 (APR). 266-.

Zhao, Xichen, Zhang, Yuxin, Hang, Daiyun, Meng, Jia ORCID: 0000-0003-3455-205X and Wei, Zhen (2022) Detecting RNA modification using direct RNA sequencing: A systematic review. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 20. pp. 5740-5749.

Shen, Li (2021) Development of NanoBRET-based assays to determine ligand binding affinities and ligand-induced selective signalling of the human GnRH receptor. PhD thesis, University of Liverpool.

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Zhang, Yuxin, Jiang, Jie, Ma, Jiongming, Wei, Zhen, Wang, Yue, Song, Bowen, Meng, Jia ORCID: 0000-0003-3455-205X, Jia, Guifang, de Magalhães, João Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 et al (show 2 more authors) , Hang, Daiyun and Chen, Kunqi (2022) DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology. Nucleic acids research, 51 (D1). gkac1061-gkac1061.

Sivasudhan, Enakshi, Blake, Neil, Lu, Zhi-Liang, Meng, Jia ORCID: 0000-0003-3455-205X and Rong, Rong (2021) Dynamics of m6A RNA Methylome on the Hallmarks of Hepatocellular Carcinoma. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 9. 642443-.

Li, Yanqiang, Meng, Jia ORCID: 0000-0003-3455-205X and Zhao, Dongyu (2022) Editorial: RNA editing and modification in development and diseases. FRONTIERS IN GENETICS, 13. 1025445-.

Chen, Kunqi, Wei, Zhen, Liu, Hui, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415 and Meng, Jia ORCID: 0000-0003-3455-205X (2018) Enhancing Epitranscriptome Module Detection from m<SUP>6</SUP>A-Seq Data Using Threshold-Based Measurement Weighting Strategy. BIOMED RESEARCH INTERNATIONAL, 2018. 2075173-.

Tang, Yujiao (2022) Epitranscriptome data integration and functional prediction using complex networks and machine learning approaches. PhD thesis, University of Liverpool.

Zhang, Xiaoyang, Matziari, Magdalini, Xie, Yixin, Fernig, David ORCID: 0000-0003-4875-4293, Rong, Rong, Meng, Jia ORCID: 0000-0003-3455-205X and Lu, Zhi-Liang ORCID: 0000-0002-3442-1415 (2018) Functional examination of novel kisspeptin phosphinic peptides. PLOS ONE, 13 (4). e0195089-.

Huang, Daiyun, Chen, Kunqi, Song, Bowen, Wei, Zhen, Su, Jionglong, Coenen, Frans ORCID: 0000-0003-1026-6649, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2022) Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation. NUCLEIC ACIDS RESEARCH, 50 (18). pp. 10290-10310.

Coenen, Frans ORCID: 0000-0003-1026-6649, Chen, Kunqi, Song, Bowen, Zhen, Wei, Huang, Daiyun, Su, Jionglong, de Magalhães, João Pedro, Rigden, Daniel and Meng, Jia (2022) Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation. Nucleic Acids Research.

Zhang, Song-Yao, Zhang, Shao-Wu, Fan, Xiao-Nan, Meng, Jia ORCID: 0000-0003-3455-205X, Chen, Yidong, Gao, Shou-Jiang and Huang, Yufei (2019) Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods. PLOS COMPUTATIONAL BIOLOGY, 15 (1). e1006663-.

Cui, Xiaodong, Wei, Zhen, Zhang, Lin, Liu, Hui, Sun, Lei, Zhang, Shao-Wu, Huang, Yufei and Meng, Jia ORCID: 0000-0003-3455-205X (2016) Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features. BIOMED RESEARCH INTERNATIONAL, 2016. 8367534-.

Sivasudhan, Enakshi, Blake, Neil, Lu, Zhiliang ORCID: 0000-0002-3442-1415, Meng, Jia ORCID: 0000-0003-3455-205X and Rong, Rong (2022) Hepatitis B Viral Protein HBx and the Molecular Mechanisms Modulating the Hallmarks of Hepatocellular Carcinoma: A Comprehensive Review. CELLS, 11 (4). 741-.

Wu, Xiangyu (2021) Large-scale functional annotation of individual RNA methylation sites by mining complex biological networks. PhD thesis, University of Liverpool.

Song, Bowen (2022) Machine learning enabled genetic and functional interpretation of the epitranscriptome. PhD thesis, University of Liverpool.

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Liu, Hui, Wang, Huaizhi, Wei, Zhen, Zhang, Songyao, Hua, Gang, Zhang, Shao-Wu, Zhang, Lin, Gao, Shou-Jiang, Meng, Jia ORCID: 0000-0003-3455-205X, Chen, Xing et al (show 1 more authors) and Huang, Yufei (2018) MeT-DB V2.0: elucidating context-specific functions of <i>N</i><SUP>6</SUP>-methyl-adenosine methyltranscriptome. NUCLEIC ACIDS RESEARCH, 46 (D1). D281-D287.

Wang, Yue, Chen, Kunqi, Wei, Zhen, Coenen, Frans ORCID: 0000-0003-1026-6649, Su, Jionglong and Meng, Jia ORCID: 0000-0003-3455-205X (2021) MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis. BIOINFORMATICS, 37 (9). pp. 1285-1291.

Song, Yiyou, Wang, Yue, Wang, Xuan, Huang, Daiyun, Nguyen, Anh ORCID: 0000-0002-1449-211X and Meng, Jia ORCID: 0000-0003-3455-205X (2023) Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes. BRIEFINGS IN BIOINFORMATICS, 24 (3). bbad105-.

Song, Sifan ORCID: 0000-0002-7940-650X, Bai, Tianming, Zhao, Yanxin, Zhang, Wenbo, Yang, Chunxiao, Meng, Jia ORCID: 0000-0003-3455-205X, Ma, Fei ORCID: 0000-0001-6099-480X and Su, Jionglong (2021) A New Convolutional Neural Network Architecture for Automatic Segmentation of Overlapping Human Chromosomes. NEURAL PROCESSING LETTERS, 54 (1). pp. 285-301.

Song, Sifan ORCID: 0000-0002-7940-650X, Huang, Daiyun, Hu, Yalun, Yang, Chunxiao, Meng, Jia ORCID: 0000-0003-3455-205X, Ma, Fei ORCID: 0000-0001-6099-480X, Coenen, Frans ORCID: 0000-0003-1026-6649, Zhang, Jiaming and Su, Jionglong (2021) A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image. In: 2021 14th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI), 2021-10-23 - 2021-10-25.

Song, Bowen, Tang, Yujiao, Wei, Zhen, Liu, Gang, Su, Jionglong, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi (2020) PIANO: A Web Server for Pseudouridine-Site (ψ) Identification and Functional Annotation. FRONTIERS IN GENETICS, 11. 88-.

Song, Bowen, Chen, Kunqi, Tang, Yujiao, Ma, Jialin, Meng, Jia ORCID: 0000-0003-3455-205X and Wei, Zhen (2020) PSI-MOUSE: Predicting Mouse Pseudouridine Sites From Sequence and Genome-Derived Features. EVOLUTIONARY BIOINFORMATICS, 16. 1176934320925752-.

Xue, Hao, Wei, Zhen, Chen, Kunqi, Tang, Yujiao, Wu, Xiangyu, Su, Jionglong and Meng, Jia ORCID: 0000-0003-3455-205X (2020) Prediction of RNA Methylation Status From Gene Expression Data Using Classification and Regression Methods. EVOLUTIONARY BIOINFORMATICS, 16. pp. 1-5.

Liu, Lian, Zhang, Shao-Wu, Huang, Yufei and Meng, Jia ORCID: 0000-0003-3455-205X (2017) QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model. BMC BIOINFORMATICS, 18 (1). 387-.

Zhang, Lin, Chen, Shutao, Zhu, Jingyi, Meng, Jia ORCID: 0000-0003-3455-205X and Liu, Hui (2020) REW-ISA: unveiling local functional blocks in epi-transcriptome profiling data via an RNA expression-weighted iterative signature algorithm. BMC BIOINFORMATICS, 21 (1). 447-.

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Song, Bowen, Wang, Xuan, Liang, Zhanmin, Ma, Jiongming, Huang, Daiyun, Wang, Yue, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X, Liu, Gang et al (show 2 more authors) , Chen, Kunqi and Wei, Zhen (2023) RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication. NUCLEIC ACIDS RESEARCH, 51 (D1). D1388-D1396.

Chen, Kunqi, Song, Bowen, Tang, Yujiao, Wei, Zhen, Xu, Qingru, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. NUCLEIC ACIDS RESEARCH, 49 (D1). D1396-D1404.

Li, Zhirou, Mao, Jinge, Huang, Daiyun, Song, Bowen and Meng, Jia ORCID: 0000-0003-3455-205X (2022) RNADSN: Transfer-Learning 5-Methyluridine (m<SUP>5</SUP>U) Modification on mRNAs from Common Features of tRNA. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 23 (21). 13493-.

Zhang, Song-Yao, Zhang, Shao-Wu, Zhang, Teng, Fan, Xiao-Nan and Meng, Jia ORCID: 0000-0003-3455-205X (2021) Recent advances in functional annotation and prediction of the epitranscriptome. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19. pp. 3015-3026.

Coenen, Frans ORCID: 0000-0003-1026-6649, Wang, Yue, Meng, Jia ORCID: 0000-0003-3455-205X, Wei, Zhen and Su, Jionglong (2023) RgnTX: colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity. Computational and Structural Biotechnology Journal, 21. pp. 4110-4117.

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Song, Sifan ORCID: 0000-0002-7940-650X, Wang, Jinfeng, Cheng, Fengrui, Cao, Qirui, Zuo, Yihan, Lei, Yongteng, Yang, Ruomai, Yang, Chunxiao, Coenen, Frans ORCID: 0000-0003-1026-6649, Meng, Jia ORCID: 0000-0003-3455-205X et al (show 2 more authors) , Dang, Kang and Su, Jionglong (2023) A Robust Framework of Chromosome Straightening With Vit-Patch Gan. In: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), 2023-4-18 - 2023-4-21.

Wang, Yue, Wang, Xuan, Cui, Xiaodong, Meng, Jia ORCID: 0000-0003-3455-205X and Rong, Rong (2023) Self-attention enabled deep learning of dihydrouridine (D) modification on mRNAs unveiled a distinct sequence signature from tRNAs. MOLECULAR THERAPY-NUCLEIC ACIDS, 31. pp. 411-420.

Wang, Yue, Wang, Xuan, Cui, Xiaodong, Meng, Jia ORCID: 0000-0003-3455-205X and Rong, Rong ORCID: 0000-0002-7641-7684 (2023) Self-attention enabled deep learning of dihydrouridine (D) modification on mRNAs unveiled a distinct sequence signature from tRNAs. Molecular therapy. Nucleic acids, 31. pp. 411-420.

Wang, Yue (2023) Statistical and Deep Learning Approaches for Characterizing RNA Modification with respect to RNA Sequence, Functional Component and Gene Structure. PhD thesis, University of Liverpool.

Wang, Jinfeng, Huang, Qiming, Tang, Feilong, Meng, Jia ORCID: 0000-0003-3455-205X, Su, Jionglong and Song, Sifan ORCID: 0000-0002-7940-650X (2022) Stepwise Feature Fusion: Local Guides Global. .

Zha, Lei (2023) TREATMENTS OF NOSOCOMIAL PNEUMONIA IN THE ERA OF ANTIMICROBIAL RESISTANCE. PhD thesis, University of Liverpool.

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Wei, Zhen, Panneerdoss, Subbarayalu, Timilsina, Santosh, Zhu, Jingting, Mohammad, Tabrez A, Lu, Zhi-Liang ORCID: 0000-0002-3442-1415, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Chen, Yidong, Rong, Rong, Huang, Yufei et al (show 2 more authors) , Rao, Manjeet K and Meng, Jia ORCID: 0000-0003-3455-205X (2018) Topological Characterization of Human and Mouse m<SUP>5</SUP>C Epitranscriptome Revealed by Bisulfite Sequencing. INTERNATIONAL JOURNAL OF GENOMICS, 2018. 1351964-.

Chen, Kunqi (2021) Unraveling the epitranscriptomes with bioinformatics approaches. PhD thesis, University of Liverpool.

Xu, Nengwei (2022) Unravelling the role of the oncoprotein DEK in the regulation of ribosome biogenesis. PhD thesis, University of Liverpool.

Chen, Kunqi, Wei, Zhen, Zhang, Qing, Wu, Xiangyu, Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2019) WHISTLE: a high-accuracy map of the human N<SUP>6</SUP>-methyladenosine (m<SUP>6</SUP>A) epitranscriptome predicted using a machine learning approach. NUCLEIC ACIDS RESEARCH, 47 (7). e41-.

Huang, Daiyun, Song, Bowen, Wei, Jingjue, Su, Jionglong, Coenen, Frans ORCID: 0000-0003-1026-6649 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) Weakly supervised learning of RNA modifications from low-resolution epitranscriptome data. In: 29th Intelligent Systems for Molecular Biology and 20th International Society for Computational Biology (ISMB-ISCB) joint conference, England.

Cui, Xiaodong, Meng, Jia ORCID: 0000-0003-3455-205X, Zhang, Shaowu, Rao, Manjeet K, Chen, Yidong and Huang, Yufei (2016) A hierarchical model for clustering m<SUP>6</SUP>A methylation peaks in MeRIP-seq data. BMC GENOMICS, 17 (Suppl ). 520-.

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Liang, Zhanmin, Ye, Haokai, Ma, Jiongming, Wei, Zhen, Wang, Yue, Zhang, Yuxin, Huang, Daiyun, Song, Bowen, Meng, Jia ORCID: 0000-0003-3455-205X, Rigden, Daniel J ORCID: 0000-0002-7565-8937 et al (show 1 more authors) and Chen, Kunqi (2023) m(6) A-Atlas v2.0: updated resources for unraveling the N 6-methyladenosine (m(6)A) epitranscriptome among multiple species. NUCLEIC ACIDS RESEARCH, 52 (D1). D194-D202.

Zhang, Song-Yao, Zhang, Shao-Wu, Liu, Lian, Meng, Jia ORCID: 0000-0003-3455-205X and Huang, Yufei (2016) m(6)A-Driver: Identifying Context-Specific mRNA m(6)A Methylation-Driven Gene Interaction Networks. PLOS COMPUTATIONAL BIOLOGY, 12 (12). e1005287-.

Ma, Jiongming, Song, Bowen, Wei, Zhen, Huang, Daiyun, Zhang, Yuxin, Su, Jionglong, de Magalhães, João Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi (2022) m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome. Nucleic acids research, 50 (D1). D196-D203.

Xu, Zhongxing, Wang, Xuan, Meng, Jia ORCID: 0000-0003-3455-205X, Zhang, Lin and Song, Bowen (2023) m5U-GEPred: prediction of RNA 5-methyluridine sites based on sequence-derived and graph embedding features. Frontiers in microbiology, 14. 1277099-.

Jiang, Jie, Song, Bowen, Tang, Yujiao, Chen, Kunqi, Wei, Zhen and Meng, Jia ORCID: 0000-0003-3455-205X (2020) m5UPred: A Web Server for the Prediction of RNA 5-Methyluridine Sites from Sequences. MOLECULAR THERAPY-NUCLEIC ACIDS, 22. pp. 742-747.

Song, Bowen ORCID: 0000-0002-8586-0573, Huang, Daiyun ORCID: 0000-0002-3067-7165, Zhang, Yuxin ORCID: 0000-0003-1900-6712, Wei, Zhen, Su, Jionglong ORCID: 0000-0001-5360-6493, Pedro de Magalhães, João, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X and Chen, Kunqi ORCID: 0000-0002-6025-8957 (2023) m6A-TSHub: Unveiling the Context-specific m⁶A Methylation and m⁶A-affecting Mutations in 23 Human Tissues. Genomics, proteomics & bioinformatics, 21 (4). pp. 678-694.

Wu, Xiangyu, Wei, Zhen, Chen, Kunqi, Zhang, Qing, Su, Jionglong, Liu, Hui, Zhang, Lin and Meng, Jia ORCID: 0000-0003-3455-205X (2019) m6Acomet: large-scale functional prediction of individual m<SUP>6</SUP>A RNA methylation sites from an RNA co-methylation network. BMC BIOINFORMATICS, 20 (1). 223-.

Wang, Xuan, Zhang, Yuxin, Chen, Kunqi, Liang, Zhanmin, Ma, Jiongming, Xia, Rong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937, Meng, Jia ORCID: 0000-0003-3455-205X and Song, Bowen (2023) m7GHub V2.0: an updated database for decoding the N7-methylguanosine (m<SUP>7</SUP>G) epitranscriptome. NUCLEIC ACIDS RESEARCH, 52 (D1). D203-D212.

Song, Bowen, Tang, Yujiao, Chen, Kunqi, Wei, Zhen, Rong, Rong, Lu, Zhiliang ORCID: 0000-0002-3442-1415, Su, Jionglong, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2020) m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human. Bioinformatics, 36 (11). pp. 3528-3536.

Zhen, Di, Wu, Yuxuan, Zhang, Yuxin, Chen, Kunqi, Song, Bowen, Xu, Haiqi, Tang, Yujiao, Wei, Zhen and Meng, Jia ORCID: 0000-0003-3455-205X (2020) m<SUP>6</SUP>A Reader: Epitranscriptome Target Prediction and Functional Characterization of <i>N</i><SUP>6</SUP>-Methyladenosine (m<SUP>6</SUP>A) Readers. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 8. 741-.

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Tang, Yujiao, Chen, Kunqi, Song, Bowen, Ma, Jiongming, Wu, Xiangyu, Xu, Qingru, Wei, Zhen, Su, Jionglong, Liu, Gang, Rong, Rong et al (show 4 more authors) , Lu, Zhiliang ORCID: 0000-0002-3442-1415, de Magalhaes, Joao Pedro ORCID: 0000-0002-6363-2465, Rigden, Daniel J ORCID: 0000-0002-7565-8937 and Meng, Jia ORCID: 0000-0003-3455-205X (2021) m<SUP>6</SUP>A-Atlas: a comprehensive knowledgebase for unraveling the <i>N</i><SUP>6</SUP>-methyladenosine (m<SUP>6</SUP>A) epitranscriptome. NUCLEIC ACIDS RESEARCH, 49 (D1). D134-D143.

Cui, Xiaodong, Meng, Jia ORCID: 0000-0003-3455-205X, Zhang, Shaowu, Chen, Yidong and Huang, Yufei (2016) A novel algorithm for calling mRNA m<SUP>6</SUP>A peaks by modeling biological variances in MeRIP-seq data. BIOINFORMATICS, 32 (12). pp. 378-385.

Zhang, Teng, Zhang, Shao-Wu, Zhang, Lin and Meng, Jia ORCID: 0000-0003-3455-205X (2018) trumpet: transcriptome-guided quality assessment of m<SUP>6</SUP>A-seq data. BMC BIOINFORMATICS, 19 (1). 260-.